Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS03285

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS03275 and DDA3937_RS03280 are separated by 310 nucleotidesDDA3937_RS03280 and DDA3937_RS03285 overlap by 20 nucleotidesDDA3937_RS03285 and DDA3937_RS03290 are separated by 96 nucleotidesDDA3937_RS03290 and DDA3937_RS03295 are separated by 128 nucleotides DDA3937_RS03275: DDA3937_RS03275 - tRNA-modifying protein YgfZ, at 716,283 to 717,263 _RS03275 DDA3937_RS03280: DDA3937_RS03280 - FAD assembly factor SdhE, at 717,574 to 717,840 _RS03280 DDA3937_RS03285: DDA3937_RS03285 - protein YgfX, at 717,821 to 718,252 _RS03285 DDA3937_RS03290: DDA3937_RS03290 - flavodoxin FldB, at 718,349 to 718,867 _RS03290 DDA3937_RS03295: DDA3937_RS03295 - MHS family MFS transporter, at 718,996 to 720,321 _RS03295 Position (kb) 717 718 719Strain fitness (log2 ratio) -3 -2 -1 0 1at 717.284 kb on - strandat 717.284 kb on - strandat 717.284 kb on - strandat 717.306 kb on + strandat 717.306 kb on + strandat 717.307 kb on - strandat 717.353 kb on + strandat 717.409 kb on + strandat 717.409 kb on + strandat 717.410 kb on - strandat 717.410 kb on - strandat 717.420 kb on + strandat 717.421 kb on - strandat 717.440 kb on + strandat 717.441 kb on - strandat 717.443 kb on + strandat 717.455 kb on + strandat 717.455 kb on + strandat 717.456 kb on - strandat 717.465 kb on + strandat 717.481 kb on + strandat 717.481 kb on + strandat 717.481 kb on + strandat 717.481 kb on + strandat 717.482 kb on - strandat 717.482 kb on - strandat 717.502 kb on + strandat 717.502 kb on + strandat 717.507 kb on + strandat 717.513 kb on + strandat 717.514 kb on - strandat 717.550 kb on + strandat 717.551 kb on - strandat 717.551 kb on - strandat 717.597 kb on + strandat 717.598 kb on - strandat 717.668 kb on - strand, within DDA3937_RS03280at 717.714 kb on - strand, within DDA3937_RS03280at 717.813 kb on + strand, within DDA3937_RS03280at 717.814 kb on - strandat 718.071 kb on + strand, within DDA3937_RS03285at 718.072 kb on - strand, within DDA3937_RS03285at 718.168 kb on + strand, within DDA3937_RS03285at 718.168 kb on + strand, within DDA3937_RS03285at 718.355 kb on + strandat 718.355 kb on + strandat 718.356 kb on - strandat 718.419 kb on + strand, within DDA3937_RS03290at 718.459 kb on + strand, within DDA3937_RS03290at 718.460 kb on - strand, within DDA3937_RS03290at 718.595 kb on + strand, within DDA3937_RS03290at 718.614 kb on + strand, within DDA3937_RS03290at 718.731 kb on + strand, within DDA3937_RS03290at 718.731 kb on + strand, within DDA3937_RS03290at 718.732 kb on - strand, within DDA3937_RS03290at 718.779 kb on - strand, within DDA3937_RS03290at 718.831 kb on - strandat 718.831 kb on - strandat 718.859 kb on + strandat 718.867 kb on + strandat 718.867 kb on + strandat 718.867 kb on + strandat 718.868 kb on - strandat 718.868 kb on - strandat 718.868 kb on - strandat 718.868 kb on - strandat 718.942 kb on + strandat 718.997 kb on + strandat 718.998 kb on - strandat 718.998 kb on - strandat 719.072 kb on + strandat 719.084 kb on + strandat 719.084 kb on + strandat 719.084 kb on + strandat 719.084 kb on + strandat 719.084 kb on + strandat 719.084 kb on + strandat 719.084 kb on + strandat 719.084 kb on + strandat 719.085 kb on - strandat 719.085 kb on - strandat 719.085 kb on - strandat 719.085 kb on - strandat 719.097 kb on - strandat 719.123 kb on + strandat 719.123 kb on + strandat 719.123 kb on + strandat 719.124 kb on - strandat 719.149 kb on - strand, within DDA3937_RS03295at 719.161 kb on - strand, within DDA3937_RS03295at 719.161 kb on - strand, within DDA3937_RS03295at 719.162 kb on + strand, within DDA3937_RS03295at 719.162 kb on + strand, within DDA3937_RS03295at 719.162 kb on + strand, within DDA3937_RS03295at 719.162 kb on + strand, within DDA3937_RS03295at 719.162 kb on + strand, within DDA3937_RS03295at 719.163 kb on - strand, within DDA3937_RS03295

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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717,284 - +0.3
717,284 - -0.2
717,284 - -0.2
717,306 + -0.2
717,306 + +0.5
717,307 - +0.1
717,353 + +0.2
717,409 + +1.3
717,409 + +0.0
717,410 - -0.9
717,410 - -0.6
717,420 + +0.6
717,421 - -1.0
717,440 + +0.6
717,441 - -0.7
717,443 + -0.2
717,455 + -0.9
717,455 + -0.1
717,456 - -0.2
717,465 + -1.5
717,481 + -1.3
717,481 + +1.5
717,481 + -0.7
717,481 + +1.2
717,482 - -0.7
717,482 - -1.7
717,502 + -0.6
717,502 + -0.7
717,507 + +0.8
717,513 + -1.2
717,514 - -0.7
717,550 + +0.8
717,551 - -3.4
717,551 - -0.7
717,597 + -0.0
717,598 - +1.3
717,668 - DDA3937_RS03280 0.35 -0.0
717,714 - DDA3937_RS03280 0.52 +0.6
717,813 + DDA3937_RS03280 0.90 -0.4
717,814 - -2.4
718,071 + DDA3937_RS03285 0.58 -0.4
718,072 - DDA3937_RS03285 0.58 -0.6
718,168 + DDA3937_RS03285 0.80 -0.8
718,168 + DDA3937_RS03285 0.80 -2.1
718,355 + -1.4
718,355 + +1.2
718,356 - -1.2
718,419 + DDA3937_RS03290 0.13 +0.0
718,459 + DDA3937_RS03290 0.21 -1.6
718,460 - DDA3937_RS03290 0.21 -0.0
718,595 + DDA3937_RS03290 0.47 -0.3
718,614 + DDA3937_RS03290 0.51 +0.6
718,731 + DDA3937_RS03290 0.74 +0.2
718,731 + DDA3937_RS03290 0.74 +0.9
718,732 - DDA3937_RS03290 0.74 +0.2
718,779 - DDA3937_RS03290 0.83 +0.4
718,831 - +0.7
718,831 - -0.1
718,859 + -0.3
718,867 + -2.3
718,867 + -0.2
718,867 + -0.4
718,868 - +0.7
718,868 - -2.6
718,868 - -0.1
718,868 - -0.6
718,942 + +0.2
718,997 + +0.1
718,998 - +0.8
718,998 - +0.8
719,072 + -0.8
719,084 + +0.7
719,084 + +0.2
719,084 + -0.4
719,084 + +0.1
719,084 + +0.8
719,084 + -0.5
719,084 + +0.2
719,084 + -0.1
719,085 - +0.3
719,085 - -1.2
719,085 - -0.4
719,085 - -1.0
719,097 - +1.3
719,123 + +0.8
719,123 + -1.7
719,123 + +0.2
719,124 - -0.4
719,149 - DDA3937_RS03295 0.12 -1.5
719,161 - DDA3937_RS03295 0.12 -0.6
719,161 - DDA3937_RS03295 0.12 -0.1
719,162 + DDA3937_RS03295 0.13 -2.2
719,162 + DDA3937_RS03295 0.13 -0.4
719,162 + DDA3937_RS03295 0.13 +0.3
719,162 + DDA3937_RS03295 0.13 -0.2
719,162 + DDA3937_RS03295 0.13 +0.8
719,163 - DDA3937_RS03295 0.13 -0.4

Or see this region's nucleotide sequence