Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS03150

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS03145 and DDA3937_RS03150 are separated by 71 nucleotidesDDA3937_RS03150 and DDA3937_RS03160 are separated by 628 nucleotides DDA3937_RS03145: DDA3937_RS03145 - phosphopentomutase, at 693,265 to 694,488 _RS03145 DDA3937_RS03150: DDA3937_RS03150 - purine-nucleoside phosphorylase, at 694,560 to 695,285 _RS03150 DDA3937_RS03160: DDA3937_RS03160 - VOC family protein, at 695,914 to 696,468 _RS03160 Position (kb) 694 695 696Strain fitness (log2 ratio) -2 -1 0 1 2 3at 693.611 kb on - strand, within DDA3937_RS03145at 693.835 kb on + strand, within DDA3937_RS03145at 694.054 kb on + strand, within DDA3937_RS03145at 694.089 kb on + strandat 694.153 kb on - strand, within DDA3937_RS03145at 694.516 kb on - strandat 694.540 kb on - strandat 694.565 kb on + strandat 694.565 kb on + strandat 694.574 kb on + strandat 694.574 kb on + strandat 694.574 kb on + strandat 694.574 kb on + strandat 694.574 kb on + strandat 694.574 kb on + strandat 694.574 kb on + strandat 694.575 kb on - strandat 694.575 kb on - strandat 694.575 kb on - strandat 694.575 kb on - strandat 694.575 kb on - strandat 694.641 kb on + strand, within DDA3937_RS03150at 694.641 kb on + strand, within DDA3937_RS03150at 694.642 kb on - strand, within DDA3937_RS03150at 694.642 kb on - strand, within DDA3937_RS03150at 694.694 kb on + strand, within DDA3937_RS03150at 694.716 kb on + strand, within DDA3937_RS03150at 694.716 kb on + strandat 694.716 kb on + strand, within DDA3937_RS03150at 694.717 kb on - strand, within DDA3937_RS03150at 694.757 kb on + strand, within DDA3937_RS03150at 694.776 kb on + strand, within DDA3937_RS03150at 694.776 kb on + strand, within DDA3937_RS03150at 694.923 kb on - strand, within DDA3937_RS03150at 694.923 kb on - strand, within DDA3937_RS03150at 695.040 kb on + strand, within DDA3937_RS03150at 695.040 kb on + strand, within DDA3937_RS03150at 695.040 kb on + strand, within DDA3937_RS03150at 695.040 kb on + strand, within DDA3937_RS03150at 695.041 kb on - strand, within DDA3937_RS03150at 695.041 kb on - strand, within DDA3937_RS03150at 695.118 kb on + strand, within DDA3937_RS03150at 695.118 kb on + strand, within DDA3937_RS03150at 695.125 kb on + strand, within DDA3937_RS03150at 695.126 kb on - strand, within DDA3937_RS03150at 695.270 kb on + strandat 695.296 kb on - strandat 695.296 kb on - strandat 695.298 kb on + strandat 695.298 kb on + strandat 695.298 kb on + strandat 695.298 kb on + strandat 695.298 kb on + strandat 695.298 kb on + strandat 695.299 kb on - strandat 695.299 kb on - strandat 695.299 kb on - strandat 695.306 kb on + strandat 695.353 kb on - strandat 695.353 kb on - strandat 695.353 kb on - strandat 695.353 kb on - strandat 695.353 kb on - strandat 695.357 kb on - strandat 695.663 kb on + strandat 695.663 kb on + strandat 695.663 kb on + strandat 695.663 kb on + strandat 695.718 kb on + strandat 695.718 kb on + strandat 695.719 kb on - strandat 695.719 kb on - strandat 695.788 kb on + strandat 695.788 kb on + strandat 695.798 kb on + strandat 695.875 kb on + strandat 695.876 kb on - strandat 696.051 kb on - strand, within DDA3937_RS03160at 696.061 kb on + strand, within DDA3937_RS03160at 696.061 kb on + strand, within DDA3937_RS03160at 696.062 kb on - strand, within DDA3937_RS03160at 696.062 kb on - strand, within DDA3937_RS03160at 696.143 kb on + strand, within DDA3937_RS03160at 696.143 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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693,611 - DDA3937_RS03145 0.28 -1.1
693,835 + DDA3937_RS03145 0.47 +0.1
694,054 + DDA3937_RS03145 0.64 +0.4
694,089 + -0.7
694,153 - DDA3937_RS03145 0.73 -0.1
694,516 - +0.5
694,540 - -0.4
694,565 + +1.9
694,565 + -1.0
694,574 + +0.4
694,574 + +0.9
694,574 + -0.9
694,574 + -2.5
694,574 + +1.5
694,574 + -1.1
694,574 + +0.4
694,575 - -0.6
694,575 - -1.0
694,575 - -0.4
694,575 - -0.4
694,575 - +0.8
694,641 + DDA3937_RS03150 0.11 -0.1
694,641 + DDA3937_RS03150 0.11 -0.3
694,642 - DDA3937_RS03150 0.11 +0.1
694,642 - DDA3937_RS03150 0.11 +0.0
694,694 + DDA3937_RS03150 0.18 -1.1
694,716 + DDA3937_RS03150 0.21 +0.9
694,716 + -1.5
694,716 + DDA3937_RS03150 0.21 +0.3
694,717 - DDA3937_RS03150 0.22 -1.5
694,757 + DDA3937_RS03150 0.27 -1.1
694,776 + DDA3937_RS03150 0.30 -0.7
694,776 + DDA3937_RS03150 0.30 -0.1
694,923 - DDA3937_RS03150 0.50 -2.5
694,923 - DDA3937_RS03150 0.50 +0.9
695,040 + DDA3937_RS03150 0.66 -0.9
695,040 + DDA3937_RS03150 0.66 -0.1
695,040 + DDA3937_RS03150 0.66 -0.2
695,040 + DDA3937_RS03150 0.66 +0.4
695,041 - DDA3937_RS03150 0.66 -0.7
695,041 - DDA3937_RS03150 0.66 -1.6
695,118 + DDA3937_RS03150 0.77 -2.6
695,118 + DDA3937_RS03150 0.77 -0.4
695,125 + DDA3937_RS03150 0.78 +0.2
695,126 - DDA3937_RS03150 0.78 -0.4
695,270 + +0.3
695,296 - -0.5
695,296 - -0.9
695,298 + -0.1
695,298 + +0.9
695,298 + -0.6
695,298 + +0.4
695,298 + -0.7
695,298 + -0.1
695,299 - +0.4
695,299 - -0.6
695,299 - +0.2
695,306 + -0.5
695,353 - -1.0
695,353 - -0.9
695,353 - +0.2
695,353 - -0.6
695,353 - +0.3
695,357 - +0.7
695,663 + +2.9
695,663 + -0.2
695,663 + +0.4
695,663 + -2.5
695,718 + -0.7
695,718 + -0.4
695,719 - -0.9
695,719 - +0.1
695,788 + +0.6
695,788 + -0.5
695,798 + -0.1
695,875 + -0.4
695,876 - +1.7
696,051 - DDA3937_RS03160 0.25 +0.9
696,061 + DDA3937_RS03160 0.26 +0.0
696,061 + DDA3937_RS03160 0.26 -1.0
696,062 - DDA3937_RS03160 0.27 -1.2
696,062 - DDA3937_RS03160 0.27 -0.6
696,143 + DDA3937_RS03160 0.41 +0.2
696,143 + +0.4

Or see this region's nucleotide sequence