Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02930 and DDA3937_RS02935 are separated by 178 nucleotides DDA3937_RS02935 and DDA3937_RS02940 are separated by 177 nucleotides DDA3937_RS02940 and DDA3937_RS02945 are separated by 263 nucleotides
DDA3937_RS02930: DDA3937_RS02930 - oxidoreductase, at 649,142 to 649,963
_RS02930
DDA3937_RS02935: DDA3937_RS02935 - NADP-dependent oxidoreductase, at 650,142 to 651,143
_RS02935
DDA3937_RS02940: DDA3937_RS02940 - tRNA-Ile, at 651,321 to 651,396
_RS02940
DDA3937_RS02945: DDA3937_RS02945 - RNA polymerase sigma factor RpoD, at 651,660 to 653,495
_RS02945
Position (kb) 650
651
652 Strain fitness (log2 ratio) -2
-1
0
1
2 at 649.142 kb on - strand at 649.153 kb on + strand at 649.153 kb on + strand at 649.154 kb on - strand at 649.154 kb on - strand at 649.202 kb on - strand at 649.229 kb on + strand, within DDA3937_RS02930 at 649.229 kb on + strand, within DDA3937_RS02930 at 649.230 kb on - strand, within DDA3937_RS02930 at 649.232 kb on - strand, within DDA3937_RS02930 at 649.232 kb on - strand, within DDA3937_RS02930 at 649.232 kb on - strand, within DDA3937_RS02930 at 649.232 kb on - strand, within DDA3937_RS02930 at 649.236 kb on + strand, within DDA3937_RS02930 at 649.236 kb on + strand, within DDA3937_RS02930 at 649.236 kb on + strand, within DDA3937_RS02930 at 649.236 kb on + strand, within DDA3937_RS02930 at 649.236 kb on + strand, within DDA3937_RS02930 at 649.237 kb on - strand, within DDA3937_RS02930 at 649.237 kb on - strand, within DDA3937_RS02930 at 649.237 kb on - strand, within DDA3937_RS02930 at 649.237 kb on - strand, within DDA3937_RS02930 at 649.238 kb on + strand, within DDA3937_RS02930 at 649.238 kb on + strand, within DDA3937_RS02930 at 649.238 kb on + strand, within DDA3937_RS02930 at 649.238 kb on + strand, within DDA3937_RS02930 at 649.239 kb on - strand, within DDA3937_RS02930 at 649.239 kb on - strand, within DDA3937_RS02930 at 649.239 kb on - strand, within DDA3937_RS02930 at 649.239 kb on - strand, within DDA3937_RS02930 at 649.368 kb on + strand, within DDA3937_RS02930 at 649.369 kb on - strand, within DDA3937_RS02930 at 649.378 kb on + strand, within DDA3937_RS02930 at 649.436 kb on - strand, within DDA3937_RS02930 at 649.555 kb on - strand, within DDA3937_RS02930 at 649.578 kb on - strand, within DDA3937_RS02930 at 649.632 kb on + strand, within DDA3937_RS02930 at 649.632 kb on + strand, within DDA3937_RS02930 at 649.632 kb on + strand, within DDA3937_RS02930 at 649.633 kb on - strand, within DDA3937_RS02930 at 649.633 kb on - strand, within DDA3937_RS02930 at 649.633 kb on - strand, within DDA3937_RS02930 at 649.633 kb on - strand, within DDA3937_RS02930 at 649.633 kb on - strand, within DDA3937_RS02930 at 649.633 kb on - strand, within DDA3937_RS02930 at 649.633 kb on - strand, within DDA3937_RS02930 at 649.637 kb on - strand, within DDA3937_RS02930 at 649.637 kb on - strand, within DDA3937_RS02930 at 649.637 kb on - strand, within DDA3937_RS02930 at 649.637 kb on - strand, within DDA3937_RS02930 at 649.637 kb on - strand, within DDA3937_RS02930 at 649.674 kb on - strand, within DDA3937_RS02930 at 649.803 kb on + strand, within DDA3937_RS02930 at 649.933 kb on + strand at 649.934 kb on - strand at 649.934 kb on - strand at 650.006 kb on - strand at 650.084 kb on - strand at 650.118 kb on - strand at 650.141 kb on + strand at 650.166 kb on + strand at 650.166 kb on + strand at 650.166 kb on + strand at 650.166 kb on + strand at 650.166 kb on + strand at 650.167 kb on - strand at 650.167 kb on - strand at 650.167 kb on - strand at 650.167 kb on - strand at 650.167 kb on - strand at 650.167 kb on - strand at 650.167 kb on - strand at 650.167 kb on - strand at 650.167 kb on - strand at 650.167 kb on - strand at 650.175 kb on - strand at 650.263 kb on + strand, within DDA3937_RS02935 at 650.263 kb on + strand, within DDA3937_RS02935 at 650.263 kb on + strand, within DDA3937_RS02935 at 650.264 kb on - strand, within DDA3937_RS02935 at 650.299 kb on + strand, within DDA3937_RS02935 at 650.375 kb on - strand, within DDA3937_RS02935 at 650.403 kb on + strand, within DDA3937_RS02935 at 650.403 kb on + strand, within DDA3937_RS02935 at 650.403 kb on + strand, within DDA3937_RS02935 at 650.403 kb on + strand, within DDA3937_RS02935 at 650.403 kb on + strand, within DDA3937_RS02935 at 650.403 kb on + strand, within DDA3937_RS02935 at 650.403 kb on + strand, within DDA3937_RS02935 at 650.404 kb on - strand, within DDA3937_RS02935 at 650.404 kb on - strand, within DDA3937_RS02935 at 650.404 kb on - strand, within DDA3937_RS02935 at 650.404 kb on - strand, within DDA3937_RS02935 at 650.426 kb on + strand, within DDA3937_RS02935 at 650.426 kb on + strand, within DDA3937_RS02935 at 650.427 kb on - strand, within DDA3937_RS02935 at 650.427 kb on - strand, within DDA3937_RS02935 at 650.545 kb on + strand, within DDA3937_RS02935 at 650.545 kb on + strand, within DDA3937_RS02935 at 650.545 kb on + strand, within DDA3937_RS02935 at 650.545 kb on + strand, within DDA3937_RS02935 at 650.545 kb on + strand, within DDA3937_RS02935 at 650.545 kb on + strand, within DDA3937_RS02935 at 650.545 kb on + strand, within DDA3937_RS02935 at 650.546 kb on - strand, within DDA3937_RS02935 at 650.546 kb on - strand, within DDA3937_RS02935 at 650.546 kb on - strand, within DDA3937_RS02935 at 650.546 kb on - strand, within DDA3937_RS02935 at 650.546 kb on - strand, within DDA3937_RS02935 at 650.546 kb on - strand, within DDA3937_RS02935 at 650.546 kb on - strand, within DDA3937_RS02935 at 650.546 kb on - strand, within DDA3937_RS02935 at 650.679 kb on - strand, within DDA3937_RS02935 at 650.679 kb on - strand, within DDA3937_RS02935 at 650.749 kb on + strand, within DDA3937_RS02935 at 650.749 kb on + strand, within DDA3937_RS02935 at 650.761 kb on - strand, within DDA3937_RS02935 at 650.843 kb on + strand, within DDA3937_RS02935 at 650.843 kb on + strand, within DDA3937_RS02935 at 650.844 kb on - strand, within DDA3937_RS02935 at 650.844 kb on - strand, within DDA3937_RS02935 at 650.844 kb on - strand, within DDA3937_RS02935 at 650.845 kb on + strand, within DDA3937_RS02935 at 650.846 kb on - strand, within DDA3937_RS02935 at 650.846 kb on - strand, within DDA3937_RS02935 at 650.931 kb on - strand, within DDA3937_RS02935 at 650.964 kb on + strand, within DDA3937_RS02935 at 650.979 kb on - strand, within DDA3937_RS02935 at 651.011 kb on + strand, within DDA3937_RS02935 at 651.094 kb on - strand at 651.119 kb on + strand at 651.120 kb on - strand at 651.120 kb on - strand at 651.142 kb on - strand at 651.167 kb on + strand at 651.167 kb on + strand at 651.167 kb on + strand at 651.167 kb on + strand at 651.167 kb on + strand at 651.167 kb on + strand at 651.167 kb on + strand at 651.167 kb on + strand at 651.168 kb on - strand at 651.168 kb on - strand at 651.168 kb on - strand at 651.168 kb on - strand at 651.168 kb on - strand at 651.168 kb on - strand at 651.168 kb on - strand at 651.168 kb on - strand at 651.168 kb on - strand at 651.168 kb on - strand at 651.174 kb on + strand at 651.175 kb on - strand at 651.175 kb on - strand at 651.210 kb on + strand at 651.210 kb on + strand at 651.211 kb on - strand at 651.211 kb on - strand at 651.232 kb on - strand at 651.439 kb on - strand at 651.452 kb on + strand at 651.452 kb on + strand at 651.453 kb on - strand at 651.464 kb on - strand at 651.464 kb on - strand at 651.466 kb on - strand at 651.476 kb on + strand at 651.506 kb on + strand at 651.506 kb on + strand at 651.506 kb on + strand at 651.558 kb on + strand at 651.559 kb on - strand at 651.559 kb on - strand at 651.559 kb on - strand at 651.595 kb on + strand at 651.595 kb on + strand at 651.596 kb on - strand at 651.596 kb on - strand at 651.605 kb on - strand at 651.661 kb on + strand at 651.662 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 649,142 - +0.3 649,153 + +0.3 649,153 + -0.1 649,154 - -1.1 649,154 - +0.5 649,202 - -0.1 649,229 + DDA3937_RS02930 0.11 -1.9 649,229 + DDA3937_RS02930 0.11 -0.9 649,230 - DDA3937_RS02930 0.11 +0.2 649,232 - DDA3937_RS02930 0.11 -1.9 649,232 - DDA3937_RS02930 0.11 -0.3 649,232 - DDA3937_RS02930 0.11 -1.9 649,232 - DDA3937_RS02930 0.11 -0.6 649,236 + DDA3937_RS02930 0.11 -0.0 649,236 + DDA3937_RS02930 0.11 +1.5 649,236 + DDA3937_RS02930 0.11 +1.0 649,236 + DDA3937_RS02930 0.11 +0.2 649,236 + DDA3937_RS02930 0.11 -2.0 649,237 - DDA3937_RS02930 0.12 -0.3 649,237 - DDA3937_RS02930 0.12 -0.5 649,237 - DDA3937_RS02930 0.12 +0.1 649,237 - DDA3937_RS02930 0.12 -0.7 649,238 + DDA3937_RS02930 0.12 -0.6 649,238 + DDA3937_RS02930 0.12 -0.6 649,238 + DDA3937_RS02930 0.12 +0.5 649,238 + DDA3937_RS02930 0.12 +0.1 649,239 - DDA3937_RS02930 0.12 -0.5 649,239 - DDA3937_RS02930 0.12 -1.5 649,239 - DDA3937_RS02930 0.12 +0.7 649,239 - DDA3937_RS02930 0.12 -0.5 649,368 + DDA3937_RS02930 0.27 +1.2 649,369 - DDA3937_RS02930 0.28 -1.6 649,378 + DDA3937_RS02930 0.29 -0.6 649,436 - DDA3937_RS02930 0.36 -0.4 649,555 - DDA3937_RS02930 0.50 +0.1 649,578 - DDA3937_RS02930 0.53 -0.1 649,632 + DDA3937_RS02930 0.60 -0.7 649,632 + DDA3937_RS02930 0.60 -1.2 649,632 + DDA3937_RS02930 0.60 -0.5 649,633 - DDA3937_RS02930 0.60 -0.1 649,633 - DDA3937_RS02930 0.60 +0.3 649,633 - DDA3937_RS02930 0.60 -0.1 649,633 - DDA3937_RS02930 0.60 +0.5 649,633 - DDA3937_RS02930 0.60 -0.7 649,633 - DDA3937_RS02930 0.60 -0.6 649,633 - DDA3937_RS02930 0.60 +0.0 649,637 - DDA3937_RS02930 0.60 +0.0 649,637 - DDA3937_RS02930 0.60 -0.5 649,637 - DDA3937_RS02930 0.60 -0.6 649,637 - DDA3937_RS02930 0.60 +0.3 649,637 - DDA3937_RS02930 0.60 -0.1 649,674 - DDA3937_RS02930 0.65 -0.2 649,803 + DDA3937_RS02930 0.80 -0.4 649,933 + -1.2 649,934 - -0.9 649,934 - -0.4 650,006 - -0.8 650,084 - -1.2 650,118 - +0.5 650,141 + +0.0 650,166 + +0.6 650,166 + -0.1 650,166 + +0.0 650,166 + -0.7 650,166 + -0.7 650,167 - -0.6 650,167 - -2.1 650,167 - +0.5 650,167 - +0.3 650,167 - -0.5 650,167 - +0.9 650,167 - -1.6 650,167 - -0.1 650,167 - -1.5 650,167 - -0.1 650,175 - -1.0 650,263 + DDA3937_RS02935 0.12 +1.5 650,263 + DDA3937_RS02935 0.12 +0.7 650,263 + DDA3937_RS02935 0.12 +0.5 650,264 - DDA3937_RS02935 0.12 -0.4 650,299 + DDA3937_RS02935 0.16 +0.3 650,375 - DDA3937_RS02935 0.23 +1.6 650,403 + DDA3937_RS02935 0.26 +1.6 650,403 + DDA3937_RS02935 0.26 -0.0 650,403 + DDA3937_RS02935 0.26 +0.3 650,403 + DDA3937_RS02935 0.26 -0.9 650,403 + DDA3937_RS02935 0.26 +0.8 650,403 + DDA3937_RS02935 0.26 +0.9 650,403 + DDA3937_RS02935 0.26 -0.4 650,404 - DDA3937_RS02935 0.26 +0.2 650,404 - DDA3937_RS02935 0.26 -0.0 650,404 - DDA3937_RS02935 0.26 +0.9 650,404 - DDA3937_RS02935 0.26 -0.3 650,426 + DDA3937_RS02935 0.28 -0.4 650,426 + DDA3937_RS02935 0.28 -0.3 650,427 - DDA3937_RS02935 0.28 +0.6 650,427 - DDA3937_RS02935 0.28 -1.3 650,545 + DDA3937_RS02935 0.40 +0.1 650,545 + DDA3937_RS02935 0.40 -0.3 650,545 + DDA3937_RS02935 0.40 +0.9 650,545 + DDA3937_RS02935 0.40 -0.1 650,545 + DDA3937_RS02935 0.40 +0.2 650,545 + DDA3937_RS02935 0.40 -0.1 650,545 + DDA3937_RS02935 0.40 -1.7 650,546 - DDA3937_RS02935 0.40 -1.1 650,546 - DDA3937_RS02935 0.40 +0.2 650,546 - DDA3937_RS02935 0.40 +0.3 650,546 - DDA3937_RS02935 0.40 -0.6 650,546 - DDA3937_RS02935 0.40 -0.3 650,546 - DDA3937_RS02935 0.40 +0.9 650,546 - DDA3937_RS02935 0.40 +0.5 650,546 - DDA3937_RS02935 0.40 +0.6 650,679 - DDA3937_RS02935 0.54 +0.1 650,679 - DDA3937_RS02935 0.54 +0.4 650,749 + DDA3937_RS02935 0.61 -1.8 650,749 + DDA3937_RS02935 0.61 -0.3 650,761 - DDA3937_RS02935 0.62 -0.1 650,843 + DDA3937_RS02935 0.70 -0.3 650,843 + DDA3937_RS02935 0.70 +1.9 650,844 - DDA3937_RS02935 0.70 -2.7 650,844 - DDA3937_RS02935 0.70 -0.2 650,844 - DDA3937_RS02935 0.70 -0.1 650,845 + DDA3937_RS02935 0.70 +1.3 650,846 - DDA3937_RS02935 0.70 -1.5 650,846 - DDA3937_RS02935 0.70 -0.1 650,931 - DDA3937_RS02935 0.79 -0.0 650,964 + DDA3937_RS02935 0.82 +1.2 650,979 - DDA3937_RS02935 0.84 +0.3 651,011 + DDA3937_RS02935 0.87 -0.4 651,094 - -0.1 651,119 + +0.6 651,120 - -0.2 651,120 - +0.5 651,142 - -0.4 651,167 + -1.7 651,167 + -0.1 651,167 + +0.5 651,167 + -0.9 651,167 + -0.4 651,167 + +0.1 651,167 + -0.9 651,167 + +0.5 651,168 - -0.6 651,168 - +0.0 651,168 - +0.9 651,168 - -0.6 651,168 - -1.5 651,168 - +0.1 651,168 - +0.4 651,168 - +0.4 651,168 - -1.4 651,168 - +0.9 651,174 + -0.4 651,175 - -1.3 651,175 - -0.6 651,210 + -0.2 651,210 + +0.6 651,211 - +1.5 651,211 - +0.2 651,232 - -1.1 651,439 - -0.1 651,452 + +0.5 651,452 + -0.1 651,453 - -0.8 651,464 - -1.0 651,464 - -1.2 651,466 - -0.2 651,476 + -0.3 651,506 + +0.1 651,506 + +0.4 651,506 + -1.1 651,558 + -0.6 651,559 - +1.9 651,559 - -0.5 651,559 - -0.1 651,595 + +0.8 651,595 + -0.5 651,596 - +0.5 651,596 - -2.3 651,605 - -0.4 651,661 + -1.9 651,662 - +0.5
Or see this region's nucleotide sequence