Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS02915

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDDA3937_RS02910 and DDA3937_RS02915 are separated by 12 nucleotidesDDA3937_RS02915 and DDA3937_RS02920 are separated by 93 nucleotides DDA3937_RS02910: DDA3937_RS02910 - FAD:protein FMN transferase, at 645,429 to 646,409 _RS02910 DDA3937_RS02915: DDA3937_RS02915 - TetR/AcrR family transcriptional regulator, at 646,422 to 647,003 _RS02915 DDA3937_RS02920: DDA3937_RS02920 - aldo/keto reductase, at 647,097 to 648,146 _RS02920 Position (kb) 646 647 648Strain fitness (log2 ratio) -2 -1 0 1 2at 645.456 kb on + strandat 645.614 kb on + strand, within DDA3937_RS02910at 645.656 kb on + strand, within DDA3937_RS02910at 645.657 kb on - strand, within DDA3937_RS02910at 645.891 kb on + strandat 645.891 kb on + strand, within DDA3937_RS02910at 645.891 kb on + strand, within DDA3937_RS02910at 645.891 kb on + strand, within DDA3937_RS02910at 645.891 kb on + strand, within DDA3937_RS02910at 645.892 kb on - strand, within DDA3937_RS02910at 645.892 kb on - strand, within DDA3937_RS02910at 645.892 kb on - strand, within DDA3937_RS02910at 645.892 kb on - strand, within DDA3937_RS02910at 645.893 kb on + strandat 645.894 kb on - strand, within DDA3937_RS02910at 645.936 kb on + strand, within DDA3937_RS02910at 645.936 kb on + strand, within DDA3937_RS02910at 645.936 kb on + strand, within DDA3937_RS02910at 645.936 kb on + strand, within DDA3937_RS02910at 645.936 kb on + strand, within DDA3937_RS02910at 645.936 kb on + strand, within DDA3937_RS02910at 645.937 kb on - strand, within DDA3937_RS02910at 645.937 kb on - strand, within DDA3937_RS02910at 646.102 kb on - strand, within DDA3937_RS02910at 646.110 kb on + strand, within DDA3937_RS02910at 646.110 kb on + strand, within DDA3937_RS02910at 646.110 kb on + strand, within DDA3937_RS02910at 646.110 kb on + strand, within DDA3937_RS02910at 646.111 kb on - strand, within DDA3937_RS02910at 646.111 kb on - strand, within DDA3937_RS02910at 646.111 kb on - strand, within DDA3937_RS02910at 646.135 kb on - strand, within DDA3937_RS02910at 646.135 kb on - strand, within DDA3937_RS02910at 646.135 kb on - strand, within DDA3937_RS02910at 646.135 kb on - strand, within DDA3937_RS02910at 646.135 kb on - strand, within DDA3937_RS02910at 646.142 kb on + strand, within DDA3937_RS02910at 646.143 kb on - strand, within DDA3937_RS02910at 646.143 kb on - strand, within DDA3937_RS02910at 646.143 kb on - strand, within DDA3937_RS02910at 646.143 kb on - strand, within DDA3937_RS02910at 646.230 kb on + strand, within DDA3937_RS02910at 646.230 kb on + strand, within DDA3937_RS02910at 646.230 kb on + strand, within DDA3937_RS02910at 646.230 kb on + strand, within DDA3937_RS02910at 646.230 kb on + strand, within DDA3937_RS02910at 646.230 kb on + strand, within DDA3937_RS02910at 646.230 kb on + strand, within DDA3937_RS02910at 646.231 kb on - strand, within DDA3937_RS02910at 646.231 kb on - strand, within DDA3937_RS02910at 646.231 kb on - strand, within DDA3937_RS02910at 646.231 kb on - strand, within DDA3937_RS02910at 646.231 kb on - strand, within DDA3937_RS02910at 646.231 kb on - strand, within DDA3937_RS02910at 646.231 kb on - strand, within DDA3937_RS02910at 646.231 kb on - strand, within DDA3937_RS02910at 646.231 kb on - strand, within DDA3937_RS02910at 646.275 kb on + strand, within DDA3937_RS02910at 646.275 kb on + strand, within DDA3937_RS02910at 646.275 kb on + strand, within DDA3937_RS02910at 646.276 kb on - strand, within DDA3937_RS02910at 646.276 kb on - strand, within DDA3937_RS02910at 646.353 kb on + strandat 646.354 kb on - strandat 646.354 kb on - strandat 646.361 kb on + strandat 646.362 kb on - strandat 646.381 kb on - strandat 646.381 kb on - strandat 646.381 kb on - strandat 646.389 kb on + strandat 646.390 kb on - strandat 646.390 kb on - strandat 646.390 kb on - strandat 646.390 kb on - strandat 646.397 kb on - strandat 646.423 kb on + strandat 646.424 kb on - strandat 646.622 kb on - strand, within DDA3937_RS02915at 646.727 kb on - strand, within DDA3937_RS02915at 646.727 kb on - strand, within DDA3937_RS02915at 646.727 kb on - strand, within DDA3937_RS02915at 646.735 kb on - strandat 646.735 kb on - strand, within DDA3937_RS02915at 646.788 kb on + strand, within DDA3937_RS02915at 646.788 kb on + strand, within DDA3937_RS02915at 646.788 kb on + strand, within DDA3937_RS02915at 646.788 kb on + strand, within DDA3937_RS02915at 646.788 kb on + strand, within DDA3937_RS02915at 646.788 kb on + strand, within DDA3937_RS02915at 646.789 kb on - strand, within DDA3937_RS02915at 646.789 kb on - strand, within DDA3937_RS02915at 646.789 kb on - strand, within DDA3937_RS02915at 646.811 kb on + strand, within DDA3937_RS02915at 646.830 kb on + strand, within DDA3937_RS02915at 646.830 kb on + strand, within DDA3937_RS02915at 646.830 kb on + strand, within DDA3937_RS02915at 646.858 kb on + strandat 646.858 kb on + strand, within DDA3937_RS02915at 646.859 kb on - strand, within DDA3937_RS02915at 646.992 kb on + strandat 647.037 kb on + strandat 647.037 kb on + strandat 647.037 kb on + strandat 647.037 kb on + strandat 647.037 kb on + strandat 647.037 kb on + strandat 647.038 kb on - strandat 647.038 kb on - strandat 647.038 kb on - strandat 647.038 kb on - strandat 647.050 kb on + strandat 647.062 kb on + strandat 647.062 kb on + strandat 647.169 kb on + strandat 647.170 kb on - strandat 647.238 kb on + strand, within DDA3937_RS02920at 647.238 kb on + strand, within DDA3937_RS02920at 647.238 kb on + strand, within DDA3937_RS02920at 647.238 kb on + strand, within DDA3937_RS02920at 647.239 kb on - strand, within DDA3937_RS02920at 647.239 kb on - strand, within DDA3937_RS02920at 647.264 kb on + strand, within DDA3937_RS02920at 647.264 kb on + strand, within DDA3937_RS02920at 647.264 kb on + strand, within DDA3937_RS02920at 647.264 kb on + strand, within DDA3937_RS02920at 647.265 kb on - strand, within DDA3937_RS02920at 647.265 kb on - strandat 647.265 kb on - strand, within DDA3937_RS02920at 647.301 kb on - strand, within DDA3937_RS02920at 647.301 kb on - strand, within DDA3937_RS02920at 647.593 kb on + strandat 647.594 kb on - strand, within DDA3937_RS02920at 647.594 kb on - strand, within DDA3937_RS02920at 647.615 kb on + strand, within DDA3937_RS02920at 647.615 kb on + strand, within DDA3937_RS02920at 647.692 kb on + strand, within DDA3937_RS02920at 647.781 kb on + strand, within DDA3937_RS02920at 647.782 kb on - strand, within DDA3937_RS02920at 647.782 kb on - strand, within DDA3937_RS02920at 647.782 kb on - strand, within DDA3937_RS02920at 647.784 kb on - strand, within DDA3937_RS02920at 647.784 kb on - strand, within DDA3937_RS02920at 647.784 kb on - strand, within DDA3937_RS02920at 647.789 kb on + strand, within DDA3937_RS02920at 647.790 kb on - strand, within DDA3937_RS02920at 647.844 kb on - strand, within DDA3937_RS02920at 647.844 kb on - strand, within DDA3937_RS02920at 647.889 kb on + strand, within DDA3937_RS02920at 647.890 kb on - strand, within DDA3937_RS02920at 647.890 kb on - strand, within DDA3937_RS02920at 647.890 kb on - strand, within DDA3937_RS02920at 647.896 kb on + strand, within DDA3937_RS02920at 647.896 kb on + strand, within DDA3937_RS02920at 647.896 kb on + strand, within DDA3937_RS02920at 647.897 kb on - strand, within DDA3937_RS02920at 647.897 kb on - strand, within DDA3937_RS02920at 647.897 kb on - strand, within DDA3937_RS02920at 647.897 kb on - strand, within DDA3937_RS02920at 647.974 kb on + strand, within DDA3937_RS02920at 647.994 kb on - strand, within DDA3937_RS02920

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
645,456 + -2.0
645,614 + DDA3937_RS02910 0.19 +1.1
645,656 + DDA3937_RS02910 0.23 +0.0
645,657 - DDA3937_RS02910 0.23 +0.0
645,891 + -0.7
645,891 + DDA3937_RS02910 0.47 -1.4
645,891 + DDA3937_RS02910 0.47 -0.3
645,891 + DDA3937_RS02910 0.47 -0.7
645,891 + DDA3937_RS02910 0.47 +0.4
645,892 - DDA3937_RS02910 0.47 -0.7
645,892 - DDA3937_RS02910 0.47 +0.7
645,892 - DDA3937_RS02910 0.47 -1.9
645,892 - DDA3937_RS02910 0.47 -2.3
645,893 + -0.7
645,894 - DDA3937_RS02910 0.47 -1.1
645,936 + DDA3937_RS02910 0.52 +1.1
645,936 + DDA3937_RS02910 0.52 +0.3
645,936 + DDA3937_RS02910 0.52 +0.4
645,936 + DDA3937_RS02910 0.52 -0.7
645,936 + DDA3937_RS02910 0.52 -1.3
645,936 + DDA3937_RS02910 0.52 -0.2
645,937 - DDA3937_RS02910 0.52 +0.0
645,937 - DDA3937_RS02910 0.52 -0.9
646,102 - DDA3937_RS02910 0.69 -0.2
646,110 + DDA3937_RS02910 0.69 -1.5
646,110 + DDA3937_RS02910 0.69 -1.8
646,110 + DDA3937_RS02910 0.69 -0.3
646,110 + DDA3937_RS02910 0.69 -0.0
646,111 - DDA3937_RS02910 0.70 -1.5
646,111 - DDA3937_RS02910 0.70 +0.1
646,111 - DDA3937_RS02910 0.70 -0.7
646,135 - DDA3937_RS02910 0.72 -0.7
646,135 - DDA3937_RS02910 0.72 -0.8
646,135 - DDA3937_RS02910 0.72 -0.1
646,135 - DDA3937_RS02910 0.72 -0.1
646,135 - DDA3937_RS02910 0.72 -2.5
646,142 + DDA3937_RS02910 0.73 +0.6
646,143 - DDA3937_RS02910 0.73 -0.2
646,143 - DDA3937_RS02910 0.73 -0.1
646,143 - DDA3937_RS02910 0.73 -0.1
646,143 - DDA3937_RS02910 0.73 -0.1
646,230 + DDA3937_RS02910 0.82 +0.9
646,230 + DDA3937_RS02910 0.82 +0.2
646,230 + DDA3937_RS02910 0.82 -0.1
646,230 + DDA3937_RS02910 0.82 +0.0
646,230 + DDA3937_RS02910 0.82 +0.3
646,230 + DDA3937_RS02910 0.82 +0.9
646,230 + DDA3937_RS02910 0.82 -0.1
646,231 - DDA3937_RS02910 0.82 -0.3
646,231 - DDA3937_RS02910 0.82 +0.4
646,231 - DDA3937_RS02910 0.82 +1.1
646,231 - DDA3937_RS02910 0.82 +0.1
646,231 - DDA3937_RS02910 0.82 +0.0
646,231 - DDA3937_RS02910 0.82 +0.0
646,231 - DDA3937_RS02910 0.82 +0.3
646,231 - DDA3937_RS02910 0.82 -0.8
646,231 - DDA3937_RS02910 0.82 +0.1
646,275 + DDA3937_RS02910 0.86 -0.3
646,275 + DDA3937_RS02910 0.86 +0.5
646,275 + DDA3937_RS02910 0.86 +0.3
646,276 - DDA3937_RS02910 0.86 -0.1
646,276 - DDA3937_RS02910 0.86 -0.2
646,353 + +0.4
646,354 - -0.3
646,354 - -0.9
646,361 + -0.5
646,362 - +0.1
646,381 - -2.1
646,381 - -0.1
646,381 - -0.8
646,389 + -0.3
646,390 - +0.3
646,390 - +0.5
646,390 - +0.6
646,390 - -0.0
646,397 - -0.7
646,423 + +0.2
646,424 - -1.5
646,622 - DDA3937_RS02915 0.34 +0.1
646,727 - DDA3937_RS02915 0.52 +0.3
646,727 - DDA3937_RS02915 0.52 -0.5
646,727 - DDA3937_RS02915 0.52 -0.8
646,735 - -1.5
646,735 - DDA3937_RS02915 0.54 -0.7
646,788 + DDA3937_RS02915 0.63 -0.7
646,788 + DDA3937_RS02915 0.63 -0.5
646,788 + DDA3937_RS02915 0.63 -1.1
646,788 + DDA3937_RS02915 0.63 -1.1
646,788 + DDA3937_RS02915 0.63 -1.7
646,788 + DDA3937_RS02915 0.63 -1.0
646,789 - DDA3937_RS02915 0.63 -1.1
646,789 - DDA3937_RS02915 0.63 -1.5
646,789 - DDA3937_RS02915 0.63 -0.9
646,811 + DDA3937_RS02915 0.67 -1.5
646,830 + DDA3937_RS02915 0.70 +0.1
646,830 + DDA3937_RS02915 0.70 -1.9
646,830 + DDA3937_RS02915 0.70 -0.5
646,858 + +0.3
646,858 + DDA3937_RS02915 0.75 +0.2
646,859 - DDA3937_RS02915 0.75 -2.4
646,992 + -0.7
647,037 + +0.3
647,037 + -0.5
647,037 + -1.5
647,037 + +0.6
647,037 + -0.1
647,037 + -1.5
647,038 - +0.6
647,038 - +0.1
647,038 - -0.3
647,038 - -0.1
647,050 + -0.1
647,062 + +1.2
647,062 + -0.7
647,169 + -1.1
647,170 - -0.4
647,238 + DDA3937_RS02920 0.13 +0.6
647,238 + DDA3937_RS02920 0.13 -1.4
647,238 + DDA3937_RS02920 0.13 +1.9
647,238 + DDA3937_RS02920 0.13 +0.0
647,239 - DDA3937_RS02920 0.14 -2.5
647,239 - DDA3937_RS02920 0.14 -0.9
647,264 + DDA3937_RS02920 0.16 -0.3
647,264 + DDA3937_RS02920 0.16 +0.3
647,264 + DDA3937_RS02920 0.16 +0.4
647,264 + DDA3937_RS02920 0.16 -1.9
647,265 - DDA3937_RS02920 0.16 -0.2
647,265 - -1.1
647,265 - DDA3937_RS02920 0.16 +0.7
647,301 - DDA3937_RS02920 0.19 +0.2
647,301 - DDA3937_RS02920 0.19 -0.0
647,593 + -1.1
647,594 - DDA3937_RS02920 0.47 -0.6
647,594 - DDA3937_RS02920 0.47 -1.7
647,615 + DDA3937_RS02920 0.49 +0.2
647,615 + DDA3937_RS02920 0.49 -0.2
647,692 + DDA3937_RS02920 0.57 +0.5
647,781 + DDA3937_RS02920 0.65 +0.3
647,782 - DDA3937_RS02920 0.65 -0.8
647,782 - DDA3937_RS02920 0.65 +0.2
647,782 - DDA3937_RS02920 0.65 -1.3
647,784 - DDA3937_RS02920 0.65 -0.7
647,784 - DDA3937_RS02920 0.65 -1.1
647,784 - DDA3937_RS02920 0.65 +0.3
647,789 + DDA3937_RS02920 0.66 -0.6
647,790 - DDA3937_RS02920 0.66 -0.1
647,844 - DDA3937_RS02920 0.71 -1.0
647,844 - DDA3937_RS02920 0.71 +0.4
647,889 + DDA3937_RS02920 0.75 -0.7
647,890 - DDA3937_RS02920 0.76 +0.1
647,890 - DDA3937_RS02920 0.76 -0.1
647,890 - DDA3937_RS02920 0.76 +0.5
647,896 + DDA3937_RS02920 0.76 -1.1
647,896 + DDA3937_RS02920 0.76 -0.2
647,896 + DDA3937_RS02920 0.76 -1.9
647,897 - DDA3937_RS02920 0.76 -1.0
647,897 - DDA3937_RS02920 0.76 -0.2
647,897 - DDA3937_RS02920 0.76 +0.7
647,897 - DDA3937_RS02920 0.76 -1.5
647,974 + DDA3937_RS02920 0.84 +0.0
647,994 - DDA3937_RS02920 0.85 +0.7

Or see this region's nucleotide sequence