Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02860 and DDA3937_RS02865 are separated by 591 nucleotides DDA3937_RS02865 and DDA3937_RS02870 overlap by 1 nucleotides
DDA3937_RS02860: DDA3937_RS02860 - pectate lyase, at 630,535 to 631,482
_RS02860
DDA3937_RS02865: DDA3937_RS02865 - transcriptional regulator UhpA, at 632,074 to 632,664
_RS02865
DDA3937_RS02870: DDA3937_RS02870 - signal transduction histidine-protein kinase/phosphatase UhpB, at 632,664 to 634,175
_RS02870
Position (kb) 632
633 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 631.084 kb on + strand, within DDA3937_RS02860 at 631.084 kb on + strand, within DDA3937_RS02860 at 631.084 kb on + strand, within DDA3937_RS02860 at 631.085 kb on - strand, within DDA3937_RS02860 at 631.108 kb on - strand, within DDA3937_RS02860 at 631.120 kb on + strand, within DDA3937_RS02860 at 631.120 kb on + strand, within DDA3937_RS02860 at 631.121 kb on - strand, within DDA3937_RS02860 at 631.121 kb on - strand, within DDA3937_RS02860 at 631.131 kb on + strand, within DDA3937_RS02860 at 631.131 kb on + strand, within DDA3937_RS02860 at 631.135 kb on + strand, within DDA3937_RS02860 at 631.168 kb on + strand, within DDA3937_RS02860 at 631.169 kb on - strand, within DDA3937_RS02860 at 631.169 kb on - strand, within DDA3937_RS02860 at 631.180 kb on + strand, within DDA3937_RS02860 at 631.180 kb on + strand, within DDA3937_RS02860 at 631.180 kb on + strand, within DDA3937_RS02860 at 631.180 kb on + strand, within DDA3937_RS02860 at 631.181 kb on - strand, within DDA3937_RS02860 at 631.181 kb on - strand, within DDA3937_RS02860 at 631.181 kb on - strand, within DDA3937_RS02860 at 631.181 kb on - strand, within DDA3937_RS02860 at 631.201 kb on + strand, within DDA3937_RS02860 at 631.202 kb on - strand, within DDA3937_RS02860 at 631.202 kb on - strand, within DDA3937_RS02860 at 631.215 kb on + strand, within DDA3937_RS02860 at 631.216 kb on - strand, within DDA3937_RS02860 at 631.249 kb on + strand, within DDA3937_RS02860 at 631.249 kb on + strand, within DDA3937_RS02860 at 631.249 kb on + strand, within DDA3937_RS02860 at 631.250 kb on - strand, within DDA3937_RS02860 at 631.251 kb on + strand, within DDA3937_RS02860 at 631.252 kb on - strand, within DDA3937_RS02860 at 631.252 kb on - strand at 631.255 kb on + strand, within DDA3937_RS02860 at 631.255 kb on + strand, within DDA3937_RS02860 at 631.255 kb on + strand, within DDA3937_RS02860 at 631.255 kb on + strand, within DDA3937_RS02860 at 631.255 kb on + strand, within DDA3937_RS02860 at 631.255 kb on + strand, within DDA3937_RS02860 at 631.332 kb on + strand, within DDA3937_RS02860 at 631.390 kb on + strand at 631.390 kb on + strand at 631.391 kb on - strand at 631.397 kb on - strand at 631.397 kb on - strand at 631.397 kb on - strand at 631.397 kb on - strand at 631.442 kb on - strand at 631.481 kb on - strand at 631.485 kb on + strand at 631.522 kb on + strand at 631.523 kb on - strand at 631.532 kb on + strand at 631.532 kb on + strand at 631.532 kb on + strand at 631.532 kb on + strand at 631.532 kb on + strand at 631.532 kb on + strand at 631.532 kb on + strand at 631.532 kb on + strand at 631.532 kb on + strand at 631.532 kb on + strand at 631.532 kb on + strand at 631.532 kb on + strand at 631.533 kb on - strand at 631.533 kb on - strand at 631.533 kb on - strand at 631.533 kb on - strand at 631.533 kb on - strand at 631.533 kb on - strand at 631.533 kb on - strand at 631.533 kb on - strand at 631.533 kb on - strand at 631.533 kb on - strand at 631.533 kb on - strand at 631.533 kb on - strand at 631.533 kb on - strand at 631.533 kb on - strand at 631.533 kb on - strand at 631.533 kb on - strand at 631.533 kb on - strand at 631.533 kb on - strand at 631.573 kb on + strand at 631.573 kb on + strand at 631.573 kb on + strand at 631.589 kb on - strand at 631.597 kb on + strand at 631.597 kb on + strand at 631.598 kb on - strand at 631.911 kb on + strand at 631.911 kb on + strand at 631.911 kb on + strand at 631.911 kb on + strand at 631.911 kb on + strand at 631.912 kb on - strand at 631.912 kb on - strand at 631.912 kb on - strand at 631.912 kb on - strand at 631.912 kb on - strand at 631.912 kb on - strand at 631.912 kb on - strand at 631.912 kb on - strand at 631.915 kb on + strand at 631.915 kb on + strand at 631.915 kb on + strand at 631.915 kb on + strand at 631.974 kb on + strand at 631.975 kb on - strand at 632.038 kb on + strand at 632.038 kb on + strand at 632.039 kb on - strand at 632.044 kb on - strand at 632.044 kb on - strand at 632.044 kb on - strand at 632.106 kb on + strand at 632.106 kb on + strand at 632.106 kb on + strand at 632.106 kb on + strand at 632.106 kb on + strand at 632.107 kb on - strand at 632.107 kb on - strand at 632.107 kb on - strand at 632.107 kb on - strand at 632.107 kb on - strand at 632.226 kb on + strand, within DDA3937_RS02865 at 632.226 kb on + strand, within DDA3937_RS02865 at 632.226 kb on + strand, within DDA3937_RS02865 at 632.226 kb on + strand, within DDA3937_RS02865 at 632.226 kb on + strand, within DDA3937_RS02865 at 632.227 kb on - strand, within DDA3937_RS02865 at 632.301 kb on + strand, within DDA3937_RS02865 at 632.301 kb on + strand, within DDA3937_RS02865 at 632.301 kb on + strand, within DDA3937_RS02865 at 632.302 kb on - strand, within DDA3937_RS02865 at 632.302 kb on - strand, within DDA3937_RS02865 at 632.302 kb on - strand, within DDA3937_RS02865 at 632.435 kb on - strand, within DDA3937_RS02865 at 632.435 kb on - strand, within DDA3937_RS02865 at 632.580 kb on - strand, within DDA3937_RS02865 at 632.712 kb on - strand at 632.821 kb on + strand, within DDA3937_RS02870 at 632.821 kb on + strand, within DDA3937_RS02870 at 632.821 kb on + strand, within DDA3937_RS02870 at 632.822 kb on - strand, within DDA3937_RS02870 at 632.822 kb on - strand, within DDA3937_RS02870 at 632.822 kb on - strand, within DDA3937_RS02870 at 633.071 kb on + strand, within DDA3937_RS02870 at 633.071 kb on + strand, within DDA3937_RS02870 at 633.071 kb on + strand, within DDA3937_RS02870 at 633.072 kb on - strand, within DDA3937_RS02870 at 633.077 kb on + strand, within DDA3937_RS02870 at 633.078 kb on - strand, within DDA3937_RS02870 at 633.144 kb on + strand, within DDA3937_RS02870 at 633.144 kb on + strand, within DDA3937_RS02870 at 633.145 kb on - strand, within DDA3937_RS02870 at 633.145 kb on - strand, within DDA3937_RS02870 at 633.145 kb on - strand, within DDA3937_RS02870 at 633.228 kb on + strand, within DDA3937_RS02870 at 633.229 kb on - strand, within DDA3937_RS02870 at 633.340 kb on - strand, within DDA3937_RS02870 at 633.427 kb on + strand, within DDA3937_RS02870 at 633.427 kb on + strand, within DDA3937_RS02870 at 633.427 kb on + strand, within DDA3937_RS02870 at 633.427 kb on + strand, within DDA3937_RS02870 at 633.428 kb on - strand, within DDA3937_RS02870 at 633.428 kb on - strand, within DDA3937_RS02870 at 633.428 kb on - strand, within DDA3937_RS02870 at 633.428 kb on - strand, within DDA3937_RS02870 at 633.430 kb on + strand, within DDA3937_RS02870 at 633.479 kb on + strand, within DDA3937_RS02870 at 633.501 kb on - strand, within DDA3937_RS02870 at 633.501 kb on - strand, within DDA3937_RS02870 at 633.620 kb on + strand, within DDA3937_RS02870 at 633.620 kb on + strand, within DDA3937_RS02870 at 633.620 kb on + strand, within DDA3937_RS02870 at 633.620 kb on + strand, within DDA3937_RS02870 at 633.620 kb on + strand, within DDA3937_RS02870 at 633.620 kb on + strand, within DDA3937_RS02870 at 633.620 kb on + strand, within DDA3937_RS02870 at 633.621 kb on - strand, within DDA3937_RS02870 at 633.621 kb on - strand, within DDA3937_RS02870 at 633.621 kb on - strand, within DDA3937_RS02870 at 633.621 kb on - strand, within DDA3937_RS02870 at 633.621 kb on - strand, within DDA3937_RS02870 at 633.621 kb on - strand, within DDA3937_RS02870 at 633.621 kb on - strand, within DDA3937_RS02870 at 633.623 kb on + strand, within DDA3937_RS02870
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 631,084 + DDA3937_RS02860 0.58 -0.2 631,084 + DDA3937_RS02860 0.58 +0.4 631,084 + DDA3937_RS02860 0.58 -0.2 631,085 - DDA3937_RS02860 0.58 -0.7 631,108 - DDA3937_RS02860 0.60 -0.5 631,120 + DDA3937_RS02860 0.62 -0.1 631,120 + DDA3937_RS02860 0.62 -0.1 631,121 - DDA3937_RS02860 0.62 -0.1 631,121 - DDA3937_RS02860 0.62 +0.4 631,131 + DDA3937_RS02860 0.63 -1.0 631,131 + DDA3937_RS02860 0.63 +0.3 631,135 + DDA3937_RS02860 0.63 +0.0 631,168 + DDA3937_RS02860 0.67 -1.3 631,169 - DDA3937_RS02860 0.67 -0.7 631,169 - DDA3937_RS02860 0.67 -1.1 631,180 + DDA3937_RS02860 0.68 +1.2 631,180 + DDA3937_RS02860 0.68 -0.3 631,180 + DDA3937_RS02860 0.68 -0.5 631,180 + DDA3937_RS02860 0.68 -0.1 631,181 - DDA3937_RS02860 0.68 -1.1 631,181 - DDA3937_RS02860 0.68 -1.1 631,181 - DDA3937_RS02860 0.68 -0.8 631,181 - DDA3937_RS02860 0.68 +0.6 631,201 + DDA3937_RS02860 0.70 -0.8 631,202 - DDA3937_RS02860 0.70 +0.5 631,202 - DDA3937_RS02860 0.70 +0.9 631,215 + DDA3937_RS02860 0.72 -1.0 631,216 - DDA3937_RS02860 0.72 +0.6 631,249 + DDA3937_RS02860 0.75 +1.5 631,249 + DDA3937_RS02860 0.75 +0.5 631,249 + DDA3937_RS02860 0.75 -0.9 631,250 - DDA3937_RS02860 0.75 +0.3 631,251 + DDA3937_RS02860 0.76 +0.2 631,252 - DDA3937_RS02860 0.76 +0.9 631,252 - +2.9 631,255 + DDA3937_RS02860 0.76 +0.1 631,255 + DDA3937_RS02860 0.76 -0.1 631,255 + DDA3937_RS02860 0.76 +0.0 631,255 + DDA3937_RS02860 0.76 +1.3 631,255 + DDA3937_RS02860 0.76 -0.9 631,255 + DDA3937_RS02860 0.76 +0.4 631,332 + DDA3937_RS02860 0.84 +0.4 631,390 + -0.8 631,390 + -1.0 631,391 - -0.0 631,397 - -0.1 631,397 - -0.6 631,397 - +0.2 631,397 - -2.5 631,442 - -0.8 631,481 - -0.0 631,485 + -0.7 631,522 + +0.4 631,523 - +0.1 631,532 + -0.9 631,532 + -0.6 631,532 + +0.0 631,532 + -1.1 631,532 + -0.0 631,532 + -0.5 631,532 + -2.6 631,532 + -0.5 631,532 + -1.0 631,532 + -0.2 631,532 + -1.8 631,532 + +0.5 631,533 - -0.5 631,533 - -0.4 631,533 - -0.8 631,533 - -0.6 631,533 - -0.7 631,533 - +0.4 631,533 - -1.1 631,533 - -0.9 631,533 - -0.9 631,533 - -0.2 631,533 - -0.9 631,533 - +0.6 631,533 - -0.9 631,533 - -0.1 631,533 - -0.4 631,533 - -1.5 631,533 - +1.5 631,533 - -0.6 631,573 + +0.7 631,573 + -0.8 631,573 + -0.1 631,589 - +0.1 631,597 + +0.9 631,597 + -0.3 631,598 - +0.3 631,911 + -0.7 631,911 + -0.1 631,911 + -0.2 631,911 + -0.1 631,911 + -0.2 631,912 - +0.6 631,912 - +0.5 631,912 - +0.2 631,912 - -2.0 631,912 - -0.1 631,912 - -0.7 631,912 - -0.4 631,912 - -0.1 631,915 + -1.5 631,915 + +0.6 631,915 + -0.4 631,915 + -0.7 631,974 + +0.1 631,975 - -0.1 632,038 + +0.1 632,038 + +0.9 632,039 - -0.2 632,044 - -1.2 632,044 - +0.2 632,044 - -0.1 632,106 + +0.9 632,106 + -0.8 632,106 + -1.1 632,106 + -1.4 632,106 + -0.2 632,107 - +0.6 632,107 - -0.5 632,107 - -0.5 632,107 - +0.3 632,107 - -0.9 632,226 + DDA3937_RS02865 0.26 +0.1 632,226 + DDA3937_RS02865 0.26 +1.9 632,226 + DDA3937_RS02865 0.26 -0.6 632,226 + DDA3937_RS02865 0.26 +0.5 632,226 + DDA3937_RS02865 0.26 -0.1 632,227 - DDA3937_RS02865 0.26 -0.8 632,301 + DDA3937_RS02865 0.38 +0.2 632,301 + DDA3937_RS02865 0.38 +0.2 632,301 + DDA3937_RS02865 0.38 +1.0 632,302 - DDA3937_RS02865 0.39 +1.5 632,302 - DDA3937_RS02865 0.39 +2.3 632,302 - DDA3937_RS02865 0.39 -0.4 632,435 - DDA3937_RS02865 0.61 +2.0 632,435 - DDA3937_RS02865 0.61 +1.2 632,580 - DDA3937_RS02865 0.86 +0.2 632,712 - -0.2 632,821 + DDA3937_RS02870 0.10 -0.3 632,821 + DDA3937_RS02870 0.10 +0.1 632,821 + DDA3937_RS02870 0.10 -0.5 632,822 - DDA3937_RS02870 0.10 +0.1 632,822 - DDA3937_RS02870 0.10 +1.9 632,822 - DDA3937_RS02870 0.10 -0.4 633,071 + DDA3937_RS02870 0.27 -0.1 633,071 + DDA3937_RS02870 0.27 +2.5 633,071 + DDA3937_RS02870 0.27 +0.1 633,072 - DDA3937_RS02870 0.27 -0.6 633,077 + DDA3937_RS02870 0.27 +0.1 633,078 - DDA3937_RS02870 0.27 +0.1 633,144 + DDA3937_RS02870 0.32 -0.7 633,144 + DDA3937_RS02870 0.32 -0.7 633,145 - DDA3937_RS02870 0.32 +1.1 633,145 - DDA3937_RS02870 0.32 +0.8 633,145 - DDA3937_RS02870 0.32 +1.5 633,228 + DDA3937_RS02870 0.37 -0.9 633,229 - DDA3937_RS02870 0.37 +0.2 633,340 - DDA3937_RS02870 0.45 -1.5 633,427 + DDA3937_RS02870 0.50 +1.0 633,427 + DDA3937_RS02870 0.50 -0.2 633,427 + DDA3937_RS02870 0.50 -0.7 633,427 + DDA3937_RS02870 0.50 +1.4 633,428 - DDA3937_RS02870 0.51 -0.3 633,428 - DDA3937_RS02870 0.51 -0.4 633,428 - DDA3937_RS02870 0.51 -0.1 633,428 - DDA3937_RS02870 0.51 +0.0 633,430 + DDA3937_RS02870 0.51 -1.0 633,479 + DDA3937_RS02870 0.54 +0.0 633,501 - DDA3937_RS02870 0.55 +0.6 633,501 - DDA3937_RS02870 0.55 +0.1 633,620 + DDA3937_RS02870 0.63 +0.9 633,620 + DDA3937_RS02870 0.63 -0.5 633,620 + DDA3937_RS02870 0.63 +0.0 633,620 + DDA3937_RS02870 0.63 -0.5 633,620 + DDA3937_RS02870 0.63 +0.9 633,620 + DDA3937_RS02870 0.63 -0.0 633,620 + DDA3937_RS02870 0.63 +0.2 633,621 - DDA3937_RS02870 0.63 -0.7 633,621 - DDA3937_RS02870 0.63 -0.6 633,621 - DDA3937_RS02870 0.63 +0.5 633,621 - DDA3937_RS02870 0.63 -0.1 633,621 - DDA3937_RS02870 0.63 +0.3 633,621 - DDA3937_RS02870 0.63 -0.7 633,621 - DDA3937_RS02870 0.63 -0.5 633,623 + DDA3937_RS02870 0.63 -1.1
Or see this region's nucleotide sequence