Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02705 and DDA3937_RS02710 overlap by 25 nucleotides DDA3937_RS02710 and DDA3937_RS02715 are separated by 114 nucleotides DDA3937_RS02715 and DDA3937_RS02720 are separated by 174 nucleotides
DDA3937_RS02705: DDA3937_RS02705 - protein-disulfide reductase DsbD, at 597,429 to 599,147
_RS02705
DDA3937_RS02710: DDA3937_RS02710 - divalent cation tolerance protein CutA, at 599,123 to 599,524
_RS02710
DDA3937_RS02715: DDA3937_RS02715 - anaerobic C4-dicarboxylate transporter, at 599,639 to 600,940
_RS02715
DDA3937_RS02720: DDA3937_RS02720 - aspartate ammonia-lyase, at 601,115 to 602,554
_RS02720
Position (kb) 599
600
601 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 598.652 kb on + strand, within DDA3937_RS02705 at 598.654 kb on + strand, within DDA3937_RS02705 at 598.654 kb on + strand, within DDA3937_RS02705 at 598.654 kb on + strand, within DDA3937_RS02705 at 598.654 kb on + strand, within DDA3937_RS02705 at 598.654 kb on + strand, within DDA3937_RS02705 at 598.777 kb on + strand, within DDA3937_RS02705 at 598.777 kb on + strand, within DDA3937_RS02705 at 598.777 kb on + strand, within DDA3937_RS02705 at 598.777 kb on + strand, within DDA3937_RS02705 at 598.777 kb on + strand, within DDA3937_RS02705 at 598.778 kb on - strand, within DDA3937_RS02705 at 598.778 kb on - strand, within DDA3937_RS02705 at 598.778 kb on - strand, within DDA3937_RS02705 at 598.778 kb on - strand, within DDA3937_RS02705 at 598.778 kb on - strand, within DDA3937_RS02705 at 598.846 kb on + strand, within DDA3937_RS02705 at 598.847 kb on - strand, within DDA3937_RS02705 at 598.847 kb on - strand, within DDA3937_RS02705 at 598.957 kb on + strand, within DDA3937_RS02705 at 598.957 kb on + strand at 598.957 kb on + strand, within DDA3937_RS02705 at 598.957 kb on + strand, within DDA3937_RS02705 at 598.957 kb on + strand, within DDA3937_RS02705 at 598.957 kb on + strand, within DDA3937_RS02705 at 598.957 kb on + strand, within DDA3937_RS02705 at 598.958 kb on - strand, within DDA3937_RS02705 at 598.958 kb on - strand, within DDA3937_RS02705 at 598.958 kb on - strand, within DDA3937_RS02705 at 598.960 kb on + strand, within DDA3937_RS02705 at 599.129 kb on + strand at 599.129 kb on + strand at 599.130 kb on - strand at 599.130 kb on - strand at 599.154 kb on + strand at 599.155 kb on - strand at 599.155 kb on - strand at 599.263 kb on + strand, within DDA3937_RS02710 at 599.263 kb on + strand, within DDA3937_RS02710 at 599.264 kb on - strand, within DDA3937_RS02710 at 599.299 kb on + strand, within DDA3937_RS02710 at 599.299 kb on + strand, within DDA3937_RS02710 at 599.299 kb on + strand at 599.299 kb on + strand, within DDA3937_RS02710 at 599.300 kb on - strand, within DDA3937_RS02710 at 599.314 kb on - strand, within DDA3937_RS02710 at 599.336 kb on + strand, within DDA3937_RS02710 at 599.337 kb on - strand, within DDA3937_RS02710 at 599.420 kb on + strand, within DDA3937_RS02710 at 599.420 kb on + strand, within DDA3937_RS02710 at 599.420 kb on + strand, within DDA3937_RS02710 at 599.421 kb on - strand, within DDA3937_RS02710 at 599.441 kb on + strand, within DDA3937_RS02710 at 599.441 kb on + strand, within DDA3937_RS02710 at 599.444 kb on + strand, within DDA3937_RS02710 at 599.444 kb on + strand, within DDA3937_RS02710 at 599.452 kb on + strand, within DDA3937_RS02710 at 599.453 kb on - strand, within DDA3937_RS02710 at 599.453 kb on - strand, within DDA3937_RS02710 at 599.459 kb on + strand, within DDA3937_RS02710 at 599.459 kb on + strand, within DDA3937_RS02710 at 599.460 kb on - strand, within DDA3937_RS02710 at 599.488 kb on + strand at 599.488 kb on + strand at 599.557 kb on + strand at 599.557 kb on + strand at 599.557 kb on + strand at 599.557 kb on + strand at 599.557 kb on + strand at 599.557 kb on + strand at 599.557 kb on + strand at 599.557 kb on + strand at 599.557 kb on + strand at 599.557 kb on + strand at 599.557 kb on + strand at 599.557 kb on + strand at 599.557 kb on + strand at 599.557 kb on + strand at 599.557 kb on + strand at 599.557 kb on + strand at 599.557 kb on + strand at 599.557 kb on + strand at 599.558 kb on - strand at 599.558 kb on - strand at 599.558 kb on - strand at 599.558 kb on - strand at 599.558 kb on - strand at 599.558 kb on - strand at 599.558 kb on - strand at 599.558 kb on - strand at 599.558 kb on - strand at 599.558 kb on - strand at 599.559 kb on + strand at 599.559 kb on + strand at 599.559 kb on + strand at 599.560 kb on - strand at 599.560 kb on - strand at 599.560 kb on - strand at 599.581 kb on + strand at 599.641 kb on - strand at 599.709 kb on - strand at 599.709 kb on - strand at 599.730 kb on + strand at 599.730 kb on + strand at 599.730 kb on + strand at 599.730 kb on + strand at 599.731 kb on - strand at 599.731 kb on - strand at 599.731 kb on - strand at 599.731 kb on - strand at 599.731 kb on - strand at 599.731 kb on - strand at 599.790 kb on + strand, within DDA3937_RS02715 at 599.790 kb on + strand, within DDA3937_RS02715 at 599.790 kb on + strand, within DDA3937_RS02715 at 599.791 kb on - strand, within DDA3937_RS02715 at 599.907 kb on + strand, within DDA3937_RS02715 at 599.907 kb on + strand, within DDA3937_RS02715 at 599.907 kb on + strand, within DDA3937_RS02715 at 599.966 kb on + strand, within DDA3937_RS02715 at 599.967 kb on - strand, within DDA3937_RS02715 at 600.016 kb on + strand, within DDA3937_RS02715 at 600.100 kb on + strand, within DDA3937_RS02715 at 600.223 kb on - strand, within DDA3937_RS02715 at 600.342 kb on + strand, within DDA3937_RS02715 at 600.342 kb on + strand, within DDA3937_RS02715 at 600.343 kb on - strand, within DDA3937_RS02715 at 600.415 kb on + strand, within DDA3937_RS02715 at 600.447 kb on + strand, within DDA3937_RS02715 at 600.447 kb on + strand, within DDA3937_RS02715 at 600.651 kb on + strand, within DDA3937_RS02715 at 600.651 kb on + strand, within DDA3937_RS02715 at 600.651 kb on + strand, within DDA3937_RS02715 at 600.651 kb on + strand, within DDA3937_RS02715 at 600.652 kb on - strand, within DDA3937_RS02715 at 600.681 kb on + strand at 600.681 kb on + strand, within DDA3937_RS02715 at 600.682 kb on - strand, within DDA3937_RS02715 at 600.726 kb on + strand, within DDA3937_RS02715 at 600.900 kb on + strand at 600.900 kb on + strand at 600.900 kb on + strand at 600.900 kb on + strand at 600.901 kb on - strand at 600.920 kb on - strand at 600.934 kb on + strand at 601.013 kb on - strand at 601.048 kb on + strand at 601.048 kb on + strand at 601.049 kb on - strand at 601.049 kb on - strand at 601.055 kb on + strand at 601.055 kb on + strand at 601.055 kb on + strand at 601.055 kb on + strand at 601.060 kb on + strand at 601.061 kb on - strand at 601.095 kb on + strand at 601.095 kb on + strand at 601.096 kb on - strand at 601.117 kb on - strand at 601.155 kb on + strand at 601.156 kb on - strand at 601.156 kb on - strand at 601.314 kb on + strand, within DDA3937_RS02720 at 601.314 kb on + strand, within DDA3937_RS02720 at 601.314 kb on + strand, within DDA3937_RS02720 at 601.314 kb on + strand, within DDA3937_RS02720 at 601.314 kb on + strand, within DDA3937_RS02720 at 601.314 kb on + strand, within DDA3937_RS02720 at 601.314 kb on + strand, within DDA3937_RS02720 at 601.314 kb on + strand, within DDA3937_RS02720 at 601.315 kb on - strand, within DDA3937_RS02720 at 601.315 kb on - strand, within DDA3937_RS02720 at 601.315 kb on - strand, within DDA3937_RS02720 at 601.315 kb on - strand, within DDA3937_RS02720 at 601.336 kb on + strand, within DDA3937_RS02720 at 601.336 kb on + strand, within DDA3937_RS02720 at 601.336 kb on + strand, within DDA3937_RS02720 at 601.336 kb on + strand, within DDA3937_RS02720 at 601.336 kb on + strand, within DDA3937_RS02720 at 601.337 kb on - strand, within DDA3937_RS02720 at 601.337 kb on - strand, within DDA3937_RS02720 at 601.337 kb on - strand, within DDA3937_RS02720 at 601.337 kb on - strand, within DDA3937_RS02720 at 601.337 kb on - strand, within DDA3937_RS02720 at 601.344 kb on + strand, within DDA3937_RS02720 at 601.344 kb on + strand, within DDA3937_RS02720 at 601.344 kb on + strand, within DDA3937_RS02720 at 601.344 kb on + strand, within DDA3937_RS02720 at 601.344 kb on + strand, within DDA3937_RS02720 at 601.344 kb on + strand, within DDA3937_RS02720 at 601.344 kb on + strand, within DDA3937_RS02720 at 601.344 kb on + strand, within DDA3937_RS02720 at 601.345 kb on - strand, within DDA3937_RS02720 at 601.345 kb on - strand, within DDA3937_RS02720 at 601.345 kb on - strand, within DDA3937_RS02720 at 601.345 kb on - strand, within DDA3937_RS02720 at 601.345 kb on - strand, within DDA3937_RS02720 at 601.345 kb on - strand, within DDA3937_RS02720 at 601.345 kb on - strand, within DDA3937_RS02720 at 601.404 kb on + strand, within DDA3937_RS02720 at 601.404 kb on + strand, within DDA3937_RS02720 at 601.405 kb on - strand, within DDA3937_RS02720 at 601.405 kb on - strand, within DDA3937_RS02720 at 601.405 kb on - strand, within DDA3937_RS02720 at 601.725 kb on + strand, within DDA3937_RS02720 at 601.726 kb on - strand, within DDA3937_RS02720 at 601.806 kb on - strand, within DDA3937_RS02720 at 601.822 kb on - strand, within DDA3937_RS02720 at 601.822 kb on - strand, within DDA3937_RS02720
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 598,652 + DDA3937_RS02705 0.71 -0.7 598,654 + DDA3937_RS02705 0.71 -0.7 598,654 + DDA3937_RS02705 0.71 -0.7 598,654 + DDA3937_RS02705 0.71 +0.9 598,654 + DDA3937_RS02705 0.71 +0.2 598,654 + DDA3937_RS02705 0.71 -0.1 598,777 + DDA3937_RS02705 0.78 -0.0 598,777 + DDA3937_RS02705 0.78 +0.2 598,777 + DDA3937_RS02705 0.78 +0.2 598,777 + DDA3937_RS02705 0.78 -3.1 598,777 + DDA3937_RS02705 0.78 -1.1 598,778 - DDA3937_RS02705 0.78 -1.4 598,778 - DDA3937_RS02705 0.78 -0.0 598,778 - DDA3937_RS02705 0.78 -1.9 598,778 - DDA3937_RS02705 0.78 -0.9 598,778 - DDA3937_RS02705 0.78 -0.2 598,846 + DDA3937_RS02705 0.82 -0.1 598,847 - DDA3937_RS02705 0.82 -0.1 598,847 - DDA3937_RS02705 0.82 -0.4 598,957 + DDA3937_RS02705 0.89 -0.3 598,957 + +1.5 598,957 + DDA3937_RS02705 0.89 +0.6 598,957 + DDA3937_RS02705 0.89 +0.7 598,957 + DDA3937_RS02705 0.89 +0.2 598,957 + DDA3937_RS02705 0.89 -1.9 598,957 + DDA3937_RS02705 0.89 -0.3 598,958 - DDA3937_RS02705 0.89 -2.1 598,958 - DDA3937_RS02705 0.89 +0.3 598,958 - DDA3937_RS02705 0.89 +0.9 598,960 + DDA3937_RS02705 0.89 +0.7 599,129 + -2.1 599,129 + -2.6 599,130 - +0.9 599,130 - -0.2 599,154 + -0.4 599,155 - +0.7 599,155 - -0.7 599,263 + DDA3937_RS02710 0.35 -1.2 599,263 + DDA3937_RS02710 0.35 +0.9 599,264 - DDA3937_RS02710 0.35 -0.2 599,299 + DDA3937_RS02710 0.44 -0.5 599,299 + DDA3937_RS02710 0.44 +0.6 599,299 + -0.1 599,299 + DDA3937_RS02710 0.44 -0.8 599,300 - DDA3937_RS02710 0.44 +1.4 599,314 - DDA3937_RS02710 0.48 +0.1 599,336 + DDA3937_RS02710 0.53 -0.5 599,337 - DDA3937_RS02710 0.53 -0.3 599,420 + DDA3937_RS02710 0.74 -1.4 599,420 + DDA3937_RS02710 0.74 -1.1 599,420 + DDA3937_RS02710 0.74 -1.1 599,421 - DDA3937_RS02710 0.74 -0.4 599,441 + DDA3937_RS02710 0.79 -0.9 599,441 + DDA3937_RS02710 0.79 -0.4 599,444 + DDA3937_RS02710 0.80 -0.3 599,444 + DDA3937_RS02710 0.80 -0.8 599,452 + DDA3937_RS02710 0.82 -0.6 599,453 - DDA3937_RS02710 0.82 -0.3 599,453 - DDA3937_RS02710 0.82 -0.2 599,459 + DDA3937_RS02710 0.84 -0.2 599,459 + DDA3937_RS02710 0.84 +0.3 599,460 - DDA3937_RS02710 0.84 +0.8 599,488 + -0.1 599,488 + -0.3 599,557 + +0.2 599,557 + -0.1 599,557 + -0.8 599,557 + -0.1 599,557 + -2.1 599,557 + -0.5 599,557 + -0.2 599,557 + -0.8 599,557 + -0.1 599,557 + -0.1 599,557 + -0.7 599,557 + +0.9 599,557 + -0.5 599,557 + -0.5 599,557 + -0.8 599,557 + -0.8 599,557 + +0.0 599,557 + +0.0 599,558 - -0.7 599,558 - +0.2 599,558 - -0.1 599,558 - -1.4 599,558 - -0.7 599,558 - +0.5 599,558 - +0.2 599,558 - -0.0 599,558 - -1.4 599,558 - -0.6 599,559 + +0.8 599,559 + +0.2 599,559 + -1.4 599,560 - -0.8 599,560 - +0.1 599,560 - -0.7 599,581 + -0.1 599,641 - -1.1 599,709 - +0.1 599,709 - -0.9 599,730 + +1.4 599,730 + -0.8 599,730 + +0.2 599,730 + +0.1 599,731 - +0.3 599,731 - -0.3 599,731 - -0.7 599,731 - -0.4 599,731 - -1.0 599,731 - +0.4 599,790 + DDA3937_RS02715 0.12 -1.2 599,790 + DDA3937_RS02715 0.12 -0.1 599,790 + DDA3937_RS02715 0.12 +0.3 599,791 - DDA3937_RS02715 0.12 +0.4 599,907 + DDA3937_RS02715 0.21 +0.3 599,907 + DDA3937_RS02715 0.21 -0.9 599,907 + DDA3937_RS02715 0.21 -0.1 599,966 + DDA3937_RS02715 0.25 -0.2 599,967 - DDA3937_RS02715 0.25 -0.7 600,016 + DDA3937_RS02715 0.29 +0.5 600,100 + DDA3937_RS02715 0.35 +0.7 600,223 - DDA3937_RS02715 0.45 -0.4 600,342 + DDA3937_RS02715 0.54 +0.2 600,342 + DDA3937_RS02715 0.54 +1.9 600,343 - DDA3937_RS02715 0.54 +0.2 600,415 + DDA3937_RS02715 0.60 -0.1 600,447 + DDA3937_RS02715 0.62 +0.1 600,447 + DDA3937_RS02715 0.62 +0.9 600,651 + DDA3937_RS02715 0.78 +0.9 600,651 + DDA3937_RS02715 0.78 +0.5 600,651 + DDA3937_RS02715 0.78 +0.1 600,651 + DDA3937_RS02715 0.78 -0.3 600,652 - DDA3937_RS02715 0.78 -0.3 600,681 + -0.1 600,681 + DDA3937_RS02715 0.80 -0.9 600,682 - DDA3937_RS02715 0.80 +0.6 600,726 + DDA3937_RS02715 0.83 +1.6 600,900 + +0.2 600,900 + -0.6 600,900 + +0.5 600,900 + -1.7 600,901 - -0.6 600,920 - +1.9 600,934 + -0.7 601,013 - -0.7 601,048 + -0.1 601,048 + +0.8 601,049 - +0.1 601,049 - +1.2 601,055 + -0.7 601,055 + +0.2 601,055 + +0.7 601,055 + +1.2 601,060 + -0.3 601,061 - -1.3 601,095 + +0.8 601,095 + +0.3 601,096 - -0.1 601,117 - +0.5 601,155 + +0.5 601,156 - +1.2 601,156 - +1.2 601,314 + DDA3937_RS02720 0.14 +0.8 601,314 + DDA3937_RS02720 0.14 +0.9 601,314 + DDA3937_RS02720 0.14 +0.6 601,314 + DDA3937_RS02720 0.14 +1.1 601,314 + DDA3937_RS02720 0.14 +1.3 601,314 + DDA3937_RS02720 0.14 +2.0 601,314 + DDA3937_RS02720 0.14 +1.0 601,314 + DDA3937_RS02720 0.14 +0.2 601,315 - DDA3937_RS02720 0.14 +0.5 601,315 - DDA3937_RS02720 0.14 +0.2 601,315 - DDA3937_RS02720 0.14 +0.7 601,315 - DDA3937_RS02720 0.14 +0.2 601,336 + DDA3937_RS02720 0.15 +1.0 601,336 + DDA3937_RS02720 0.15 +0.7 601,336 + DDA3937_RS02720 0.15 +1.3 601,336 + DDA3937_RS02720 0.15 -0.2 601,336 + DDA3937_RS02720 0.15 -0.2 601,337 - DDA3937_RS02720 0.15 +0.3 601,337 - DDA3937_RS02720 0.15 +2.1 601,337 - DDA3937_RS02720 0.15 +1.4 601,337 - DDA3937_RS02720 0.15 -0.3 601,337 - DDA3937_RS02720 0.15 +1.2 601,344 + DDA3937_RS02720 0.16 +0.9 601,344 + DDA3937_RS02720 0.16 +0.3 601,344 + DDA3937_RS02720 0.16 +0.5 601,344 + DDA3937_RS02720 0.16 +0.3 601,344 + DDA3937_RS02720 0.16 -0.0 601,344 + DDA3937_RS02720 0.16 +0.4 601,344 + DDA3937_RS02720 0.16 +1.1 601,344 + DDA3937_RS02720 0.16 +0.6 601,345 - DDA3937_RS02720 0.16 +0.5 601,345 - DDA3937_RS02720 0.16 +1.1 601,345 - DDA3937_RS02720 0.16 +0.3 601,345 - DDA3937_RS02720 0.16 +0.7 601,345 - DDA3937_RS02720 0.16 +1.6 601,345 - DDA3937_RS02720 0.16 +1.0 601,345 - DDA3937_RS02720 0.16 +1.1 601,404 + DDA3937_RS02720 0.20 +2.5 601,404 + DDA3937_RS02720 0.20 +0.2 601,405 - DDA3937_RS02720 0.20 +1.2 601,405 - DDA3937_RS02720 0.20 +0.7 601,405 - DDA3937_RS02720 0.20 +0.4 601,725 + DDA3937_RS02720 0.42 +0.4 601,726 - DDA3937_RS02720 0.42 +0.5 601,806 - DDA3937_RS02720 0.48 +0.8 601,822 - DDA3937_RS02720 0.49 +0.7 601,822 - DDA3937_RS02720 0.49 +0.7
Or see this region's nucleotide sequence