Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS02685

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS02680 and DDA3937_RS02685 are separated by 122 nucleotidesDDA3937_RS02685 and DDA3937_RS02690 are separated by 140 nucleotides DDA3937_RS02680: DDA3937_RS02680 - hypothetical protein, at 594,300 to 594,650 _RS02680 DDA3937_RS02685: DDA3937_RS02685 - hypothetical protein, at 594,773 to 594,961 _RS02685 DDA3937_RS02690: DDA3937_RS02690 - integrase arm-type DNA-binding domain-containing protein, at 595,102 to 596,361 _RS02690 Position (kb) 594 595Strain fitness (log2 ratio) -2 -1 0 1 2at 593.786 kb on + strandat 593.822 kb on + strandat 593.822 kb on + strandat 593.823 kb on - strandat 593.859 kb on - strandat 594.215 kb on - strandat 594.238 kb on + strandat 594.366 kb on + strand, within DDA3937_RS02680at 594.366 kb on + strand, within DDA3937_RS02680at 594.366 kb on + strand, within DDA3937_RS02680at 594.367 kb on - strand, within DDA3937_RS02680at 594.402 kb on + strand, within DDA3937_RS02680at 594.402 kb on + strand, within DDA3937_RS02680at 594.403 kb on - strand, within DDA3937_RS02680at 594.403 kb on - strand, within DDA3937_RS02680at 594.446 kb on + strand, within DDA3937_RS02680at 594.446 kb on + strand, within DDA3937_RS02680at 594.447 kb on - strand, within DDA3937_RS02680at 594.508 kb on + strand, within DDA3937_RS02680at 594.508 kb on + strand, within DDA3937_RS02680at 594.508 kb on + strand, within DDA3937_RS02680at 594.508 kb on + strand, within DDA3937_RS02680at 594.508 kb on + strand, within DDA3937_RS02680at 594.509 kb on - strand, within DDA3937_RS02680at 594.586 kb on + strand, within DDA3937_RS02680at 594.586 kb on + strand, within DDA3937_RS02680at 594.586 kb on + strandat 594.587 kb on - strand, within DDA3937_RS02680at 594.616 kb on + strandat 594.616 kb on + strandat 594.616 kb on + strandat 594.632 kb on + strandat 594.633 kb on - strandat 594.635 kb on + strandat 594.650 kb on + strandat 594.651 kb on - strandat 594.656 kb on + strandat 594.656 kb on + strandat 594.657 kb on - strandat 594.657 kb on - strandat 594.657 kb on - strandat 594.657 kb on - strandat 594.665 kb on + strandat 594.666 kb on - strandat 594.698 kb on + strandat 594.699 kb on - strandat 594.742 kb on - strandat 594.753 kb on - strandat 594.773 kb on - strandat 594.822 kb on - strand, within DDA3937_RS02685at 594.898 kb on + strand, within DDA3937_RS02685at 594.898 kb on + strand, within DDA3937_RS02685at 594.899 kb on - strand, within DDA3937_RS02685at 594.906 kb on + strand, within DDA3937_RS02685at 594.913 kb on + strand, within DDA3937_RS02685at 594.952 kb on + strandat 594.953 kb on - strandat 594.953 kb on - strandat 594.959 kb on + strandat 594.960 kb on - strandat 594.960 kb on - strandat 594.960 kb on - strandat 594.995 kb on - strandat 595.001 kb on + strandat 595.002 kb on - strandat 595.034 kb on + strandat 595.035 kb on - strandat 595.061 kb on - strandat 595.115 kb on + strandat 595.127 kb on + strandat 595.128 kb on - strandat 595.128 kb on - strandat 595.128 kb on - strandat 595.128 kb on - strandat 595.131 kb on + strandat 595.131 kb on + strandat 595.131 kb on + strandat 595.132 kb on - strandat 595.132 kb on - strandat 595.134 kb on - strandat 595.169 kb on + strandat 595.170 kb on - strandat 595.222 kb on - strandat 595.229 kb on + strand, within DDA3937_RS02690at 595.229 kb on + strand, within DDA3937_RS02690at 595.229 kb on + strand, within DDA3937_RS02690at 595.229 kb on + strand, within DDA3937_RS02690at 595.230 kb on - strand, within DDA3937_RS02690at 595.230 kb on - strand, within DDA3937_RS02690at 595.230 kb on - strand, within DDA3937_RS02690at 595.367 kb on + strand, within DDA3937_RS02690at 595.367 kb on + strand, within DDA3937_RS02690at 595.425 kb on + strand, within DDA3937_RS02690at 595.425 kb on + strand, within DDA3937_RS02690at 595.426 kb on - strand, within DDA3937_RS02690at 595.426 kb on - strand, within DDA3937_RS02690at 595.426 kb on - strand, within DDA3937_RS02690at 595.596 kb on + strand, within DDA3937_RS02690at 595.596 kb on + strand, within DDA3937_RS02690at 595.706 kb on + strand, within DDA3937_RS02690at 595.706 kb on + strand, within DDA3937_RS02690at 595.707 kb on - strand, within DDA3937_RS02690at 595.812 kb on + strand, within DDA3937_RS02690at 595.814 kb on + strand, within DDA3937_RS02690at 595.814 kb on + strand, within DDA3937_RS02690at 595.815 kb on - strand, within DDA3937_RS02690at 595.835 kb on - strand, within DDA3937_RS02690at 595.908 kb on + strand, within DDA3937_RS02690at 595.909 kb on - strandat 595.909 kb on - strand, within DDA3937_RS02690at 595.909 kb on - strand, within DDA3937_RS02690

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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593,786 + -1.0
593,822 + +0.9
593,822 + -0.0
593,823 - -0.3
593,859 - -0.4
594,215 - -0.6
594,238 + -1.1
594,366 + DDA3937_RS02680 0.19 -1.0
594,366 + DDA3937_RS02680 0.19 -0.1
594,366 + DDA3937_RS02680 0.19 -0.1
594,367 - DDA3937_RS02680 0.19 -0.7
594,402 + DDA3937_RS02680 0.29 -1.1
594,402 + DDA3937_RS02680 0.29 +0.5
594,403 - DDA3937_RS02680 0.29 -1.5
594,403 - DDA3937_RS02680 0.29 +0.7
594,446 + DDA3937_RS02680 0.42 -1.6
594,446 + DDA3937_RS02680 0.42 -1.0
594,447 - DDA3937_RS02680 0.42 +0.3
594,508 + DDA3937_RS02680 0.59 -0.3
594,508 + DDA3937_RS02680 0.59 +0.5
594,508 + DDA3937_RS02680 0.59 +1.0
594,508 + DDA3937_RS02680 0.59 -0.4
594,508 + DDA3937_RS02680 0.59 -1.0
594,509 - DDA3937_RS02680 0.60 -0.9
594,586 + DDA3937_RS02680 0.81 -0.0
594,586 + DDA3937_RS02680 0.81 -0.3
594,586 + -1.4
594,587 - DDA3937_RS02680 0.82 -0.9
594,616 + -0.2
594,616 + -0.7
594,616 + +0.9
594,632 + +1.9
594,633 - +0.3
594,635 + +0.4
594,650 + -0.7
594,651 - -0.1
594,656 + +1.6
594,656 + +1.0
594,657 - +1.3
594,657 - +0.6
594,657 - -1.4
594,657 - -0.4
594,665 + -0.1
594,666 - +1.4
594,698 + -1.9
594,699 - +0.3
594,742 - +0.1
594,753 - -1.1
594,773 - +0.9
594,822 - DDA3937_RS02685 0.26 -0.1
594,898 + DDA3937_RS02685 0.66 -1.4
594,898 + DDA3937_RS02685 0.66 -1.7
594,899 - DDA3937_RS02685 0.67 +0.2
594,906 + DDA3937_RS02685 0.70 -1.0
594,913 + DDA3937_RS02685 0.74 -0.7
594,952 + +2.0
594,953 - +0.3
594,953 - +1.4
594,959 + +1.6
594,960 - -0.2
594,960 - -0.4
594,960 - -0.8
594,995 - -0.2
595,001 + -0.7
595,002 - -0.4
595,034 + -0.2
595,035 - -0.4
595,061 - -0.4
595,115 + -0.1
595,127 + -0.2
595,128 - +0.2
595,128 - -0.8
595,128 - -0.6
595,128 - +0.9
595,131 + -0.3
595,131 + -0.1
595,131 + +0.3
595,132 - +0.2
595,132 - -0.2
595,134 - +0.1
595,169 + -0.7
595,170 - -0.3
595,222 - -0.0
595,229 + DDA3937_RS02690 0.10 +1.4
595,229 + DDA3937_RS02690 0.10 +0.0
595,229 + DDA3937_RS02690 0.10 -1.3
595,229 + DDA3937_RS02690 0.10 -0.4
595,230 - DDA3937_RS02690 0.10 -0.2
595,230 - DDA3937_RS02690 0.10 +0.9
595,230 - DDA3937_RS02690 0.10 -0.7
595,367 + DDA3937_RS02690 0.21 +0.6
595,367 + DDA3937_RS02690 0.21 -0.1
595,425 + DDA3937_RS02690 0.26 +0.5
595,425 + DDA3937_RS02690 0.26 -0.3
595,426 - DDA3937_RS02690 0.26 +0.2
595,426 - DDA3937_RS02690 0.26 -0.4
595,426 - DDA3937_RS02690 0.26 -0.4
595,596 + DDA3937_RS02690 0.39 -1.9
595,596 + DDA3937_RS02690 0.39 -0.7
595,706 + DDA3937_RS02690 0.48 -0.1
595,706 + DDA3937_RS02690 0.48 -0.4
595,707 - DDA3937_RS02690 0.48 +0.9
595,812 + DDA3937_RS02690 0.56 -0.2
595,814 + DDA3937_RS02690 0.57 +0.2
595,814 + DDA3937_RS02690 0.57 +0.3
595,815 - DDA3937_RS02690 0.57 +0.9
595,835 - DDA3937_RS02690 0.58 -0.1
595,908 + DDA3937_RS02690 0.64 +0.2
595,909 - +0.6
595,909 - DDA3937_RS02690 0.64 -0.8
595,909 - DDA3937_RS02690 0.64 -1.1

Or see this region's nucleotide sequence