Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02660 and DDA3937_RS02665 are separated by 164 nucleotides DDA3937_RS02665 and DDA3937_RS02670 are separated by 2 nucleotides DDA3937_RS02670 and DDA3937_RS02675 are separated by 58 nucleotides
DDA3937_RS02660: DDA3937_RS02660 - RNA-directed DNA polymerase, at 590,563 to 591,906
_RS02660
DDA3937_RS02665: DDA3937_RS02665 - type II toxin-antitoxin system toxin CcdB, at 592,071 to 592,376
_RS02665
DDA3937_RS02670: DDA3937_RS02670 - type II toxin-antitoxin system antitoxin CcdA, at 592,379 to 592,597
_RS02670
DDA3937_RS02675: DDA3937_RS02675 - hypothetical protein, at 592,656 to 593,399
_RS02675
Position (kb) 592
593 Strain fitness (log2 ratio) -2
-1
0
1
2 at 591.095 kb on + strand, within DDA3937_RS02660 at 591.099 kb on + strand, within DDA3937_RS02660 at 591.172 kb on - strand, within DDA3937_RS02660 at 591.172 kb on - strand, within DDA3937_RS02660 at 591.200 kb on - strand, within DDA3937_RS02660 at 591.350 kb on - strand, within DDA3937_RS02660 at 591.411 kb on + strand, within DDA3937_RS02660 at 591.621 kb on + strand, within DDA3937_RS02660 at 591.751 kb on - strand, within DDA3937_RS02660 at 591.929 kb on + strand at 591.935 kb on - strand at 591.962 kb on - strand at 591.962 kb on - strand at 592.005 kb on + strand at 592.005 kb on + strand at 592.040 kb on + strand at 592.041 kb on - strand at 592.140 kb on + strand, within DDA3937_RS02665 at 592.236 kb on - strand, within DDA3937_RS02665 at 592.557 kb on + strand, within DDA3937_RS02670 at 592.561 kb on + strand, within DDA3937_RS02670 at 592.562 kb on - strand at 592.620 kb on + strand at 592.629 kb on + strand at 592.632 kb on - strand at 592.633 kb on + strand at 592.634 kb on - strand at 592.658 kb on - strand at 592.697 kb on + strand at 592.697 kb on + strand at 592.697 kb on + strand at 592.698 kb on - strand at 592.698 kb on - strand at 592.698 kb on - strand at 592.699 kb on + strand at 592.700 kb on - strand at 592.763 kb on - strand, within DDA3937_RS02675 at 592.763 kb on - strand, within DDA3937_RS02675 at 592.763 kb on - strand, within DDA3937_RS02675 at 592.822 kb on + strand, within DDA3937_RS02675 at 592.822 kb on + strand, within DDA3937_RS02675 at 592.822 kb on + strand, within DDA3937_RS02675 at 592.822 kb on + strand, within DDA3937_RS02675 at 592.823 kb on - strand, within DDA3937_RS02675 at 592.823 kb on - strand, within DDA3937_RS02675 at 592.831 kb on + strand, within DDA3937_RS02675 at 592.831 kb on + strand, within DDA3937_RS02675 at 592.832 kb on - strand, within DDA3937_RS02675 at 592.832 kb on - strand, within DDA3937_RS02675 at 592.875 kb on - strand, within DDA3937_RS02675 at 593.064 kb on - strand, within DDA3937_RS02675 at 593.155 kb on - strand, within DDA3937_RS02675 at 593.250 kb on + strand, within DDA3937_RS02675 at 593.257 kb on + strand, within DDA3937_RS02675 at 593.258 kb on - strand, within DDA3937_RS02675 at 593.276 kb on + strand, within DDA3937_RS02675 at 593.276 kb on + strand, within DDA3937_RS02675 at 593.315 kb on - strand, within DDA3937_RS02675 at 593.315 kb on - strand, within DDA3937_RS02675 at 593.315 kb on - strand, within DDA3937_RS02675
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 591,095 + DDA3937_RS02660 0.40 -1.0 591,099 + DDA3937_RS02660 0.40 -0.4 591,172 - DDA3937_RS02660 0.45 -1.0 591,172 - DDA3937_RS02660 0.45 -0.4 591,200 - DDA3937_RS02660 0.47 -0.3 591,350 - DDA3937_RS02660 0.59 -0.5 591,411 + DDA3937_RS02660 0.63 -1.2 591,621 + DDA3937_RS02660 0.79 +0.9 591,751 - DDA3937_RS02660 0.88 -0.2 591,929 + -0.4 591,935 - +0.3 591,962 - -0.6 591,962 - +0.3 592,005 + -0.7 592,005 + -0.5 592,040 + +0.6 592,041 - +0.1 592,140 + DDA3937_RS02665 0.23 -0.8 592,236 - DDA3937_RS02665 0.54 -1.3 592,557 + DDA3937_RS02670 0.81 +0.9 592,561 + DDA3937_RS02670 0.83 -0.7 592,562 - -1.4 592,620 + -0.1 592,629 + -0.4 592,632 - -0.4 592,633 + -0.3 592,634 - +0.1 592,658 - -1.9 592,697 + +1.3 592,697 + -0.2 592,697 + -0.7 592,698 - +0.0 592,698 - -0.1 592,698 - -0.1 592,699 + +0.6 592,700 - -0.5 592,763 - DDA3937_RS02675 0.14 +0.0 592,763 - DDA3937_RS02675 0.14 +0.3 592,763 - DDA3937_RS02675 0.14 +0.3 592,822 + DDA3937_RS02675 0.22 -0.1 592,822 + DDA3937_RS02675 0.22 +0.2 592,822 + DDA3937_RS02675 0.22 -1.1 592,822 + DDA3937_RS02675 0.22 -0.0 592,823 - DDA3937_RS02675 0.22 +1.9 592,823 - DDA3937_RS02675 0.22 -0.1 592,831 + DDA3937_RS02675 0.24 -0.7 592,831 + DDA3937_RS02675 0.24 +0.5 592,832 - DDA3937_RS02675 0.24 +0.2 592,832 - DDA3937_RS02675 0.24 -0.9 592,875 - DDA3937_RS02675 0.29 -1.6 593,064 - DDA3937_RS02675 0.55 -0.7 593,155 - DDA3937_RS02675 0.67 +0.6 593,250 + DDA3937_RS02675 0.80 +0.5 593,257 + DDA3937_RS02675 0.81 -0.3 593,258 - DDA3937_RS02675 0.81 +0.5 593,276 + DDA3937_RS02675 0.83 +0.4 593,276 + DDA3937_RS02675 0.83 +1.1 593,315 - DDA3937_RS02675 0.89 -0.3 593,315 - DDA3937_RS02675 0.89 +0.8 593,315 - DDA3937_RS02675 0.89 +0.7
Or see this region's nucleotide sequence