Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02430 and DDA3937_RS02435 are separated by 14 nucleotides DDA3937_RS02435 and DDA3937_RS02440 are separated by 150 nucleotides DDA3937_RS02440 and DDA3937_RS02445 are separated by 430 nucleotides
DDA3937_RS02430: DDA3937_RS02430 - YtjB family periplasmic protein, at 538,220 to 538,900
_RS02430
DDA3937_RS02435: DDA3937_RS02435 - trans-aconitate 2-methyltransferase, at 538,915 to 539,691
_RS02435
DDA3937_RS02440: DDA3937_RS02440 - hypothetical protein, at 539,842 to 540,714
_RS02440
DDA3937_RS02445: DDA3937_RS02445 - peptide chain release factor 3, at 541,145 to 542,734
_RS02445
Position (kb) 539
540
541 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 539.013 kb on - strand, within DDA3937_RS02435 at 539.123 kb on + strand, within DDA3937_RS02435 at 539.123 kb on + strand, within DDA3937_RS02435 at 539.123 kb on + strand, within DDA3937_RS02435 at 539.123 kb on + strand, within DDA3937_RS02435 at 539.124 kb on - strand, within DDA3937_RS02435 at 539.124 kb on - strand, within DDA3937_RS02435 at 539.124 kb on - strand, within DDA3937_RS02435 at 539.126 kb on + strand, within DDA3937_RS02435 at 539.126 kb on + strand, within DDA3937_RS02435 at 539.126 kb on + strand, within DDA3937_RS02435 at 539.126 kb on + strand, within DDA3937_RS02435 at 539.126 kb on + strand, within DDA3937_RS02435 at 539.126 kb on + strand, within DDA3937_RS02435 at 539.126 kb on + strand, within DDA3937_RS02435 at 539.126 kb on + strand, within DDA3937_RS02435 at 539.126 kb on + strand, within DDA3937_RS02435 at 539.127 kb on - strand, within DDA3937_RS02435 at 539.127 kb on - strand, within DDA3937_RS02435 at 539.127 kb on - strand, within DDA3937_RS02435 at 539.127 kb on - strand, within DDA3937_RS02435 at 539.127 kb on - strand, within DDA3937_RS02435 at 539.127 kb on - strand, within DDA3937_RS02435 at 539.127 kb on - strand, within DDA3937_RS02435 at 539.142 kb on + strand, within DDA3937_RS02435 at 539.177 kb on + strand, within DDA3937_RS02435 at 539.177 kb on + strand, within DDA3937_RS02435 at 539.177 kb on + strand, within DDA3937_RS02435 at 539.178 kb on - strand, within DDA3937_RS02435 at 539.178 kb on - strand, within DDA3937_RS02435 at 539.180 kb on + strand, within DDA3937_RS02435 at 539.180 kb on + strand, within DDA3937_RS02435 at 539.180 kb on + strand, within DDA3937_RS02435 at 539.180 kb on + strand, within DDA3937_RS02435 at 539.180 kb on + strand, within DDA3937_RS02435 at 539.180 kb on + strand, within DDA3937_RS02435 at 539.181 kb on - strand, within DDA3937_RS02435 at 539.181 kb on - strand, within DDA3937_RS02435 at 539.349 kb on + strand, within DDA3937_RS02435 at 539.350 kb on - strand, within DDA3937_RS02435 at 539.350 kb on - strand, within DDA3937_RS02435 at 539.350 kb on - strand, within DDA3937_RS02435 at 539.350 kb on - strand, within DDA3937_RS02435 at 539.399 kb on + strand, within DDA3937_RS02435 at 539.399 kb on + strand, within DDA3937_RS02435 at 539.400 kb on - strand, within DDA3937_RS02435 at 539.613 kb on + strand, within DDA3937_RS02435 at 539.644 kb on - strand at 539.666 kb on + strand at 539.666 kb on + strand at 539.691 kb on + strand at 539.691 kb on + strand at 539.691 kb on + strand at 539.692 kb on - strand at 539.712 kb on - strand at 539.732 kb on + strand at 539.741 kb on + strand at 539.741 kb on + strand at 539.741 kb on + strand at 539.742 kb on - strand at 539.936 kb on + strand, within DDA3937_RS02440 at 539.936 kb on + strand, within DDA3937_RS02440 at 539.937 kb on - strand, within DDA3937_RS02440 at 539.949 kb on + strand, within DDA3937_RS02440 at 539.949 kb on + strand, within DDA3937_RS02440 at 539.950 kb on - strand, within DDA3937_RS02440 at 540.035 kb on + strand, within DDA3937_RS02440 at 540.035 kb on + strand at 540.043 kb on + strand, within DDA3937_RS02440 at 540.083 kb on - strand, within DDA3937_RS02440 at 540.161 kb on + strand, within DDA3937_RS02440 at 540.162 kb on - strand, within DDA3937_RS02440 at 540.162 kb on - strand, within DDA3937_RS02440 at 540.162 kb on - strand, within DDA3937_RS02440 at 540.194 kb on + strand, within DDA3937_RS02440 at 540.194 kb on + strand, within DDA3937_RS02440 at 540.195 kb on - strand, within DDA3937_RS02440 at 540.195 kb on - strand, within DDA3937_RS02440 at 540.209 kb on + strand, within DDA3937_RS02440 at 540.209 kb on + strand, within DDA3937_RS02440 at 540.209 kb on + strand, within DDA3937_RS02440 at 540.209 kb on + strand, within DDA3937_RS02440 at 540.209 kb on + strand, within DDA3937_RS02440 at 540.209 kb on + strand, within DDA3937_RS02440 at 540.209 kb on + strand, within DDA3937_RS02440 at 540.210 kb on - strand, within DDA3937_RS02440 at 540.210 kb on - strand, within DDA3937_RS02440 at 540.210 kb on - strand, within DDA3937_RS02440 at 540.210 kb on - strand, within DDA3937_RS02440 at 540.210 kb on - strand, within DDA3937_RS02440 at 540.210 kb on - strand, within DDA3937_RS02440 at 540.210 kb on - strand, within DDA3937_RS02440 at 540.210 kb on - strand, within DDA3937_RS02440 at 540.210 kb on - strand, within DDA3937_RS02440 at 540.270 kb on + strand, within DDA3937_RS02440 at 540.271 kb on - strand, within DDA3937_RS02440 at 540.296 kb on + strand, within DDA3937_RS02440 at 540.297 kb on - strand, within DDA3937_RS02440 at 540.364 kb on - strand, within DDA3937_RS02440 at 540.589 kb on + strand, within DDA3937_RS02440 at 540.590 kb on - strand, within DDA3937_RS02440 at 540.590 kb on - strand, within DDA3937_RS02440 at 540.590 kb on - strand, within DDA3937_RS02440 at 540.684 kb on + strand at 540.684 kb on + strand at 540.684 kb on + strand at 540.685 kb on - strand at 540.685 kb on - strand at 540.685 kb on - strand at 540.685 kb on - strand at 540.725 kb on + strand at 540.725 kb on + strand at 540.729 kb on + strand at 540.729 kb on + strand at 540.729 kb on + strand at 540.730 kb on - strand at 540.730 kb on - strand at 540.730 kb on - strand at 540.730 kb on - strand at 540.730 kb on - strand at 540.730 kb on - strand at 540.730 kb on - strand at 540.730 kb on - strand at 540.730 kb on - strand at 540.730 kb on - strand at 540.734 kb on + strand at 540.734 kb on + strand at 540.754 kb on - strand at 540.797 kb on + strand at 540.798 kb on - strand at 540.844 kb on - strand at 540.844 kb on - strand at 540.870 kb on + strand at 540.870 kb on + strand at 540.871 kb on - strand at 540.871 kb on - strand at 540.876 kb on - strand at 540.921 kb on + strand at 540.921 kb on + strand at 540.921 kb on + strand at 540.921 kb on + strand at 540.921 kb on + strand at 540.921 kb on + strand at 540.921 kb on + strand at 540.921 kb on + strand at 540.922 kb on - strand at 540.922 kb on - strand at 540.922 kb on - strand at 540.925 kb on + strand at 540.925 kb on + strand at 540.925 kb on + strand at 540.925 kb on + strand at 540.925 kb on + strand at 540.925 kb on + strand at 540.926 kb on - strand at 540.926 kb on - strand at 540.926 kb on - strand at 540.941 kb on + strand at 540.941 kb on + strand at 540.941 kb on + strand at 540.941 kb on + strand at 540.941 kb on + strand at 540.941 kb on + strand at 540.941 kb on + strand at 540.941 kb on + strand at 540.942 kb on - strand at 540.942 kb on - strand at 540.942 kb on - strand at 540.942 kb on - strand at 540.954 kb on + strand at 540.954 kb on + strand at 540.954 kb on + strand at 540.954 kb on + strand at 540.955 kb on - strand at 540.955 kb on - strand at 540.955 kb on - strand at 540.980 kb on + strand at 540.990 kb on + strand at 540.990 kb on + strand at 541.021 kb on + strand at 541.041 kb on + strand at 541.042 kb on - strand at 541.055 kb on + strand at 541.120 kb on + strand at 541.120 kb on + strand at 541.120 kb on + strand at 541.120 kb on + strand at 541.124 kb on + strand at 541.124 kb on + strand at 541.124 kb on + strand at 541.124 kb on + strand at 541.127 kb on + strand at 541.199 kb on - strand at 541.443 kb on - strand, within DDA3937_RS02445 at 541.700 kb on + strand, within DDA3937_RS02445
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 539,013 - DDA3937_RS02435 0.13 -0.7 539,123 + DDA3937_RS02435 0.27 +1.9 539,123 + DDA3937_RS02435 0.27 +0.1 539,123 + DDA3937_RS02435 0.27 -0.6 539,123 + DDA3937_RS02435 0.27 +0.5 539,124 - DDA3937_RS02435 0.27 -0.4 539,124 - DDA3937_RS02435 0.27 -0.7 539,124 - DDA3937_RS02435 0.27 +0.5 539,126 + DDA3937_RS02435 0.27 -1.1 539,126 + DDA3937_RS02435 0.27 +0.1 539,126 + DDA3937_RS02435 0.27 -0.7 539,126 + DDA3937_RS02435 0.27 +0.2 539,126 + DDA3937_RS02435 0.27 -2.8 539,126 + DDA3937_RS02435 0.27 +0.1 539,126 + DDA3937_RS02435 0.27 +0.3 539,126 + DDA3937_RS02435 0.27 -0.4 539,126 + DDA3937_RS02435 0.27 -0.9 539,127 - DDA3937_RS02435 0.27 -1.7 539,127 - DDA3937_RS02435 0.27 +0.1 539,127 - DDA3937_RS02435 0.27 -1.2 539,127 - DDA3937_RS02435 0.27 +0.0 539,127 - DDA3937_RS02435 0.27 -0.3 539,127 - DDA3937_RS02435 0.27 +0.2 539,127 - DDA3937_RS02435 0.27 -0.5 539,142 + DDA3937_RS02435 0.29 -0.8 539,177 + DDA3937_RS02435 0.34 -1.4 539,177 + DDA3937_RS02435 0.34 -0.7 539,177 + DDA3937_RS02435 0.34 -0.1 539,178 - DDA3937_RS02435 0.34 -1.2 539,178 - DDA3937_RS02435 0.34 -0.2 539,180 + DDA3937_RS02435 0.34 -0.1 539,180 + DDA3937_RS02435 0.34 +0.1 539,180 + DDA3937_RS02435 0.34 -0.1 539,180 + DDA3937_RS02435 0.34 +0.2 539,180 + DDA3937_RS02435 0.34 +1.2 539,180 + DDA3937_RS02435 0.34 +0.3 539,181 - DDA3937_RS02435 0.34 -0.1 539,181 - DDA3937_RS02435 0.34 +0.9 539,349 + DDA3937_RS02435 0.56 +0.5 539,350 - DDA3937_RS02435 0.56 +0.4 539,350 - DDA3937_RS02435 0.56 -0.4 539,350 - DDA3937_RS02435 0.56 +0.1 539,350 - DDA3937_RS02435 0.56 +0.1 539,399 + DDA3937_RS02435 0.62 -0.3 539,399 + DDA3937_RS02435 0.62 -0.2 539,400 - DDA3937_RS02435 0.62 +0.5 539,613 + DDA3937_RS02435 0.90 -0.3 539,644 - +0.2 539,666 + -1.1 539,666 + -0.1 539,691 + +0.2 539,691 + -1.5 539,691 + -0.2 539,692 - -0.4 539,712 - +0.3 539,732 + -0.4 539,741 + -0.1 539,741 + -0.7 539,741 + -0.5 539,742 - +0.2 539,936 + DDA3937_RS02440 0.11 +0.7 539,936 + DDA3937_RS02440 0.11 +0.2 539,937 - DDA3937_RS02440 0.11 -0.1 539,949 + DDA3937_RS02440 0.12 -2.1 539,949 + DDA3937_RS02440 0.12 -0.2 539,950 - DDA3937_RS02440 0.12 -1.1 540,035 + DDA3937_RS02440 0.22 +0.4 540,035 + +1.9 540,043 + DDA3937_RS02440 0.23 +1.2 540,083 - DDA3937_RS02440 0.28 -0.2 540,161 + DDA3937_RS02440 0.37 -0.7 540,162 - DDA3937_RS02440 0.37 -0.1 540,162 - DDA3937_RS02440 0.37 +0.5 540,162 - DDA3937_RS02440 0.37 +0.1 540,194 + DDA3937_RS02440 0.40 +1.1 540,194 + DDA3937_RS02440 0.40 +1.1 540,195 - DDA3937_RS02440 0.40 +0.9 540,195 - DDA3937_RS02440 0.40 +0.4 540,209 + DDA3937_RS02440 0.42 -0.7 540,209 + DDA3937_RS02440 0.42 +0.7 540,209 + DDA3937_RS02440 0.42 -0.5 540,209 + DDA3937_RS02440 0.42 +0.9 540,209 + DDA3937_RS02440 0.42 -0.7 540,209 + DDA3937_RS02440 0.42 -0.3 540,209 + DDA3937_RS02440 0.42 -0.2 540,210 - DDA3937_RS02440 0.42 -2.4 540,210 - DDA3937_RS02440 0.42 +0.5 540,210 - DDA3937_RS02440 0.42 +0.1 540,210 - DDA3937_RS02440 0.42 +0.6 540,210 - DDA3937_RS02440 0.42 -0.7 540,210 - DDA3937_RS02440 0.42 +1.3 540,210 - DDA3937_RS02440 0.42 -2.4 540,210 - DDA3937_RS02440 0.42 +0.7 540,210 - DDA3937_RS02440 0.42 -0.0 540,270 + DDA3937_RS02440 0.49 -0.7 540,271 - DDA3937_RS02440 0.49 -0.2 540,296 + DDA3937_RS02440 0.52 -0.3 540,297 - DDA3937_RS02440 0.52 -0.4 540,364 - DDA3937_RS02440 0.60 +0.2 540,589 + DDA3937_RS02440 0.86 +1.8 540,590 - DDA3937_RS02440 0.86 -0.3 540,590 - DDA3937_RS02440 0.86 -1.1 540,590 - DDA3937_RS02440 0.86 -1.7 540,684 + -0.2 540,684 + -0.9 540,684 + -0.1 540,685 - -0.2 540,685 - -1.3 540,685 - -0.2 540,685 - +0.9 540,725 + -0.7 540,725 + -0.5 540,729 + +0.4 540,729 + -0.0 540,729 + +0.3 540,730 - +1.2 540,730 - -0.7 540,730 - +0.7 540,730 - +0.6 540,730 - -0.9 540,730 - -1.4 540,730 - +0.2 540,730 - -0.1 540,730 - -0.1 540,730 - -1.5 540,734 + +0.2 540,734 + -0.2 540,754 - -0.8 540,797 + -1.0 540,798 - -0.3 540,844 - -0.2 540,844 - -0.4 540,870 + +0.7 540,870 + +0.1 540,871 - -0.7 540,871 - -1.2 540,876 - -0.4 540,921 + +0.1 540,921 + -0.5 540,921 + -0.3 540,921 + -1.1 540,921 + +1.0 540,921 + +1.3 540,921 + -1.1 540,921 + -0.6 540,922 - -0.4 540,922 - -0.7 540,922 - +1.5 540,925 + -0.7 540,925 + +0.9 540,925 + -1.2 540,925 + -0.4 540,925 + -0.2 540,925 + +1.2 540,926 - -1.7 540,926 - +0.0 540,926 - -1.1 540,941 + +0.9 540,941 + -0.3 540,941 + +0.0 540,941 + +0.4 540,941 + -0.1 540,941 + -0.2 540,941 + +1.4 540,941 + -0.1 540,942 - -0.1 540,942 - +0.2 540,942 - -0.4 540,942 - -0.3 540,954 + -0.5 540,954 + +1.2 540,954 + +0.3 540,954 + -0.2 540,955 - -0.3 540,955 - -1.7 540,955 - -1.0 540,980 + +0.1 540,990 + +0.1 540,990 + -0.1 541,021 + -0.1 541,041 + -1.2 541,042 - +0.5 541,055 + -0.7 541,120 + -1.9 541,120 + -0.1 541,120 + -0.7 541,120 + -0.4 541,124 + +0.4 541,124 + -0.0 541,124 + +0.2 541,124 + -0.7 541,127 + +0.5 541,199 - +0.5 541,443 - DDA3937_RS02445 0.19 -1.2 541,700 + DDA3937_RS02445 0.35 +0.0
Or see this region's nucleotide sequence