Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02400 and DDA3937_RS02405 are separated by 332 nucleotides DDA3937_RS02405 and DDA3937_RS02410 are separated by 319 nucleotides DDA3937_RS02410 and DDA3937_RS02415 are separated by 13 nucleotides
DDA3937_RS02400: DDA3937_RS02400 - YecA family protein, at 532,127 to 532,711
_RS02400
DDA3937_RS02405: DDA3937_RS02405 - cell division protein ZapA, at 533,044 to 533,373
_RS02405
DDA3937_RS02410: DDA3937_RS02410 - 5-formyltetrahydrofolate cyclo-ligase, at 533,693 to 534,307
_RS02410
DDA3937_RS02415: DDA3937_RS02415 - multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR, at 534,321 to 535,577
_RS02415
Position (kb) 533
534
535 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 532.697 kb on - strand at 532.697 kb on - strand at 532.697 kb on - strand at 532.697 kb on - strand at 532.697 kb on - strand at 532.746 kb on - strand at 532.746 kb on - strand at 532.751 kb on - strand at 532.751 kb on - strand at 532.770 kb on - strand at 532.770 kb on - strand at 532.770 kb on - strand at 532.772 kb on - strand at 532.772 kb on - strand at 532.772 kb on - strand at 532.797 kb on + strand at 532.797 kb on + strand at 532.798 kb on - strand at 532.798 kb on - strand at 532.804 kb on + strand at 532.804 kb on + strand at 532.853 kb on + strand at 532.853 kb on + strand at 532.853 kb on + strand at 532.853 kb on + strand at 532.853 kb on + strand at 532.853 kb on + strand at 532.853 kb on + strand at 532.853 kb on + strand at 532.853 kb on + strand at 532.853 kb on + strand at 532.854 kb on - strand at 532.854 kb on - strand at 532.854 kb on - strand at 532.854 kb on - strand at 532.854 kb on - strand at 532.854 kb on - strand at 532.862 kb on - strand at 532.862 kb on - strand at 532.862 kb on - strand at 532.862 kb on - strand at 532.909 kb on + strand at 532.909 kb on + strand at 532.909 kb on + strand at 532.919 kb on - strand at 532.920 kb on + strand at 532.920 kb on + strand at 532.921 kb on - strand at 532.921 kb on - strand at 532.931 kb on + strand at 532.931 kb on + strand at 532.931 kb on + strand at 532.932 kb on - strand at 532.949 kb on + strand at 532.949 kb on + strand at 532.949 kb on + strand at 532.949 kb on + strand at 532.949 kb on + strand at 532.949 kb on + strand at 532.949 kb on + strand at 532.950 kb on - strand at 532.950 kb on - strand at 532.950 kb on - strand at 532.951 kb on + strand at 532.951 kb on + strand at 532.951 kb on + strand at 532.951 kb on + strand at 532.951 kb on + strand at 532.951 kb on + strand at 532.951 kb on + strand at 532.953 kb on + strand at 532.953 kb on + strand at 533.341 kb on - strand at 533.396 kb on - strand at 533.433 kb on + strand at 533.433 kb on + strand at 533.433 kb on + strand at 533.433 kb on + strand at 533.433 kb on + strand at 533.433 kb on + strand at 533.433 kb on + strand at 533.434 kb on - strand at 533.528 kb on + strand at 533.529 kb on - strand at 533.609 kb on + strand at 533.645 kb on + strand at 533.645 kb on + strand at 533.646 kb on - strand at 533.650 kb on - strand at 533.674 kb on + strand at 533.674 kb on + strand at 533.674 kb on + strand at 533.675 kb on - strand at 533.675 kb on - strand at 533.675 kb on - strand at 533.739 kb on + strand at 533.804 kb on - strand, within DDA3937_RS02410 at 533.948 kb on + strand, within DDA3937_RS02410 at 533.948 kb on + strand, within DDA3937_RS02410 at 533.948 kb on + strand, within DDA3937_RS02410 at 533.949 kb on - strand, within DDA3937_RS02410 at 533.949 kb on - strand, within DDA3937_RS02410 at 534.158 kb on + strand, within DDA3937_RS02410 at 534.246 kb on + strand at 534.277 kb on + strand at 534.277 kb on + strand at 534.277 kb on + strand at 534.323 kb on - strand at 534.406 kb on + strand at 534.431 kb on - strand at 534.431 kb on - strand at 534.440 kb on + strand at 534.440 kb on + strand at 534.440 kb on + strand at 534.441 kb on - strand at 534.455 kb on + strand, within DDA3937_RS02415 at 534.456 kb on - strand, within DDA3937_RS02415 at 534.456 kb on - strand, within DDA3937_RS02415 at 534.456 kb on - strand, within DDA3937_RS02415 at 534.568 kb on + strand, within DDA3937_RS02415 at 534.614 kb on - strand, within DDA3937_RS02415 at 534.614 kb on - strand, within DDA3937_RS02415 at 534.676 kb on + strand, within DDA3937_RS02415 at 534.677 kb on - strand, within DDA3937_RS02415 at 534.697 kb on + strand, within DDA3937_RS02415 at 534.698 kb on - strand, within DDA3937_RS02415 at 534.779 kb on - strand, within DDA3937_RS02415 at 534.779 kb on - strand, within DDA3937_RS02415 at 534.779 kb on - strand, within DDA3937_RS02415 at 534.914 kb on + strand at 534.914 kb on + strand, within DDA3937_RS02415 at 534.915 kb on - strand, within DDA3937_RS02415 at 534.915 kb on - strand, within DDA3937_RS02415 at 534.916 kb on + strand, within DDA3937_RS02415 at 534.916 kb on + strand, within DDA3937_RS02415 at 534.916 kb on + strand, within DDA3937_RS02415 at 534.916 kb on + strand, within DDA3937_RS02415 at 534.916 kb on + strand, within DDA3937_RS02415 at 534.917 kb on - strand, within DDA3937_RS02415 at 534.917 kb on - strand, within DDA3937_RS02415 at 534.917 kb on - strand, within DDA3937_RS02415 at 534.917 kb on - strand, within DDA3937_RS02415 at 534.917 kb on - strand, within DDA3937_RS02415 at 534.917 kb on - strand, within DDA3937_RS02415 at 534.917 kb on - strand, within DDA3937_RS02415 at 535.022 kb on - strand, within DDA3937_RS02415 at 535.051 kb on + strand, within DDA3937_RS02415 at 535.051 kb on + strand, within DDA3937_RS02415 at 535.085 kb on + strand, within DDA3937_RS02415 at 535.085 kb on + strand, within DDA3937_RS02415 at 535.085 kb on + strand, within DDA3937_RS02415 at 535.086 kb on - strand, within DDA3937_RS02415 at 535.086 kb on - strand, within DDA3937_RS02415 at 535.296 kb on + strand, within DDA3937_RS02415 at 535.296 kb on + strand, within DDA3937_RS02415 at 535.297 kb on - strand, within DDA3937_RS02415 at 535.297 kb on - strand, within DDA3937_RS02415 at 535.297 kb on - strand, within DDA3937_RS02415 at 535.297 kb on - strand, within DDA3937_RS02415 at 535.297 kb on - strand, within DDA3937_RS02415 at 535.297 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 532,697 - -0.4 532,697 - -0.3 532,697 - -0.7 532,697 - -1.9 532,697 - -0.2 532,746 - -1.3 532,746 - -1.7 532,751 - +0.9 532,751 - -1.9 532,770 - +0.2 532,770 - -2.4 532,770 - -1.0 532,772 - -2.3 532,772 - -1.8 532,772 - -1.2 532,797 + -0.4 532,797 + -0.3 532,798 - -0.3 532,798 - -1.5 532,804 + -1.0 532,804 + -0.5 532,853 + -0.4 532,853 + -0.4 532,853 + -1.0 532,853 + +0.1 532,853 + -0.7 532,853 + +1.4 532,853 + +0.7 532,853 + +0.3 532,853 + -0.3 532,853 + -0.2 532,854 - -1.1 532,854 - -2.1 532,854 - -1.0 532,854 - -0.8 532,854 - -2.5 532,854 - -0.1 532,862 - -1.5 532,862 - -0.3 532,862 - -1.7 532,862 - -0.1 532,909 + -0.5 532,909 + +0.6 532,909 + +1.5 532,919 - -0.8 532,920 + +0.6 532,920 + -0.3 532,921 - -0.8 532,921 - -1.2 532,931 + -0.3 532,931 + -1.8 532,931 + +1.3 532,932 - +0.9 532,949 + +0.1 532,949 + -0.4 532,949 + -1.7 532,949 + -2.2 532,949 + +0.9 532,949 + -1.4 532,949 + +0.7 532,950 - -2.4 532,950 - -3.0 532,950 - -2.2 532,951 + -3.0 532,951 + -1.1 532,951 + -0.6 532,951 + -1.7 532,951 + -1.4 532,951 + -1.9 532,951 + +0.4 532,953 + -0.1 532,953 + -0.1 533,341 - +0.9 533,396 - +0.1 533,433 + +0.1 533,433 + +1.4 533,433 + +0.5 533,433 + +0.1 533,433 + -1.5 533,433 + +0.7 533,433 + +0.3 533,434 - -0.1 533,528 + +0.8 533,529 - +0.7 533,609 + +0.4 533,645 + -0.1 533,645 + -0.3 533,646 - -0.2 533,650 - -2.1 533,674 + +1.5 533,674 + -2.7 533,674 + -0.7 533,675 - -0.1 533,675 - -1.1 533,675 - -1.0 533,739 + +0.1 533,804 - DDA3937_RS02410 0.18 -1.4 533,948 + DDA3937_RS02410 0.41 -0.7 533,948 + DDA3937_RS02410 0.41 -2.9 533,948 + DDA3937_RS02410 0.41 -1.1 533,949 - DDA3937_RS02410 0.42 +0.1 533,949 - DDA3937_RS02410 0.42 -1.4 534,158 + DDA3937_RS02410 0.76 -1.5 534,246 + -1.9 534,277 + +1.0 534,277 + -0.2 534,277 + -0.5 534,323 - +1.0 534,406 + +0.9 534,431 - +0.7 534,431 - +0.3 534,440 + +0.2 534,440 + -1.1 534,440 + +0.1 534,441 - -0.4 534,455 + DDA3937_RS02415 0.11 -0.7 534,456 - DDA3937_RS02415 0.11 +0.0 534,456 - DDA3937_RS02415 0.11 +0.9 534,456 - DDA3937_RS02415 0.11 -0.1 534,568 + DDA3937_RS02415 0.20 +0.6 534,614 - DDA3937_RS02415 0.23 +0.7 534,614 - DDA3937_RS02415 0.23 +1.3 534,676 + DDA3937_RS02415 0.28 +0.9 534,677 - DDA3937_RS02415 0.28 -0.7 534,697 + DDA3937_RS02415 0.30 +0.7 534,698 - DDA3937_RS02415 0.30 +0.0 534,779 - DDA3937_RS02415 0.36 +0.1 534,779 - DDA3937_RS02415 0.36 -0.9 534,779 - DDA3937_RS02415 0.36 +0.1 534,914 + +0.9 534,914 + DDA3937_RS02415 0.47 -0.1 534,915 - DDA3937_RS02415 0.47 -0.7 534,915 - DDA3937_RS02415 0.47 +1.1 534,916 + DDA3937_RS02415 0.47 +1.3 534,916 + DDA3937_RS02415 0.47 +1.5 534,916 + DDA3937_RS02415 0.47 -0.2 534,916 + DDA3937_RS02415 0.47 +0.6 534,916 + DDA3937_RS02415 0.47 -0.1 534,917 - DDA3937_RS02415 0.47 +0.1 534,917 - DDA3937_RS02415 0.47 -1.9 534,917 - DDA3937_RS02415 0.47 +0.3 534,917 - DDA3937_RS02415 0.47 -1.7 534,917 - DDA3937_RS02415 0.47 -0.2 534,917 - DDA3937_RS02415 0.47 +0.4 534,917 - DDA3937_RS02415 0.47 +0.2 535,022 - DDA3937_RS02415 0.56 -0.1 535,051 + DDA3937_RS02415 0.58 -0.0 535,051 + DDA3937_RS02415 0.58 -0.9 535,085 + DDA3937_RS02415 0.61 -1.4 535,085 + DDA3937_RS02415 0.61 -0.2 535,085 + DDA3937_RS02415 0.61 +0.6 535,086 - DDA3937_RS02415 0.61 +0.6 535,086 - DDA3937_RS02415 0.61 -1.1 535,296 + DDA3937_RS02415 0.78 +0.1 535,296 + DDA3937_RS02415 0.78 +0.2 535,297 - DDA3937_RS02415 0.78 +0.2 535,297 - DDA3937_RS02415 0.78 +0.4 535,297 - DDA3937_RS02415 0.78 -1.3 535,297 - DDA3937_RS02415 0.78 +0.7 535,297 - DDA3937_RS02415 0.78 -0.2 535,297 - -0.1
Or see this region's nucleotide sequence