Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02395 and DDA3937_RS02400 are separated by 38 nucleotides DDA3937_RS02400 and DDA3937_RS02405 are separated by 332 nucleotides DDA3937_RS02405 and DDA3937_RS02410 are separated by 319 nucleotides
DDA3937_RS02395: DDA3937_RS02395 - Xaa-Pro aminopeptidase, at 530,760 to 532,088
_RS02395
DDA3937_RS02400: DDA3937_RS02400 - YecA family protein, at 532,127 to 532,711
_RS02400
DDA3937_RS02405: DDA3937_RS02405 - cell division protein ZapA, at 533,044 to 533,373
_RS02405
DDA3937_RS02410: DDA3937_RS02410 - 5-formyltetrahydrofolate cyclo-ligase, at 533,693 to 534,307
_RS02410
Position (kb) 532
533 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 531.407 kb on - strand, within DDA3937_RS02395 at 531.990 kb on - strand at 532.129 kb on - strand at 532.129 kb on - strand at 532.211 kb on + strand, within DDA3937_RS02400 at 532.211 kb on + strand, within DDA3937_RS02400 at 532.212 kb on - strand, within DDA3937_RS02400 at 532.212 kb on - strand, within DDA3937_RS02400 at 532.212 kb on - strand, within DDA3937_RS02400 at 532.212 kb on - strand, within DDA3937_RS02400 at 532.212 kb on - strand, within DDA3937_RS02400 at 532.212 kb on - strand, within DDA3937_RS02400 at 532.212 kb on - strand, within DDA3937_RS02400 at 532.212 kb on - strand, within DDA3937_RS02400 at 532.215 kb on + strand, within DDA3937_RS02400 at 532.215 kb on + strand, within DDA3937_RS02400 at 532.216 kb on - strand, within DDA3937_RS02400 at 532.216 kb on - strand, within DDA3937_RS02400 at 532.273 kb on - strand, within DDA3937_RS02400 at 532.412 kb on + strand, within DDA3937_RS02400 at 532.412 kb on + strand, within DDA3937_RS02400 at 532.413 kb on - strand, within DDA3937_RS02400 at 532.413 kb on - strand, within DDA3937_RS02400 at 532.498 kb on - strand, within DDA3937_RS02400 at 532.498 kb on - strand, within DDA3937_RS02400 at 532.665 kb on - strand at 532.665 kb on - strand at 532.697 kb on - strand at 532.697 kb on - strand at 532.697 kb on - strand at 532.697 kb on - strand at 532.697 kb on - strand at 532.746 kb on - strand at 532.746 kb on - strand at 532.751 kb on - strand at 532.751 kb on - strand at 532.770 kb on - strand at 532.770 kb on - strand at 532.770 kb on - strand at 532.772 kb on - strand at 532.772 kb on - strand at 532.772 kb on - strand at 532.797 kb on + strand at 532.797 kb on + strand at 532.798 kb on - strand at 532.798 kb on - strand at 532.804 kb on + strand at 532.804 kb on + strand at 532.853 kb on + strand at 532.853 kb on + strand at 532.853 kb on + strand at 532.853 kb on + strand at 532.853 kb on + strand at 532.853 kb on + strand at 532.853 kb on + strand at 532.853 kb on + strand at 532.853 kb on + strand at 532.853 kb on + strand at 532.854 kb on - strand at 532.854 kb on - strand at 532.854 kb on - strand at 532.854 kb on - strand at 532.854 kb on - strand at 532.854 kb on - strand at 532.862 kb on - strand at 532.862 kb on - strand at 532.862 kb on - strand at 532.862 kb on - strand at 532.909 kb on + strand at 532.909 kb on + strand at 532.909 kb on + strand at 532.919 kb on - strand at 532.920 kb on + strand at 532.920 kb on + strand at 532.921 kb on - strand at 532.921 kb on - strand at 532.931 kb on + strand at 532.931 kb on + strand at 532.931 kb on + strand at 532.932 kb on - strand at 532.949 kb on + strand at 532.949 kb on + strand at 532.949 kb on + strand at 532.949 kb on + strand at 532.949 kb on + strand at 532.949 kb on + strand at 532.949 kb on + strand at 532.950 kb on - strand at 532.950 kb on - strand at 532.950 kb on - strand at 532.951 kb on + strand at 532.951 kb on + strand at 532.951 kb on + strand at 532.951 kb on + strand at 532.951 kb on + strand at 532.951 kb on + strand at 532.951 kb on + strand at 532.953 kb on + strand at 532.953 kb on + strand at 533.341 kb on - strand at 533.396 kb on - strand at 533.433 kb on + strand at 533.433 kb on + strand at 533.433 kb on + strand at 533.433 kb on + strand at 533.433 kb on + strand at 533.433 kb on + strand at 533.433 kb on + strand at 533.434 kb on - strand at 533.528 kb on + strand at 533.529 kb on - strand at 533.609 kb on + strand at 533.645 kb on + strand at 533.645 kb on + strand at 533.646 kb on - strand at 533.650 kb on - strand at 533.674 kb on + strand at 533.674 kb on + strand at 533.674 kb on + strand at 533.675 kb on - strand at 533.675 kb on - strand at 533.675 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 531,407 - DDA3937_RS02395 0.49 +0.2 531,990 - -1.7 532,129 - -0.1 532,129 - -1.4 532,211 + DDA3937_RS02400 0.14 -0.7 532,211 + DDA3937_RS02400 0.14 -1.5 532,212 - DDA3937_RS02400 0.15 +0.5 532,212 - DDA3937_RS02400 0.15 -1.0 532,212 - DDA3937_RS02400 0.15 -2.8 532,212 - DDA3937_RS02400 0.15 -2.2 532,212 - DDA3937_RS02400 0.15 -0.4 532,212 - DDA3937_RS02400 0.15 -1.0 532,212 - DDA3937_RS02400 0.15 -1.9 532,212 - DDA3937_RS02400 0.15 +0.3 532,215 + DDA3937_RS02400 0.15 -0.3 532,215 + DDA3937_RS02400 0.15 -0.1 532,216 - DDA3937_RS02400 0.15 -0.5 532,216 - DDA3937_RS02400 0.15 -1.5 532,273 - DDA3937_RS02400 0.25 -0.1 532,412 + DDA3937_RS02400 0.49 +0.3 532,412 + DDA3937_RS02400 0.49 +1.2 532,413 - DDA3937_RS02400 0.49 -1.7 532,413 - DDA3937_RS02400 0.49 -0.7 532,498 - DDA3937_RS02400 0.63 -0.8 532,498 - DDA3937_RS02400 0.63 -0.7 532,665 - -1.9 532,665 - -0.7 532,697 - -0.4 532,697 - -0.3 532,697 - -0.7 532,697 - -1.9 532,697 - -0.2 532,746 - -1.3 532,746 - -1.7 532,751 - +0.9 532,751 - -1.9 532,770 - +0.2 532,770 - -2.4 532,770 - -1.0 532,772 - -2.3 532,772 - -1.8 532,772 - -1.2 532,797 + -0.4 532,797 + -0.3 532,798 - -0.3 532,798 - -1.5 532,804 + -1.0 532,804 + -0.5 532,853 + -0.4 532,853 + -0.4 532,853 + -1.0 532,853 + +0.1 532,853 + -0.7 532,853 + +1.4 532,853 + +0.7 532,853 + +0.3 532,853 + -0.3 532,853 + -0.2 532,854 - -1.1 532,854 - -2.1 532,854 - -1.0 532,854 - -0.8 532,854 - -2.5 532,854 - -0.1 532,862 - -1.5 532,862 - -0.3 532,862 - -1.7 532,862 - -0.1 532,909 + -0.5 532,909 + +0.6 532,909 + +1.5 532,919 - -0.8 532,920 + +0.6 532,920 + -0.3 532,921 - -0.8 532,921 - -1.2 532,931 + -0.3 532,931 + -1.8 532,931 + +1.3 532,932 - +0.9 532,949 + +0.1 532,949 + -0.4 532,949 + -1.7 532,949 + -2.2 532,949 + +0.9 532,949 + -1.4 532,949 + +0.7 532,950 - -2.4 532,950 - -3.0 532,950 - -2.2 532,951 + -3.0 532,951 + -1.1 532,951 + -0.6 532,951 + -1.7 532,951 + -1.4 532,951 + -1.9 532,951 + +0.4 532,953 + -0.1 532,953 + -0.1 533,341 - +0.9 533,396 - +0.1 533,433 + +0.1 533,433 + +1.4 533,433 + +0.5 533,433 + +0.1 533,433 + -1.5 533,433 + +0.7 533,433 + +0.3 533,434 - -0.1 533,528 + +0.8 533,529 - +0.7 533,609 + +0.4 533,645 + -0.1 533,645 + -0.3 533,646 - -0.2 533,650 - -2.1 533,674 + +1.5 533,674 + -2.7 533,674 + -0.7 533,675 - -0.1 533,675 - -1.1 533,675 - -1.0
Or see this region's nucleotide sequence