Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02330 and DDA3937_RS02335 are separated by 17 nucleotides DDA3937_RS02335 and DDA3937_RS02340 are separated by 49 nucleotides DDA3937_RS02340 and DDA3937_RS02345 are separated by 277 nucleotides DDA3937_RS02345 and DDA3937_RS02350 are separated by 365 nucleotides
DDA3937_RS02330: DDA3937_RS02330 - HTH-type transcriptional activator RhaR, at 517,200 to 518,054
_RS02330
DDA3937_RS02335: DDA3937_RS02335 - hypothetical protein, at 518,072 to 518,368
_RS02335
DDA3937_RS02340: DDA3937_RS02340 - hypothetical protein, at 518,418 to 518,687
_RS02340
DDA3937_RS02345: DDA3937_RS02345 - hypothetical protein, at 518,965 to 519,222
_RS02345
DDA3937_RS02350: DDA3937_RS02350 - ABC transporter ATP-binding protein, at 519,588 to 521,288
_RS02350
Position (kb) 518
519
520 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 517.971 kb on + strand at 518.050 kb on + strand at 518.050 kb on + strand at 518.051 kb on - strand at 518.051 kb on - strand at 518.051 kb on - strand at 518.051 kb on - strand at 518.052 kb on + strand at 518.053 kb on - strand at 518.060 kb on + strand at 518.074 kb on - strand at 518.074 kb on - strand at 518.115 kb on + strand, within DDA3937_RS02335 at 518.116 kb on - strand, within DDA3937_RS02335 at 518.116 kb on - strand, within DDA3937_RS02335 at 518.129 kb on + strand, within DDA3937_RS02335 at 518.138 kb on + strand, within DDA3937_RS02335 at 518.138 kb on + strand, within DDA3937_RS02335 at 518.139 kb on - strand, within DDA3937_RS02335 at 518.142 kb on + strand, within DDA3937_RS02335 at 518.142 kb on + strand, within DDA3937_RS02335 at 518.142 kb on + strand, within DDA3937_RS02335 at 518.142 kb on + strand, within DDA3937_RS02335 at 518.143 kb on - strand, within DDA3937_RS02335 at 518.143 kb on - strand, within DDA3937_RS02335 at 518.162 kb on - strand, within DDA3937_RS02335 at 518.190 kb on + strand at 518.275 kb on - strand at 518.275 kb on - strand, within DDA3937_RS02335 at 518.278 kb on + strand, within DDA3937_RS02335 at 518.279 kb on - strand, within DDA3937_RS02335 at 518.279 kb on - strand, within DDA3937_RS02335 at 518.286 kb on + strand, within DDA3937_RS02335 at 518.318 kb on + strand, within DDA3937_RS02335 at 518.466 kb on + strand, within DDA3937_RS02340 at 518.466 kb on + strand, within DDA3937_RS02340 at 518.469 kb on + strand, within DDA3937_RS02340 at 518.520 kb on - strand, within DDA3937_RS02340 at 518.521 kb on + strand, within DDA3937_RS02340 at 518.521 kb on + strand, within DDA3937_RS02340 at 518.522 kb on - strand, within DDA3937_RS02340 at 518.522 kb on - strand, within DDA3937_RS02340 at 518.522 kb on - strand, within DDA3937_RS02340 at 518.577 kb on - strand, within DDA3937_RS02340 at 518.609 kb on + strand, within DDA3937_RS02340 at 518.610 kb on - strand, within DDA3937_RS02340 at 518.610 kb on - strand, within DDA3937_RS02340 at 518.610 kb on - strand, within DDA3937_RS02340 at 518.610 kb on - strand, within DDA3937_RS02340 at 518.637 kb on + strand, within DDA3937_RS02340 at 518.692 kb on + strand at 518.730 kb on + strand at 518.734 kb on + strand at 518.970 kb on + strand at 518.970 kb on + strand at 518.971 kb on - strand at 518.971 kb on - strand at 518.971 kb on - strand at 518.973 kb on + strand at 518.979 kb on + strand at 518.980 kb on - strand at 519.001 kb on + strand, within DDA3937_RS02345 at 519.002 kb on - strand, within DDA3937_RS02345 at 519.049 kb on - strand, within DDA3937_RS02345 at 519.058 kb on + strand, within DDA3937_RS02345 at 519.096 kb on + strand, within DDA3937_RS02345 at 519.126 kb on - strand, within DDA3937_RS02345 at 519.214 kb on + strand at 519.303 kb on + strand at 519.306 kb on + strand at 519.309 kb on - strand at 519.349 kb on - strand at 519.621 kb on + strand at 519.658 kb on + strand at 519.681 kb on + strand at 519.776 kb on + strand at 519.920 kb on + strand, within DDA3937_RS02350 at 519.920 kb on + strand, within DDA3937_RS02350 at 519.920 kb on + strand, within DDA3937_RS02350 at 519.920 kb on + strand, within DDA3937_RS02350 at 519.920 kb on + strand, within DDA3937_RS02350 at 519.920 kb on + strand, within DDA3937_RS02350 at 519.921 kb on - strand, within DDA3937_RS02350 at 519.921 kb on - strand, within DDA3937_RS02350 at 519.921 kb on - strand, within DDA3937_RS02350 at 519.921 kb on - strand, within DDA3937_RS02350 at 519.921 kb on - strand, within DDA3937_RS02350 at 519.921 kb on - strand, within DDA3937_RS02350 at 519.921 kb on - strand, within DDA3937_RS02350 at 520.131 kb on - strand, within DDA3937_RS02350
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 517,971 + +0.9 518,050 + +0.2 518,050 + -1.9 518,051 - +0.3 518,051 - -0.1 518,051 - -0.8 518,051 - -0.7 518,052 + -0.7 518,053 - +3.5 518,060 + +0.3 518,074 - -0.6 518,074 - -0.7 518,115 + DDA3937_RS02335 0.14 -1.1 518,116 - DDA3937_RS02335 0.15 -0.7 518,116 - DDA3937_RS02335 0.15 +0.1 518,129 + DDA3937_RS02335 0.19 -0.5 518,138 + DDA3937_RS02335 0.22 +1.3 518,138 + DDA3937_RS02335 0.22 -1.1 518,139 - DDA3937_RS02335 0.23 -0.4 518,142 + DDA3937_RS02335 0.24 -1.1 518,142 + DDA3937_RS02335 0.24 -0.3 518,142 + DDA3937_RS02335 0.24 -0.7 518,142 + DDA3937_RS02335 0.24 +0.1 518,143 - DDA3937_RS02335 0.24 -0.9 518,143 - DDA3937_RS02335 0.24 +0.2 518,162 - DDA3937_RS02335 0.30 -0.2 518,190 + -0.1 518,275 - +0.2 518,275 - DDA3937_RS02335 0.68 -0.1 518,278 + DDA3937_RS02335 0.69 -0.1 518,279 - DDA3937_RS02335 0.70 +0.9 518,279 - DDA3937_RS02335 0.70 -0.4 518,286 + DDA3937_RS02335 0.72 -0.6 518,318 + DDA3937_RS02335 0.83 -0.1 518,466 + DDA3937_RS02340 0.18 +0.6 518,466 + DDA3937_RS02340 0.18 -0.4 518,469 + DDA3937_RS02340 0.19 +0.2 518,520 - DDA3937_RS02340 0.38 +0.2 518,521 + DDA3937_RS02340 0.38 -0.7 518,521 + DDA3937_RS02340 0.38 -0.3 518,522 - DDA3937_RS02340 0.39 -1.7 518,522 - DDA3937_RS02340 0.39 -0.1 518,522 - DDA3937_RS02340 0.39 -0.2 518,577 - DDA3937_RS02340 0.59 +0.4 518,609 + DDA3937_RS02340 0.71 -0.5 518,610 - DDA3937_RS02340 0.71 -0.0 518,610 - DDA3937_RS02340 0.71 -1.9 518,610 - DDA3937_RS02340 0.71 -0.9 518,610 - DDA3937_RS02340 0.71 -0.6 518,637 + DDA3937_RS02340 0.81 +0.3 518,692 + +0.2 518,730 + +1.3 518,734 + -0.4 518,970 + -0.2 518,970 + -1.6 518,971 - +0.4 518,971 - -0.7 518,971 - -0.3 518,973 + -1.1 518,979 + -0.2 518,980 - -0.1 519,001 + DDA3937_RS02345 0.14 -1.1 519,002 - DDA3937_RS02345 0.14 +0.9 519,049 - DDA3937_RS02345 0.33 -1.4 519,058 + DDA3937_RS02345 0.36 -1.1 519,096 + DDA3937_RS02345 0.51 -1.0 519,126 - DDA3937_RS02345 0.62 -1.9 519,214 + +0.1 519,303 + -0.3 519,306 + +0.5 519,309 - -0.2 519,349 - +1.3 519,621 + -0.7 519,658 + -0.4 519,681 + -1.1 519,776 + +0.9 519,920 + DDA3937_RS02350 0.20 -0.7 519,920 + DDA3937_RS02350 0.20 +0.5 519,920 + DDA3937_RS02350 0.20 +0.4 519,920 + DDA3937_RS02350 0.20 -1.7 519,920 + DDA3937_RS02350 0.20 -2.1 519,920 + DDA3937_RS02350 0.20 +0.3 519,921 - DDA3937_RS02350 0.20 +0.9 519,921 - DDA3937_RS02350 0.20 -2.8 519,921 - DDA3937_RS02350 0.20 +0.3 519,921 - DDA3937_RS02350 0.20 -1.3 519,921 - DDA3937_RS02350 0.20 -1.4 519,921 - DDA3937_RS02350 0.20 -0.2 519,921 - DDA3937_RS02350 0.20 -0.8 520,131 - DDA3937_RS02350 0.32 -0.4
Or see this region's nucleotide sequence