Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02320 and DDA3937_RS02325 are separated by 379 nucleotides DDA3937_RS02325 and DDA3937_RS02330 are separated by 37 nucleotides DDA3937_RS02330 and DDA3937_RS02335 are separated by 17 nucleotides
DDA3937_RS02320: DDA3937_RS02320 - rhamnulokinase, at 514,474 to 515,946
_RS02320
DDA3937_RS02325: DDA3937_RS02325 - HTH-type transcriptional activator RhaS, at 516,326 to 517,162
_RS02325
DDA3937_RS02330: DDA3937_RS02330 - HTH-type transcriptional activator RhaR, at 517,200 to 518,054
_RS02330
DDA3937_RS02335: DDA3937_RS02335 - hypothetical protein, at 518,072 to 518,368
_RS02335
Position (kb) 516
517
518 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 515.351 kb on + strand, within DDA3937_RS02320 at 515.351 kb on + strand, within DDA3937_RS02320 at 515.420 kb on + strand, within DDA3937_RS02320 at 515.421 kb on - strand, within DDA3937_RS02320 at 515.421 kb on - strand, within DDA3937_RS02320 at 515.421 kb on - strand, within DDA3937_RS02320 at 515.459 kb on + strand, within DDA3937_RS02320 at 515.459 kb on + strand, within DDA3937_RS02320 at 515.459 kb on + strand, within DDA3937_RS02320 at 515.460 kb on - strand, within DDA3937_RS02320 at 515.648 kb on + strand, within DDA3937_RS02320 at 515.648 kb on + strand, within DDA3937_RS02320 at 515.648 kb on + strand, within DDA3937_RS02320 at 515.649 kb on - strand, within DDA3937_RS02320 at 515.696 kb on - strand, within DDA3937_RS02320 at 515.696 kb on - strand, within DDA3937_RS02320 at 515.696 kb on - strand, within DDA3937_RS02320 at 515.696 kb on - strand, within DDA3937_RS02320 at 515.926 kb on + strand at 515.926 kb on + strand at 515.926 kb on + strand at 515.927 kb on - strand at 515.927 kb on - strand at 515.927 kb on - strand at 515.927 kb on - strand at 515.927 kb on - strand at 515.927 kb on - strand at 515.927 kb on - strand at 515.931 kb on - strand at 515.931 kb on - strand at 515.931 kb on - strand at 515.938 kb on - strand at 515.979 kb on + strand at 515.979 kb on + strand at 515.979 kb on + strand at 515.979 kb on + strand at 515.980 kb on - strand at 515.980 kb on - strand at 515.984 kb on - strand at 515.984 kb on - strand at 515.994 kb on + strand at 515.994 kb on + strand at 515.998 kb on + strand at 515.998 kb on + strand at 515.998 kb on + strand at 515.999 kb on - strand at 516.030 kb on - strand at 516.030 kb on - strand at 516.030 kb on - strand at 516.142 kb on + strand at 516.249 kb on - strand at 516.279 kb on + strand at 516.282 kb on + strand at 516.392 kb on - strand at 516.553 kb on - strand, within DDA3937_RS02325 at 516.553 kb on - strand, within DDA3937_RS02325 at 516.789 kb on + strand, within DDA3937_RS02325 at 516.790 kb on - strand, within DDA3937_RS02325 at 517.152 kb on - strand at 517.152 kb on - strand at 517.152 kb on - strand at 517.152 kb on - strand at 517.160 kb on + strand at 517.160 kb on + strand at 517.160 kb on + strand at 517.168 kb on + strand at 517.168 kb on + strand at 517.169 kb on - strand at 517.169 kb on - strand at 517.170 kb on + strand at 517.170 kb on + strand at 517.176 kb on + strand at 517.177 kb on - strand at 517.183 kb on + strand at 517.185 kb on + strand at 517.185 kb on + strand at 517.237 kb on - strand at 517.237 kb on - strand at 517.379 kb on + strand, within DDA3937_RS02330 at 517.380 kb on - strand, within DDA3937_RS02330 at 517.380 kb on - strand, within DDA3937_RS02330 at 517.382 kb on + strand, within DDA3937_RS02330 at 517.383 kb on - strand, within DDA3937_RS02330 at 517.383 kb on - strand, within DDA3937_RS02330 at 517.401 kb on + strand, within DDA3937_RS02330 at 517.401 kb on + strand, within DDA3937_RS02330 at 517.401 kb on + strand, within DDA3937_RS02330 at 517.401 kb on + strand, within DDA3937_RS02330 at 517.401 kb on + strand, within DDA3937_RS02330 at 517.401 kb on + strand, within DDA3937_RS02330 at 517.401 kb on + strand, within DDA3937_RS02330 at 517.402 kb on - strand, within DDA3937_RS02330 at 517.402 kb on - strand, within DDA3937_RS02330 at 517.402 kb on - strand, within DDA3937_RS02330 at 517.402 kb on - strand, within DDA3937_RS02330 at 517.402 kb on - strand, within DDA3937_RS02330 at 517.402 kb on - strand, within DDA3937_RS02330 at 517.402 kb on - strand, within DDA3937_RS02330 at 517.424 kb on + strand, within DDA3937_RS02330 at 517.425 kb on - strand, within DDA3937_RS02330 at 517.425 kb on - strand, within DDA3937_RS02330 at 517.425 kb on - strand, within DDA3937_RS02330 at 517.425 kb on - strand, within DDA3937_RS02330 at 517.428 kb on + strand at 517.428 kb on + strand, within DDA3937_RS02330 at 517.428 kb on + strand, within DDA3937_RS02330 at 517.428 kb on + strand, within DDA3937_RS02330 at 517.429 kb on - strand, within DDA3937_RS02330 at 517.429 kb on - strand, within DDA3937_RS02330 at 517.429 kb on - strand, within DDA3937_RS02330 at 517.429 kb on - strand, within DDA3937_RS02330 at 517.429 kb on - strand, within DDA3937_RS02330 at 517.429 kb on - strand, within DDA3937_RS02330 at 517.429 kb on - strand, within DDA3937_RS02330 at 517.429 kb on - strand, within DDA3937_RS02330 at 517.460 kb on + strand, within DDA3937_RS02330 at 517.460 kb on + strand, within DDA3937_RS02330 at 517.461 kb on - strand, within DDA3937_RS02330 at 517.461 kb on - strand, within DDA3937_RS02330 at 517.467 kb on + strand, within DDA3937_RS02330 at 517.467 kb on + strand, within DDA3937_RS02330 at 517.467 kb on + strand, within DDA3937_RS02330 at 517.467 kb on + strand, within DDA3937_RS02330 at 517.467 kb on + strand, within DDA3937_RS02330 at 517.467 kb on + strand, within DDA3937_RS02330 at 517.468 kb on - strand, within DDA3937_RS02330 at 517.468 kb on - strand, within DDA3937_RS02330 at 517.468 kb on - strand, within DDA3937_RS02330 at 517.468 kb on - strand, within DDA3937_RS02330 at 517.574 kb on + strand, within DDA3937_RS02330 at 517.574 kb on + strand, within DDA3937_RS02330 at 517.575 kb on - strand, within DDA3937_RS02330 at 517.575 kb on - strand, within DDA3937_RS02330 at 517.575 kb on - strand, within DDA3937_RS02330 at 517.801 kb on + strand, within DDA3937_RS02330 at 517.869 kb on + strand, within DDA3937_RS02330 at 517.869 kb on + strand, within DDA3937_RS02330 at 517.869 kb on + strand, within DDA3937_RS02330 at 517.870 kb on - strand, within DDA3937_RS02330 at 517.971 kb on + strand at 518.050 kb on + strand at 518.050 kb on + strand at 518.051 kb on - strand at 518.051 kb on - strand at 518.051 kb on - strand at 518.051 kb on - strand at 518.052 kb on + strand at 518.053 kb on - strand at 518.060 kb on + strand at 518.074 kb on - strand at 518.074 kb on - strand at 518.115 kb on + strand, within DDA3937_RS02335 at 518.116 kb on - strand, within DDA3937_RS02335 at 518.116 kb on - strand, within DDA3937_RS02335 at 518.129 kb on + strand, within DDA3937_RS02335 at 518.138 kb on + strand, within DDA3937_RS02335 at 518.138 kb on + strand, within DDA3937_RS02335 at 518.139 kb on - strand, within DDA3937_RS02335 at 518.142 kb on + strand, within DDA3937_RS02335 at 518.142 kb on + strand, within DDA3937_RS02335 at 518.142 kb on + strand, within DDA3937_RS02335 at 518.142 kb on + strand, within DDA3937_RS02335 at 518.143 kb on - strand, within DDA3937_RS02335 at 518.143 kb on - strand, within DDA3937_RS02335 at 518.162 kb on - strand, within DDA3937_RS02335
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 515,351 + DDA3937_RS02320 0.60 -0.7 515,351 + DDA3937_RS02320 0.60 +0.3 515,420 + DDA3937_RS02320 0.64 +1.0 515,421 - DDA3937_RS02320 0.64 +0.4 515,421 - DDA3937_RS02320 0.64 +0.9 515,421 - DDA3937_RS02320 0.64 +1.2 515,459 + DDA3937_RS02320 0.67 +0.8 515,459 + DDA3937_RS02320 0.67 +0.2 515,459 + DDA3937_RS02320 0.67 -0.7 515,460 - DDA3937_RS02320 0.67 -0.7 515,648 + DDA3937_RS02320 0.80 -0.1 515,648 + DDA3937_RS02320 0.80 -1.0 515,648 + DDA3937_RS02320 0.80 +0.9 515,649 - DDA3937_RS02320 0.80 -0.3 515,696 - DDA3937_RS02320 0.83 -0.1 515,696 - DDA3937_RS02320 0.83 +1.5 515,696 - DDA3937_RS02320 0.83 +0.4 515,696 - DDA3937_RS02320 0.83 +0.1 515,926 + -0.4 515,926 + -1.1 515,926 + +1.9 515,927 - +0.3 515,927 - +1.7 515,927 - +0.4 515,927 - -0.3 515,927 - -0.2 515,927 - +0.2 515,927 - +0.2 515,931 - -0.1 515,931 - -0.5 515,931 - +0.6 515,938 - -1.0 515,979 + -0.5 515,979 + +0.1 515,979 + -0.0 515,979 + +0.3 515,980 - -0.4 515,980 - -1.4 515,984 - -0.9 515,984 - -0.1 515,994 + -0.2 515,994 + +0.3 515,998 + -0.3 515,998 + -1.2 515,998 + -0.7 515,999 - -0.1 516,030 - +0.5 516,030 - +0.4 516,030 - -0.6 516,142 + +0.3 516,249 - +0.2 516,279 + -0.7 516,282 + +0.2 516,392 - +0.1 516,553 - DDA3937_RS02325 0.27 -0.7 516,553 - DDA3937_RS02325 0.27 -1.1 516,789 + DDA3937_RS02325 0.55 -0.1 516,790 - DDA3937_RS02325 0.55 -0.1 517,152 - -0.4 517,152 - -1.1 517,152 - -0.3 517,152 - -0.9 517,160 + -0.7 517,160 + -1.9 517,160 + -0.2 517,168 + +1.1 517,168 + -0.7 517,169 - +1.4 517,169 - +1.3 517,170 + -0.3 517,170 + -1.5 517,176 + +0.1 517,177 - -1.6 517,183 + +0.3 517,185 + -0.4 517,185 + +1.9 517,237 - -0.2 517,237 - -0.1 517,379 + DDA3937_RS02330 0.21 +0.0 517,380 - DDA3937_RS02330 0.21 -0.9 517,380 - DDA3937_RS02330 0.21 -0.1 517,382 + DDA3937_RS02330 0.21 -0.2 517,383 - DDA3937_RS02330 0.21 -0.1 517,383 - DDA3937_RS02330 0.21 +1.2 517,401 + DDA3937_RS02330 0.24 -0.3 517,401 + DDA3937_RS02330 0.24 +0.3 517,401 + DDA3937_RS02330 0.24 -0.5 517,401 + DDA3937_RS02330 0.24 +1.1 517,401 + DDA3937_RS02330 0.24 +0.9 517,401 + DDA3937_RS02330 0.24 -0.0 517,401 + DDA3937_RS02330 0.24 +0.4 517,402 - DDA3937_RS02330 0.24 -0.8 517,402 - DDA3937_RS02330 0.24 -0.3 517,402 - DDA3937_RS02330 0.24 -0.0 517,402 - DDA3937_RS02330 0.24 -0.2 517,402 - DDA3937_RS02330 0.24 +0.6 517,402 - DDA3937_RS02330 0.24 -0.2 517,402 - DDA3937_RS02330 0.24 +0.2 517,424 + DDA3937_RS02330 0.26 +1.5 517,425 - DDA3937_RS02330 0.26 +0.8 517,425 - DDA3937_RS02330 0.26 +0.2 517,425 - DDA3937_RS02330 0.26 +0.8 517,425 - DDA3937_RS02330 0.26 +0.8 517,428 + -1.7 517,428 + DDA3937_RS02330 0.27 +0.1 517,428 + DDA3937_RS02330 0.27 +0.4 517,428 + DDA3937_RS02330 0.27 +0.3 517,429 - DDA3937_RS02330 0.27 +1.6 517,429 - DDA3937_RS02330 0.27 -0.3 517,429 - DDA3937_RS02330 0.27 +0.3 517,429 - DDA3937_RS02330 0.27 +0.7 517,429 - DDA3937_RS02330 0.27 -0.3 517,429 - DDA3937_RS02330 0.27 -1.1 517,429 - DDA3937_RS02330 0.27 -0.7 517,429 - DDA3937_RS02330 0.27 -0.9 517,460 + DDA3937_RS02330 0.30 +1.3 517,460 + DDA3937_RS02330 0.30 -0.5 517,461 - DDA3937_RS02330 0.31 +0.3 517,461 - DDA3937_RS02330 0.31 +0.6 517,467 + DDA3937_RS02330 0.31 -1.9 517,467 + DDA3937_RS02330 0.31 -0.7 517,467 + DDA3937_RS02330 0.31 +1.9 517,467 + DDA3937_RS02330 0.31 -1.7 517,467 + DDA3937_RS02330 0.31 -0.8 517,467 + DDA3937_RS02330 0.31 -1.2 517,468 - DDA3937_RS02330 0.31 +0.3 517,468 - DDA3937_RS02330 0.31 +0.3 517,468 - DDA3937_RS02330 0.31 -0.4 517,468 - DDA3937_RS02330 0.31 -0.3 517,574 + DDA3937_RS02330 0.44 +0.7 517,574 + DDA3937_RS02330 0.44 +0.6 517,575 - DDA3937_RS02330 0.44 -0.8 517,575 - DDA3937_RS02330 0.44 +1.9 517,575 - DDA3937_RS02330 0.44 -0.5 517,801 + DDA3937_RS02330 0.70 +0.2 517,869 + DDA3937_RS02330 0.78 -0.5 517,869 + DDA3937_RS02330 0.78 -0.1 517,869 + DDA3937_RS02330 0.78 +0.3 517,870 - DDA3937_RS02330 0.78 -0.5 517,971 + +0.9 518,050 + +0.2 518,050 + -1.9 518,051 - +0.3 518,051 - -0.1 518,051 - -0.8 518,051 - -0.7 518,052 + -0.7 518,053 - +3.5 518,060 + +0.3 518,074 - -0.6 518,074 - -0.7 518,115 + DDA3937_RS02335 0.14 -1.1 518,116 - DDA3937_RS02335 0.15 -0.7 518,116 - DDA3937_RS02335 0.15 +0.1 518,129 + DDA3937_RS02335 0.19 -0.5 518,138 + DDA3937_RS02335 0.22 +1.3 518,138 + DDA3937_RS02335 0.22 -1.1 518,139 - DDA3937_RS02335 0.23 -0.4 518,142 + DDA3937_RS02335 0.24 -1.1 518,142 + DDA3937_RS02335 0.24 -0.3 518,142 + DDA3937_RS02335 0.24 -0.7 518,142 + DDA3937_RS02335 0.24 +0.1 518,143 - DDA3937_RS02335 0.24 -0.9 518,143 - DDA3937_RS02335 0.24 +0.2 518,162 - DDA3937_RS02335 0.30 -0.2
Or see this region's nucleotide sequence