Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02225 and DDA3937_RS02230 are separated by 46 nucleotides DDA3937_RS02230 and DDA3937_RS02235 are separated by 9 nucleotides
DDA3937_RS02225: DDA3937_RS02225 - ABC transporter substrate-binding protein, at 492,891 to 494,423
_RS02225
DDA3937_RS02230: DDA3937_RS02230 - ABC transporter permease, at 494,470 to 495,387
_RS02230
DDA3937_RS02235: DDA3937_RS02235 - ABC transporter permease, at 495,397 to 496,323
_RS02235
Position (kb) 494
495
496 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 493.521 kb on + strand, within DDA3937_RS02225 at 493.798 kb on - strand, within DDA3937_RS02225 at 493.848 kb on - strand, within DDA3937_RS02225 at 494.142 kb on + strand, within DDA3937_RS02225 at 494.187 kb on - strand, within DDA3937_RS02225 at 494.278 kb on - strand at 494.313 kb on + strand at 494.313 kb on + strand at 494.313 kb on + strand at 494.313 kb on + strand at 494.313 kb on + strand at 494.313 kb on + strand at 494.314 kb on - strand at 494.314 kb on - strand at 494.314 kb on - strand at 494.314 kb on - strand at 494.316 kb on - strand at 494.316 kb on - strand at 494.316 kb on - strand at 494.335 kb on - strand at 494.347 kb on - strand at 494.355 kb on - strand at 494.355 kb on - strand at 494.355 kb on - strand at 494.355 kb on - strand at 494.355 kb on - strand at 494.421 kb on + strand at 494.421 kb on + strand at 494.422 kb on - strand at 494.457 kb on - strand at 494.469 kb on + strand at 494.470 kb on - strand at 494.479 kb on + strand at 494.480 kb on - strand at 494.495 kb on + strand at 494.521 kb on - strand at 494.842 kb on - strand, within DDA3937_RS02230 at 495.014 kb on - strand, within DDA3937_RS02230 at 495.014 kb on - strand, within DDA3937_RS02230 at 495.014 kb on - strand, within DDA3937_RS02230 at 495.077 kb on - strand, within DDA3937_RS02230 at 495.114 kb on + strand, within DDA3937_RS02230 at 495.115 kb on - strand, within DDA3937_RS02230 at 495.115 kb on - strand, within DDA3937_RS02230 at 495.319 kb on + strand at 495.320 kb on - strand at 495.385 kb on + strand at 495.385 kb on + strand at 495.386 kb on - strand at 495.546 kb on + strand, within DDA3937_RS02235 at 495.546 kb on + strand, within DDA3937_RS02235 at 495.546 kb on + strand, within DDA3937_RS02235 at 495.547 kb on - strand, within DDA3937_RS02235 at 495.547 kb on - strand, within DDA3937_RS02235 at 495.547 kb on - strand, within DDA3937_RS02235 at 495.547 kb on - strand, within DDA3937_RS02235 at 495.547 kb on - strand, within DDA3937_RS02235 at 495.547 kb on - strand at 495.547 kb on - strand, within DDA3937_RS02235 at 495.547 kb on - strand, within DDA3937_RS02235 at 495.549 kb on - strand, within DDA3937_RS02235 at 495.549 kb on - strand, within DDA3937_RS02235 at 495.549 kb on - strand, within DDA3937_RS02235 at 495.549 kb on - strand, within DDA3937_RS02235 at 495.549 kb on - strand, within DDA3937_RS02235 at 495.549 kb on - strand, within DDA3937_RS02235 at 495.592 kb on + strand, within DDA3937_RS02235 at 495.689 kb on - strand, within DDA3937_RS02235 at 495.793 kb on + strand, within DDA3937_RS02235 at 495.826 kb on + strand, within DDA3937_RS02235 at 495.827 kb on - strand, within DDA3937_RS02235 at 495.827 kb on - strand, within DDA3937_RS02235 at 495.827 kb on - strand, within DDA3937_RS02235 at 495.827 kb on - strand, within DDA3937_RS02235 at 495.827 kb on - strand, within DDA3937_RS02235 at 495.827 kb on - strand, within DDA3937_RS02235 at 496.201 kb on + strand, within DDA3937_RS02235 at 496.201 kb on + strand, within DDA3937_RS02235 at 496.201 kb on + strand, within DDA3937_RS02235 at 496.201 kb on + strand, within DDA3937_RS02235 at 496.201 kb on + strand, within DDA3937_RS02235 at 496.201 kb on + strand, within DDA3937_RS02235 at 496.201 kb on + strand at 496.201 kb on + strand, within DDA3937_RS02235 at 496.201 kb on + strand, within DDA3937_RS02235 at 496.201 kb on + strand, within DDA3937_RS02235 at 496.202 kb on - strand, within DDA3937_RS02235 at 496.202 kb on - strand, within DDA3937_RS02235 at 496.202 kb on - strand, within DDA3937_RS02235 at 496.331 kb on - strand at 496.331 kb on - strand at 496.349 kb on + strand at 496.349 kb on + strand at 496.350 kb on - strand at 496.350 kb on - strand at 496.350 kb on - strand at 496.350 kb on - strand at 496.355 kb on + strand at 496.355 kb on + strand at 496.355 kb on + strand at 496.355 kb on + strand at 496.355 kb on + strand at 496.355 kb on + strand at 496.355 kb on + strand at 496.356 kb on - strand at 496.356 kb on - strand at 496.356 kb on - strand at 496.356 kb on - strand at 496.356 kb on - strand at 496.356 kb on - strand at 496.356 kb on - strand at 496.356 kb on - strand at 496.371 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 493,521 + DDA3937_RS02225 0.41 -0.1 493,798 - DDA3937_RS02225 0.59 +1.5 493,848 - DDA3937_RS02225 0.62 +0.5 494,142 + DDA3937_RS02225 0.82 +0.5 494,187 - DDA3937_RS02225 0.85 -0.2 494,278 - -0.9 494,313 + -1.5 494,313 + +1.9 494,313 + -0.5 494,313 + +1.3 494,313 + -0.2 494,313 + +0.4 494,314 - -1.8 494,314 - -0.1 494,314 - +2.5 494,314 - -0.2 494,316 - +0.5 494,316 - -0.4 494,316 - -1.2 494,335 - -0.9 494,347 - -0.1 494,355 - -0.1 494,355 - -1.2 494,355 - -1.8 494,355 - +0.2 494,355 - -1.2 494,421 + -0.6 494,421 + -0.1 494,422 - +0.5 494,457 - +2.3 494,469 + +0.2 494,470 - +0.4 494,479 + +0.4 494,480 - -0.1 494,495 + +0.4 494,521 - +0.5 494,842 - DDA3937_RS02230 0.41 +0.9 495,014 - DDA3937_RS02230 0.59 +0.8 495,014 - DDA3937_RS02230 0.59 -0.6 495,014 - DDA3937_RS02230 0.59 +0.3 495,077 - DDA3937_RS02230 0.66 -0.1 495,114 + DDA3937_RS02230 0.70 -0.1 495,115 - DDA3937_RS02230 0.70 +0.8 495,115 - DDA3937_RS02230 0.70 -0.0 495,319 + +0.9 495,320 - +0.8 495,385 + +0.2 495,385 + +0.5 495,386 - -1.2 495,546 + DDA3937_RS02235 0.16 -0.3 495,546 + DDA3937_RS02235 0.16 -0.0 495,546 + DDA3937_RS02235 0.16 -0.2 495,547 - DDA3937_RS02235 0.16 -0.1 495,547 - DDA3937_RS02235 0.16 -0.9 495,547 - DDA3937_RS02235 0.16 +0.2 495,547 - DDA3937_RS02235 0.16 +0.0 495,547 - DDA3937_RS02235 0.16 -0.2 495,547 - +2.7 495,547 - DDA3937_RS02235 0.16 +0.9 495,547 - DDA3937_RS02235 0.16 -0.5 495,549 - DDA3937_RS02235 0.16 +0.5 495,549 - DDA3937_RS02235 0.16 +0.9 495,549 - DDA3937_RS02235 0.16 +1.1 495,549 - DDA3937_RS02235 0.16 -1.1 495,549 - DDA3937_RS02235 0.16 -0.9 495,549 - DDA3937_RS02235 0.16 +0.1 495,592 + DDA3937_RS02235 0.21 -0.9 495,689 - DDA3937_RS02235 0.31 -0.2 495,793 + DDA3937_RS02235 0.43 -0.6 495,826 + DDA3937_RS02235 0.46 +0.5 495,827 - DDA3937_RS02235 0.46 +0.6 495,827 - DDA3937_RS02235 0.46 -0.4 495,827 - DDA3937_RS02235 0.46 -0.5 495,827 - DDA3937_RS02235 0.46 +0.6 495,827 - DDA3937_RS02235 0.46 -0.1 495,827 - DDA3937_RS02235 0.46 -0.2 496,201 + DDA3937_RS02235 0.87 -0.3 496,201 + DDA3937_RS02235 0.87 -0.5 496,201 + DDA3937_RS02235 0.87 +0.2 496,201 + DDA3937_RS02235 0.87 -0.6 496,201 + DDA3937_RS02235 0.87 -0.1 496,201 + DDA3937_RS02235 0.87 +0.4 496,201 + +2.5 496,201 + DDA3937_RS02235 0.87 -0.2 496,201 + DDA3937_RS02235 0.87 -0.1 496,201 + DDA3937_RS02235 0.87 -0.1 496,202 - DDA3937_RS02235 0.87 -0.6 496,202 - DDA3937_RS02235 0.87 +0.5 496,202 - DDA3937_RS02235 0.87 +0.7 496,331 - +0.8 496,331 - -0.5 496,349 + -3.1 496,349 + -0.1 496,350 - -2.4 496,350 - +0.6 496,350 - +0.0 496,350 - +0.3 496,355 + -0.4 496,355 + -1.1 496,355 + -1.0 496,355 + -0.3 496,355 + +0.2 496,355 + -0.1 496,355 + +0.8 496,356 - -1.4 496,356 - -1.0 496,356 - -0.4 496,356 - +0.4 496,356 - +0.1 496,356 - +0.6 496,356 - +0.4 496,356 - -0.4 496,371 - +0.2
Or see this region's nucleotide sequence