Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS02195

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS02190 and DDA3937_RS02195 overlap by 8 nucleotidesDDA3937_RS02195 and DDA3937_RS02200 are separated by 10 nucleotidesDDA3937_RS02200 and DDA3937_RS02205 are separated by 102 nucleotides DDA3937_RS02190: DDA3937_RS02190 - ABC transporter permease, at 486,053 to 487,120 _RS02190 DDA3937_RS02195: DDA3937_RS02195 - FGGY-family carbohydrate kinase, at 487,113 to 488,624 _RS02195 DDA3937_RS02200: DDA3937_RS02200 - SDR family oxidoreductase, at 488,635 to 489,432 _RS02200 DDA3937_RS02205: DDA3937_RS02205 - type-1Aa cytolytic delta-endotoxin, at 489,535 to 490,194 _RS02205 Position (kb) 487 488 489Strain fitness (log2 ratio) -2 -1 0 1 2at 486.220 kb on + strand, within DDA3937_RS02190at 486.220 kb on + strand, within DDA3937_RS02190at 486.220 kb on + strand, within DDA3937_RS02190at 486.220 kb on + strand, within DDA3937_RS02190at 486.451 kb on + strand, within DDA3937_RS02190at 486.451 kb on + strand, within DDA3937_RS02190at 486.451 kb on + strand, within DDA3937_RS02190at 486.452 kb on - strand, within DDA3937_RS02190at 486.467 kb on + strand, within DDA3937_RS02190at 486.467 kb on + strand, within DDA3937_RS02190at 486.467 kb on + strand, within DDA3937_RS02190at 486.467 kb on + strand, within DDA3937_RS02190at 486.467 kb on + strand, within DDA3937_RS02190at 486.467 kb on + strand, within DDA3937_RS02190at 486.467 kb on + strand, within DDA3937_RS02190at 486.467 kb on + strand, within DDA3937_RS02190at 486.467 kb on + strand, within DDA3937_RS02190at 486.467 kb on + strand, within DDA3937_RS02190at 486.468 kb on - strand, within DDA3937_RS02190at 486.468 kb on - strand, within DDA3937_RS02190at 486.468 kb on - strandat 486.468 kb on - strand, within DDA3937_RS02190at 486.468 kb on - strand, within DDA3937_RS02190at 486.468 kb on - strand, within DDA3937_RS02190at 486.468 kb on - strand, within DDA3937_RS02190at 486.468 kb on - strand, within DDA3937_RS02190at 486.468 kb on - strand, within DDA3937_RS02190at 486.512 kb on + strand, within DDA3937_RS02190at 486.586 kb on + strand, within DDA3937_RS02190at 486.586 kb on + strand, within DDA3937_RS02190at 486.586 kb on + strand, within DDA3937_RS02190at 486.586 kb on + strand, within DDA3937_RS02190at 486.586 kb on + strand, within DDA3937_RS02190at 486.587 kb on - strand, within DDA3937_RS02190at 486.587 kb on - strand, within DDA3937_RS02190at 486.591 kb on - strand, within DDA3937_RS02190at 486.591 kb on - strand, within DDA3937_RS02190at 486.636 kb on - strand, within DDA3937_RS02190at 486.665 kb on + strand, within DDA3937_RS02190at 486.665 kb on + strand, within DDA3937_RS02190at 486.665 kb on + strand, within DDA3937_RS02190at 486.666 kb on - strand, within DDA3937_RS02190at 486.666 kb on - strand, within DDA3937_RS02190at 486.666 kb on - strand, within DDA3937_RS02190at 486.667 kb on + strand, within DDA3937_RS02190at 486.667 kb on + strand, within DDA3937_RS02190at 486.667 kb on + strand, within DDA3937_RS02190at 486.667 kb on + strand, within DDA3937_RS02190at 486.667 kb on + strand, within DDA3937_RS02190at 486.668 kb on - strand, within DDA3937_RS02190at 486.668 kb on - strand, within DDA3937_RS02190at 486.668 kb on - strand, within DDA3937_RS02190at 486.668 kb on - strand, within DDA3937_RS02190at 486.668 kb on - strand, within DDA3937_RS02190at 486.668 kb on - strand, within DDA3937_RS02190at 486.668 kb on - strand, within DDA3937_RS02190at 486.668 kb on - strand, within DDA3937_RS02190at 486.668 kb on - strand, within DDA3937_RS02190at 486.668 kb on - strand, within DDA3937_RS02190at 486.671 kb on + strand, within DDA3937_RS02190at 486.671 kb on + strand, within DDA3937_RS02190at 486.672 kb on - strand, within DDA3937_RS02190at 486.989 kb on - strand, within DDA3937_RS02190at 487.118 kb on + strandat 487.118 kb on + strandat 487.119 kb on - strandat 487.119 kb on - strandat 487.408 kb on + strand, within DDA3937_RS02195at 487.409 kb on - strand, within DDA3937_RS02195at 487.450 kb on + strand, within DDA3937_RS02195at 487.450 kb on + strand, within DDA3937_RS02195at 487.595 kb on + strand, within DDA3937_RS02195at 487.595 kb on + strand, within DDA3937_RS02195at 487.682 kb on + strand, within DDA3937_RS02195at 487.683 kb on - strand, within DDA3937_RS02195at 487.899 kb on + strand, within DDA3937_RS02195at 487.899 kb on + strand, within DDA3937_RS02195at 487.900 kb on - strand, within DDA3937_RS02195at 487.900 kb on - strand, within DDA3937_RS02195at 487.900 kb on - strand, within DDA3937_RS02195at 488.002 kb on - strand, within DDA3937_RS02195at 488.053 kb on + strand, within DDA3937_RS02195at 488.054 kb on - strand, within DDA3937_RS02195at 488.054 kb on - strand, within DDA3937_RS02195at 488.054 kb on - strand, within DDA3937_RS02195at 488.145 kb on + strand, within DDA3937_RS02195at 488.145 kb on + strand, within DDA3937_RS02195at 488.146 kb on - strand, within DDA3937_RS02195at 488.146 kb on - strand, within DDA3937_RS02195at 488.146 kb on - strand, within DDA3937_RS02195at 488.146 kb on - strand, within DDA3937_RS02195at 488.519 kb on + strandat 488.519 kb on + strandat 488.651 kb on - strandat 488.655 kb on + strandat 488.655 kb on + strandat 488.655 kb on + strandat 488.655 kb on + strandat 488.655 kb on + strandat 488.783 kb on + strand, within DDA3937_RS02200at 488.783 kb on + strand, within DDA3937_RS02200at 488.783 kb on + strand, within DDA3937_RS02200at 488.783 kb on + strand, within DDA3937_RS02200at 488.784 kb on - strand, within DDA3937_RS02200at 488.784 kb on - strand, within DDA3937_RS02200at 488.784 kb on - strand, within DDA3937_RS02200at 488.847 kb on - strand, within DDA3937_RS02200at 488.847 kb on - strand, within DDA3937_RS02200at 488.857 kb on + strand, within DDA3937_RS02200at 488.858 kb on - strand, within DDA3937_RS02200at 488.858 kb on - strand, within DDA3937_RS02200at 488.858 kb on - strand, within DDA3937_RS02200at 488.929 kb on + strand, within DDA3937_RS02200at 488.930 kb on - strand, within DDA3937_RS02200at 488.979 kb on + strand, within DDA3937_RS02200at 488.990 kb on + strand, within DDA3937_RS02200at 488.991 kb on - strand, within DDA3937_RS02200at 489.019 kb on + strand, within DDA3937_RS02200at 489.020 kb on - strand, within DDA3937_RS02200at 489.020 kb on - strand, within DDA3937_RS02200at 489.020 kb on - strandat 489.051 kb on + strand, within DDA3937_RS02200at 489.051 kb on + strand, within DDA3937_RS02200at 489.052 kb on - strand, within DDA3937_RS02200at 489.054 kb on + strand, within DDA3937_RS02200at 489.055 kb on - strand, within DDA3937_RS02200at 489.055 kb on - strand, within DDA3937_RS02200at 489.084 kb on + strand, within DDA3937_RS02200at 489.084 kb on + strand, within DDA3937_RS02200at 489.085 kb on - strand, within DDA3937_RS02200at 489.085 kb on - strand, within DDA3937_RS02200at 489.085 kb on - strand, within DDA3937_RS02200at 489.085 kb on - strand, within DDA3937_RS02200at 489.088 kb on + strand, within DDA3937_RS02200at 489.088 kb on + strand, within DDA3937_RS02200at 489.088 kb on + strand, within DDA3937_RS02200at 489.088 kb on + strand, within DDA3937_RS02200at 489.088 kb on + strand, within DDA3937_RS02200at 489.088 kb on + strand, within DDA3937_RS02200at 489.089 kb on - strandat 489.089 kb on - strand, within DDA3937_RS02200at 489.089 kb on - strand, within DDA3937_RS02200at 489.090 kb on + strand, within DDA3937_RS02200at 489.091 kb on - strand, within DDA3937_RS02200at 489.220 kb on + strand, within DDA3937_RS02200at 489.300 kb on - strand, within DDA3937_RS02200at 489.382 kb on + strandat 489.383 kb on - strandat 489.383 kb on - strandat 489.383 kb on - strandat 489.402 kb on + strandat 489.403 kb on - strandat 489.544 kb on + strandat 489.545 kb on - strandat 489.584 kb on + strandat 489.584 kb on + strandat 489.584 kb on + strandat 489.584 kb on + strandat 489.584 kb on + strandat 489.585 kb on - strandat 489.585 kb on - strandat 489.587 kb on + strandat 489.587 kb on + strandat 489.587 kb on + strandat 489.588 kb on - strandat 489.588 kb on - strandat 489.588 kb on - strandat 489.588 kb on - strandat 489.588 kb on - strandat 489.588 kb on - strandat 489.588 kb on - strandat 489.588 kb on - strandat 489.588 kb on - strandat 489.610 kb on - strand, within DDA3937_RS02205

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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486,220 + DDA3937_RS02190 0.16 +0.0
486,220 + DDA3937_RS02190 0.16 +1.9
486,220 + DDA3937_RS02190 0.16 -1.0
486,220 + DDA3937_RS02190 0.16 -0.1
486,451 + DDA3937_RS02190 0.37 +0.2
486,451 + DDA3937_RS02190 0.37 -0.2
486,451 + DDA3937_RS02190 0.37 +0.3
486,452 - DDA3937_RS02190 0.37 -0.6
486,467 + DDA3937_RS02190 0.39 -0.6
486,467 + DDA3937_RS02190 0.39 -0.2
486,467 + DDA3937_RS02190 0.39 -1.0
486,467 + DDA3937_RS02190 0.39 -0.4
486,467 + DDA3937_RS02190 0.39 +0.9
486,467 + DDA3937_RS02190 0.39 -0.2
486,467 + DDA3937_RS02190 0.39 +0.0
486,467 + DDA3937_RS02190 0.39 -0.4
486,467 + DDA3937_RS02190 0.39 -0.4
486,467 + DDA3937_RS02190 0.39 -0.5
486,468 - DDA3937_RS02190 0.39 -0.5
486,468 - DDA3937_RS02190 0.39 -0.3
486,468 - +1.7
486,468 - DDA3937_RS02190 0.39 -0.4
486,468 - DDA3937_RS02190 0.39 +0.2
486,468 - DDA3937_RS02190 0.39 +0.6
486,468 - DDA3937_RS02190 0.39 -0.2
486,468 - DDA3937_RS02190 0.39 -0.1
486,468 - DDA3937_RS02190 0.39 -0.1
486,512 + DDA3937_RS02190 0.43 +0.0
486,586 + DDA3937_RS02190 0.50 -0.6
486,586 + DDA3937_RS02190 0.50 -1.9
486,586 + DDA3937_RS02190 0.50 -0.3
486,586 + DDA3937_RS02190 0.50 +0.2
486,586 + DDA3937_RS02190 0.50 -0.3
486,587 - DDA3937_RS02190 0.50 -0.0
486,587 - DDA3937_RS02190 0.50 -1.4
486,591 - DDA3937_RS02190 0.50 +0.7
486,591 - DDA3937_RS02190 0.50 +0.1
486,636 - DDA3937_RS02190 0.55 +0.9
486,665 + DDA3937_RS02190 0.57 -0.4
486,665 + DDA3937_RS02190 0.57 -1.4
486,665 + DDA3937_RS02190 0.57 -0.6
486,666 - DDA3937_RS02190 0.57 +0.5
486,666 - DDA3937_RS02190 0.57 -0.2
486,666 - DDA3937_RS02190 0.57 -0.8
486,667 + DDA3937_RS02190 0.57 +0.6
486,667 + DDA3937_RS02190 0.57 -0.9
486,667 + DDA3937_RS02190 0.57 +0.5
486,667 + DDA3937_RS02190 0.57 -0.2
486,667 + DDA3937_RS02190 0.57 +0.7
486,668 - DDA3937_RS02190 0.58 +1.5
486,668 - DDA3937_RS02190 0.58 +0.1
486,668 - DDA3937_RS02190 0.58 -0.1
486,668 - DDA3937_RS02190 0.58 +2.5
486,668 - DDA3937_RS02190 0.58 -0.1
486,668 - DDA3937_RS02190 0.58 +0.5
486,668 - DDA3937_RS02190 0.58 -0.1
486,668 - DDA3937_RS02190 0.58 -0.7
486,668 - DDA3937_RS02190 0.58 -0.8
486,668 - DDA3937_RS02190 0.58 -0.1
486,671 + DDA3937_RS02190 0.58 -0.5
486,671 + DDA3937_RS02190 0.58 -0.6
486,672 - DDA3937_RS02190 0.58 -0.6
486,989 - DDA3937_RS02190 0.88 -0.1
487,118 + +0.9
487,118 + -0.2
487,119 - +1.2
487,119 - -2.2
487,408 + DDA3937_RS02195 0.20 +0.1
487,409 - DDA3937_RS02195 0.20 +0.1
487,450 + DDA3937_RS02195 0.22 -0.5
487,450 + DDA3937_RS02195 0.22 -1.6
487,595 + DDA3937_RS02195 0.32 +1.2
487,595 + DDA3937_RS02195 0.32 -0.0
487,682 + DDA3937_RS02195 0.38 -0.4
487,683 - DDA3937_RS02195 0.38 -0.1
487,899 + DDA3937_RS02195 0.52 +0.6
487,899 + DDA3937_RS02195 0.52 +0.2
487,900 - DDA3937_RS02195 0.52 +0.6
487,900 - DDA3937_RS02195 0.52 +0.3
487,900 - DDA3937_RS02195 0.52 -0.4
488,002 - DDA3937_RS02195 0.59 -0.0
488,053 + DDA3937_RS02195 0.62 -0.3
488,054 - DDA3937_RS02195 0.62 -0.1
488,054 - DDA3937_RS02195 0.62 +1.4
488,054 - DDA3937_RS02195 0.62 -1.2
488,145 + DDA3937_RS02195 0.68 -1.6
488,145 + DDA3937_RS02195 0.68 +0.6
488,146 - DDA3937_RS02195 0.68 -0.2
488,146 - DDA3937_RS02195 0.68 +0.3
488,146 - DDA3937_RS02195 0.68 -1.1
488,146 - DDA3937_RS02195 0.68 +0.2
488,519 + -0.3
488,519 + +0.7
488,651 - +1.1
488,655 + -1.7
488,655 + -0.7
488,655 + -1.6
488,655 + -0.2
488,655 + -0.3
488,783 + DDA3937_RS02200 0.19 -0.2
488,783 + DDA3937_RS02200 0.19 +0.6
488,783 + DDA3937_RS02200 0.19 +0.7
488,783 + DDA3937_RS02200 0.19 -0.4
488,784 - DDA3937_RS02200 0.19 -0.2
488,784 - DDA3937_RS02200 0.19 +0.4
488,784 - DDA3937_RS02200 0.19 -0.9
488,847 - DDA3937_RS02200 0.27 -0.2
488,847 - DDA3937_RS02200 0.27 -0.8
488,857 + DDA3937_RS02200 0.28 +1.4
488,858 - DDA3937_RS02200 0.28 +1.0
488,858 - DDA3937_RS02200 0.28 +0.3
488,858 - DDA3937_RS02200 0.28 -0.1
488,929 + DDA3937_RS02200 0.37 +0.2
488,930 - DDA3937_RS02200 0.37 -0.8
488,979 + DDA3937_RS02200 0.43 +0.2
488,990 + DDA3937_RS02200 0.44 -0.1
488,991 - DDA3937_RS02200 0.45 -1.1
489,019 + DDA3937_RS02200 0.48 -0.5
489,020 - DDA3937_RS02200 0.48 -0.2
489,020 - DDA3937_RS02200 0.48 -0.1
489,020 - -0.1
489,051 + DDA3937_RS02200 0.52 -2.5
489,051 + DDA3937_RS02200 0.52 -0.6
489,052 - DDA3937_RS02200 0.52 -0.8
489,054 + DDA3937_RS02200 0.53 -0.5
489,055 - DDA3937_RS02200 0.53 -0.5
489,055 - DDA3937_RS02200 0.53 +0.0
489,084 + DDA3937_RS02200 0.56 +0.7
489,084 + DDA3937_RS02200 0.56 +0.9
489,085 - DDA3937_RS02200 0.56 -0.5
489,085 - DDA3937_RS02200 0.56 -0.1
489,085 - DDA3937_RS02200 0.56 -0.2
489,085 - DDA3937_RS02200 0.56 -0.6
489,088 + DDA3937_RS02200 0.57 -0.1
489,088 + DDA3937_RS02200 0.57 +0.2
489,088 + DDA3937_RS02200 0.57 -1.6
489,088 + DDA3937_RS02200 0.57 -0.1
489,088 + DDA3937_RS02200 0.57 -1.2
489,088 + DDA3937_RS02200 0.57 +0.7
489,089 - +1.5
489,089 - DDA3937_RS02200 0.57 -1.1
489,089 - DDA3937_RS02200 0.57 +0.0
489,090 + DDA3937_RS02200 0.57 -0.4
489,091 - DDA3937_RS02200 0.57 +0.9
489,220 + DDA3937_RS02200 0.73 -1.1
489,300 - DDA3937_RS02200 0.83 +0.2
489,382 + -1.0
489,383 - -0.6
489,383 - +2.7
489,383 - -0.1
489,402 + +1.4
489,403 - -0.6
489,544 + -1.1
489,545 - +0.3
489,584 + +0.6
489,584 + -0.1
489,584 + -1.4
489,584 + -0.9
489,584 + -1.1
489,585 - +0.4
489,585 - -0.4
489,587 + -0.5
489,587 + -0.2
489,587 + +0.1
489,588 - -0.1
489,588 - -0.9
489,588 - +0.5
489,588 - +0.4
489,588 - -0.9
489,588 - -0.4
489,588 - -0.4
489,588 - -0.1
489,588 - +0.3
489,610 - DDA3937_RS02205 0.11 +0.1

Or see this region's nucleotide sequence