Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS02035

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS02030 and DDA3937_RS02035 are separated by 2 nucleotidesDDA3937_RS02035 and DDA3937_RS02040 overlap by 4 nucleotidesDDA3937_RS02040 and DDA3937_RS02045 overlap by 8 nucleotides DDA3937_RS02030: DDA3937_RS02030 - integrase domain-containing protein, at 458,532 to 459,413 _RS02030 DDA3937_RS02035: DDA3937_RS02035 - AlpA family transcriptional regulator, at 459,416 to 459,616 _RS02035 DDA3937_RS02040: DDA3937_RS02040 - ash family protein, at 459,613 to 460,152 _RS02040 DDA3937_RS02045: DDA3937_RS02045 - AAA family ATPase, at 460,145 to 462,190 _RS02045 Position (kb) 459 460Strain fitness (log2 ratio) -2 -1 0 1 2at 458.464 kb on - strandat 458.493 kb on - strandat 458.493 kb on - strandat 458.525 kb on + strandat 458.525 kb on + strandat 458.588 kb on + strandat 458.612 kb on + strandat 458.669 kb on - strand, within DDA3937_RS02030at 458.691 kb on - strand, within DDA3937_RS02030at 458.700 kb on + strand, within DDA3937_RS02030at 458.700 kb on + strand, within DDA3937_RS02030at 458.700 kb on + strand, within DDA3937_RS02030at 458.700 kb on + strand, within DDA3937_RS02030at 458.700 kb on + strand, within DDA3937_RS02030at 458.700 kb on + strand, within DDA3937_RS02030at 458.700 kb on + strand, within DDA3937_RS02030at 458.700 kb on + strand, within DDA3937_RS02030at 458.700 kb on + strand, within DDA3937_RS02030at 458.701 kb on - strand, within DDA3937_RS02030at 458.701 kb on - strand, within DDA3937_RS02030at 458.701 kb on - strand, within DDA3937_RS02030at 458.701 kb on - strand, within DDA3937_RS02030at 458.701 kb on - strand, within DDA3937_RS02030at 458.701 kb on - strand, within DDA3937_RS02030at 458.701 kb on - strand, within DDA3937_RS02030at 458.701 kb on - strand, within DDA3937_RS02030at 458.701 kb on - strand, within DDA3937_RS02030at 458.705 kb on - strand, within DDA3937_RS02030at 458.705 kb on - strand, within DDA3937_RS02030at 458.868 kb on + strand, within DDA3937_RS02030at 458.868 kb on + strand, within DDA3937_RS02030at 458.868 kb on + strand, within DDA3937_RS02030at 458.868 kb on + strand, within DDA3937_RS02030at 458.868 kb on + strand, within DDA3937_RS02030at 458.868 kb on + strand, within DDA3937_RS02030at 458.868 kb on + strand, within DDA3937_RS02030at 458.868 kb on + strand, within DDA3937_RS02030at 458.868 kb on + strandat 458.868 kb on + strand, within DDA3937_RS02030at 458.868 kb on + strand, within DDA3937_RS02030at 458.868 kb on + strand, within DDA3937_RS02030at 458.868 kb on + strand, within DDA3937_RS02030at 458.868 kb on + strand, within DDA3937_RS02030at 458.868 kb on + strand, within DDA3937_RS02030at 458.868 kb on + strand, within DDA3937_RS02030at 458.868 kb on + strand, within DDA3937_RS02030at 458.868 kb on + strand, within DDA3937_RS02030at 458.868 kb on + strand, within DDA3937_RS02030at 458.868 kb on + strand, within DDA3937_RS02030at 458.868 kb on + strand, within DDA3937_RS02030at 458.868 kb on + strand, within DDA3937_RS02030at 458.869 kb on - strand, within DDA3937_RS02030at 458.869 kb on - strand, within DDA3937_RS02030at 458.869 kb on - strand, within DDA3937_RS02030at 458.869 kb on - strand, within DDA3937_RS02030at 458.869 kb on - strand, within DDA3937_RS02030at 458.869 kb on - strand, within DDA3937_RS02030at 458.869 kb on - strand, within DDA3937_RS02030at 458.869 kb on - strand, within DDA3937_RS02030at 458.869 kb on - strandat 458.869 kb on - strand, within DDA3937_RS02030at 458.869 kb on - strand, within DDA3937_RS02030at 458.869 kb on - strand, within DDA3937_RS02030at 458.869 kb on - strand, within DDA3937_RS02030at 458.869 kb on - strand, within DDA3937_RS02030at 458.869 kb on - strand, within DDA3937_RS02030at 458.869 kb on - strand, within DDA3937_RS02030at 459.112 kb on + strand, within DDA3937_RS02030at 459.113 kb on - strand, within DDA3937_RS02030at 459.161 kb on + strand, within DDA3937_RS02030at 459.171 kb on + strand, within DDA3937_RS02030at 459.391 kb on - strandat 459.391 kb on - strandat 459.411 kb on + strandat 459.412 kb on - strandat 459.485 kb on + strand, within DDA3937_RS02035at 459.485 kb on + strand, within DDA3937_RS02035at 459.485 kb on + strand, within DDA3937_RS02035at 459.485 kb on + strand, within DDA3937_RS02035at 459.485 kb on + strand, within DDA3937_RS02035at 459.486 kb on - strand, within DDA3937_RS02035at 459.486 kb on - strand, within DDA3937_RS02035at 459.486 kb on - strand, within DDA3937_RS02035at 459.486 kb on - strand, within DDA3937_RS02035at 459.486 kb on - strand, within DDA3937_RS02035at 459.489 kb on - strand, within DDA3937_RS02035at 459.653 kb on - strandat 459.653 kb on - strandat 459.654 kb on + strandat 459.654 kb on + strandat 459.655 kb on - strandat 459.655 kb on - strandat 459.729 kb on - strand, within DDA3937_RS02040at 459.729 kb on - strand, within DDA3937_RS02040at 459.729 kb on - strand, within DDA3937_RS02040at 459.729 kb on - strand, within DDA3937_RS02040at 459.729 kb on - strand, within DDA3937_RS02040at 459.729 kb on - strand, within DDA3937_RS02040at 459.729 kb on - strand, within DDA3937_RS02040at 459.729 kb on - strand, within DDA3937_RS02040at 459.729 kb on - strand, within DDA3937_RS02040at 459.753 kb on - strand, within DDA3937_RS02040at 459.852 kb on + strand, within DDA3937_RS02040at 459.929 kb on + strand, within DDA3937_RS02040at 459.929 kb on + strand, within DDA3937_RS02040at 459.930 kb on - strand, within DDA3937_RS02040at 459.930 kb on - strand, within DDA3937_RS02040at 459.930 kb on - strand, within DDA3937_RS02040at 459.930 kb on - strand, within DDA3937_RS02040at 459.930 kb on - strand, within DDA3937_RS02040at 459.933 kb on + strand, within DDA3937_RS02040at 459.933 kb on + strand, within DDA3937_RS02040at 459.933 kb on + strand, within DDA3937_RS02040at 459.934 kb on - strand, within DDA3937_RS02040at 459.975 kb on + strand, within DDA3937_RS02040at 459.975 kb on + strand, within DDA3937_RS02040at 459.976 kb on - strand, within DDA3937_RS02040at 459.976 kb on - strand, within DDA3937_RS02040at 459.976 kb on - strand, within DDA3937_RS02040at 459.979 kb on + strand, within DDA3937_RS02040at 459.979 kb on + strand, within DDA3937_RS02040at 459.979 kb on + strand, within DDA3937_RS02040at 459.979 kb on + strand, within DDA3937_RS02040at 459.979 kb on + strand, within DDA3937_RS02040at 459.979 kb on + strand, within DDA3937_RS02040at 459.979 kb on + strand, within DDA3937_RS02040at 459.979 kb on + strand, within DDA3937_RS02040at 459.979 kb on + strand, within DDA3937_RS02040at 459.979 kb on + strand, within DDA3937_RS02040at 459.979 kb on + strand, within DDA3937_RS02040at 459.979 kb on + strand, within DDA3937_RS02040at 459.979 kb on + strand, within DDA3937_RS02040at 459.979 kb on + strand, within DDA3937_RS02040at 459.980 kb on - strand, within DDA3937_RS02040at 459.980 kb on - strand, within DDA3937_RS02040at 459.980 kb on - strand, within DDA3937_RS02040at 459.980 kb on - strand, within DDA3937_RS02040at 459.980 kb on - strand, within DDA3937_RS02040at 459.980 kb on - strand, within DDA3937_RS02040at 459.980 kb on - strand, within DDA3937_RS02040at 459.980 kb on - strand, within DDA3937_RS02040at 459.980 kb on - strand, within DDA3937_RS02040at 459.980 kb on - strand, within DDA3937_RS02040at 459.980 kb on - strand, within DDA3937_RS02040at 459.980 kb on - strand, within DDA3937_RS02040at 459.980 kb on - strand, within DDA3937_RS02040at 459.980 kb on - strand, within DDA3937_RS02040at 459.980 kb on - strand, within DDA3937_RS02040at 459.980 kb on - strand, within DDA3937_RS02040at 459.980 kb on - strand, within DDA3937_RS02040at 459.982 kb on - strand, within DDA3937_RS02040at 460.092 kb on - strand, within DDA3937_RS02040at 460.150 kb on + strandat 460.150 kb on + strandat 460.151 kb on - strandat 460.151 kb on - strandat 460.212 kb on + strandat 460.212 kb on + strandat 460.212 kb on + strandat 460.212 kb on + strandat 460.212 kb on + strandat 460.212 kb on + strandat 460.213 kb on - strandat 460.213 kb on - strandat 460.213 kb on - strandat 460.213 kb on - strandat 460.213 kb on - strandat 460.216 kb on + strandat 460.216 kb on + strandat 460.216 kb on + strandat 460.217 kb on - strandat 460.217 kb on - strandat 460.220 kb on + strandat 460.220 kb on + strandat 460.220 kb on + strandat 460.221 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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458,464 - +2.0
458,493 - +1.0
458,493 - -0.1
458,525 + -0.0
458,525 + +1.7
458,588 + -0.9
458,612 + -0.3
458,669 - DDA3937_RS02030 0.16 -1.8
458,691 - DDA3937_RS02030 0.18 -0.2
458,700 + DDA3937_RS02030 0.19 -0.0
458,700 + DDA3937_RS02030 0.19 +0.2
458,700 + DDA3937_RS02030 0.19 -0.5
458,700 + DDA3937_RS02030 0.19 -0.0
458,700 + DDA3937_RS02030 0.19 -0.2
458,700 + DDA3937_RS02030 0.19 -0.0
458,700 + DDA3937_RS02030 0.19 -0.0
458,700 + DDA3937_RS02030 0.19 -0.7
458,700 + DDA3937_RS02030 0.19 +0.8
458,701 - DDA3937_RS02030 0.19 -0.4
458,701 - DDA3937_RS02030 0.19 -1.2
458,701 - DDA3937_RS02030 0.19 +1.7
458,701 - DDA3937_RS02030 0.19 -0.2
458,701 - DDA3937_RS02030 0.19 -0.1
458,701 - DDA3937_RS02030 0.19 +0.2
458,701 - DDA3937_RS02030 0.19 -0.1
458,701 - DDA3937_RS02030 0.19 -0.4
458,701 - DDA3937_RS02030 0.19 -0.4
458,705 - DDA3937_RS02030 0.20 -0.4
458,705 - DDA3937_RS02030 0.20 +1.0
458,868 + DDA3937_RS02030 0.38 -0.0
458,868 + DDA3937_RS02030 0.38 -0.6
458,868 + DDA3937_RS02030 0.38 +0.3
458,868 + DDA3937_RS02030 0.38 +0.2
458,868 + DDA3937_RS02030 0.38 -0.2
458,868 + DDA3937_RS02030 0.38 -0.0
458,868 + DDA3937_RS02030 0.38 -0.4
458,868 + DDA3937_RS02030 0.38 -0.6
458,868 + -0.6
458,868 + DDA3937_RS02030 0.38 -0.6
458,868 + DDA3937_RS02030 0.38 -0.6
458,868 + DDA3937_RS02030 0.38 +0.6
458,868 + DDA3937_RS02030 0.38 +0.2
458,868 + DDA3937_RS02030 0.38 +0.1
458,868 + DDA3937_RS02030 0.38 -0.1
458,868 + DDA3937_RS02030 0.38 -0.4
458,868 + DDA3937_RS02030 0.38 +0.4
458,868 + DDA3937_RS02030 0.38 +1.3
458,868 + DDA3937_RS02030 0.38 -1.3
458,868 + DDA3937_RS02030 0.38 +1.1
458,868 + DDA3937_RS02030 0.38 -0.4
458,868 + DDA3937_RS02030 0.38 +0.6
458,869 - DDA3937_RS02030 0.38 -0.2
458,869 - DDA3937_RS02030 0.38 +0.4
458,869 - DDA3937_RS02030 0.38 +0.1
458,869 - DDA3937_RS02030 0.38 -1.4
458,869 - DDA3937_RS02030 0.38 +0.7
458,869 - DDA3937_RS02030 0.38 +0.4
458,869 - DDA3937_RS02030 0.38 -0.5
458,869 - DDA3937_RS02030 0.38 -0.0
458,869 - -0.0
458,869 - DDA3937_RS02030 0.38 +1.7
458,869 - DDA3937_RS02030 0.38 +0.5
458,869 - DDA3937_RS02030 0.38 -0.9
458,869 - DDA3937_RS02030 0.38 -0.4
458,869 - DDA3937_RS02030 0.38 -0.5
458,869 - DDA3937_RS02030 0.38 -0.3
458,869 - DDA3937_RS02030 0.38 -0.0
459,112 + DDA3937_RS02030 0.66 -0.7
459,113 - DDA3937_RS02030 0.66 +0.1
459,161 + DDA3937_RS02030 0.71 -0.3
459,171 + DDA3937_RS02030 0.72 +0.0
459,391 - -1.2
459,391 - -0.4
459,411 + -0.3
459,412 - +0.2
459,485 + DDA3937_RS02035 0.34 +0.2
459,485 + DDA3937_RS02035 0.34 +0.8
459,485 + DDA3937_RS02035 0.34 +1.0
459,485 + DDA3937_RS02035 0.34 +0.8
459,485 + DDA3937_RS02035 0.34 -0.4
459,486 - DDA3937_RS02035 0.35 -1.5
459,486 - DDA3937_RS02035 0.35 -0.3
459,486 - DDA3937_RS02035 0.35 +0.5
459,486 - DDA3937_RS02035 0.35 -0.0
459,486 - DDA3937_RS02035 0.35 +0.1
459,489 - DDA3937_RS02035 0.36 +0.2
459,653 - -1.9
459,653 - +0.8
459,654 + +1.2
459,654 + -0.8
459,655 - -0.4
459,655 - +0.1
459,729 - DDA3937_RS02040 0.21 +0.6
459,729 - DDA3937_RS02040 0.21 -1.6
459,729 - DDA3937_RS02040 0.21 -0.6
459,729 - DDA3937_RS02040 0.21 +0.4
459,729 - DDA3937_RS02040 0.21 -0.9
459,729 - DDA3937_RS02040 0.21 +0.1
459,729 - DDA3937_RS02040 0.21 -0.9
459,729 - DDA3937_RS02040 0.21 -0.2
459,729 - DDA3937_RS02040 0.21 -1.0
459,753 - DDA3937_RS02040 0.26 +0.9
459,852 + DDA3937_RS02040 0.44 +0.1
459,929 + DDA3937_RS02040 0.59 +1.0
459,929 + DDA3937_RS02040 0.59 -1.7
459,930 - DDA3937_RS02040 0.59 -1.0
459,930 - DDA3937_RS02040 0.59 -1.1
459,930 - DDA3937_RS02040 0.59 -1.5
459,930 - DDA3937_RS02040 0.59 -0.4
459,930 - DDA3937_RS02040 0.59 +0.1
459,933 + DDA3937_RS02040 0.59 +0.1
459,933 + DDA3937_RS02040 0.59 -0.4
459,933 + DDA3937_RS02040 0.59 -0.3
459,934 - DDA3937_RS02040 0.59 -0.0
459,975 + DDA3937_RS02040 0.67 -1.5
459,975 + DDA3937_RS02040 0.67 -0.8
459,976 - DDA3937_RS02040 0.67 -0.3
459,976 - DDA3937_RS02040 0.67 -0.8
459,976 - DDA3937_RS02040 0.67 -1.0
459,979 + DDA3937_RS02040 0.68 -0.9
459,979 + DDA3937_RS02040 0.68 +0.3
459,979 + DDA3937_RS02040 0.68 -0.0
459,979 + DDA3937_RS02040 0.68 -1.0
459,979 + DDA3937_RS02040 0.68 +1.3
459,979 + DDA3937_RS02040 0.68 +0.2
459,979 + DDA3937_RS02040 0.68 -0.8
459,979 + DDA3937_RS02040 0.68 +0.1
459,979 + DDA3937_RS02040 0.68 +0.2
459,979 + DDA3937_RS02040 0.68 +0.1
459,979 + DDA3937_RS02040 0.68 -0.3
459,979 + DDA3937_RS02040 0.68 -0.3
459,979 + DDA3937_RS02040 0.68 -1.0
459,979 + DDA3937_RS02040 0.68 -0.3
459,980 - DDA3937_RS02040 0.68 -0.1
459,980 - DDA3937_RS02040 0.68 +0.7
459,980 - DDA3937_RS02040 0.68 +0.4
459,980 - DDA3937_RS02040 0.68 +0.8
459,980 - DDA3937_RS02040 0.68 +0.7
459,980 - DDA3937_RS02040 0.68 -1.6
459,980 - DDA3937_RS02040 0.68 -1.6
459,980 - DDA3937_RS02040 0.68 -0.8
459,980 - DDA3937_RS02040 0.68 -0.8
459,980 - DDA3937_RS02040 0.68 -1.0
459,980 - DDA3937_RS02040 0.68 -0.9
459,980 - DDA3937_RS02040 0.68 -1.8
459,980 - DDA3937_RS02040 0.68 -0.1
459,980 - DDA3937_RS02040 0.68 +0.1
459,980 - DDA3937_RS02040 0.68 -0.0
459,980 - DDA3937_RS02040 0.68 -0.4
459,980 - DDA3937_RS02040 0.68 -0.2
459,982 - DDA3937_RS02040 0.68 -0.0
460,092 - DDA3937_RS02040 0.89 -0.2
460,150 + +0.4
460,150 + +0.2
460,151 - +0.1
460,151 - +1.6
460,212 + -0.7
460,212 + +0.7
460,212 + +0.1
460,212 + -0.2
460,212 + -0.1
460,212 + +0.0
460,213 - -0.3
460,213 - -0.0
460,213 - -1.3
460,213 - +0.2
460,213 - +0.1
460,216 + +0.3
460,216 + +2.0
460,216 + -0.9
460,217 - -0.3
460,217 - -0.3
460,220 + -1.3
460,220 + +0.6
460,220 + -1.0
460,221 - -1.0

Or see this region's nucleotide sequence