Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS01970

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS01965 and DDA3937_RS01970 are separated by 141 nucleotidesDDA3937_RS01970 and DDA3937_RS22980 are separated by 80 nucleotides DDA3937_RS01965: DDA3937_RS01965 - alpha/beta fold hydrolase, at 439,460 to 440,527 _RS01965 DDA3937_RS01970: DDA3937_RS01970 - Tar ligand binding domain-containing protein, at 440,669 to 442,288 _RS01970 DDA3937_RS22980: DDA3937_RS22980 - IS3 family transposase, at 442,369 to 443,729 _RS22980 Position (kb) 440 441 442 443Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 439.672 kb on + strand, within DDA3937_RS01965at 439.692 kb on + strand, within DDA3937_RS01965at 439.693 kb on - strand, within DDA3937_RS01965at 439.719 kb on + strand, within DDA3937_RS01965at 439.720 kb on - strand, within DDA3937_RS01965at 439.765 kb on + strand, within DDA3937_RS01965at 439.765 kb on + strand, within DDA3937_RS01965at 439.766 kb on - strand, within DDA3937_RS01965at 439.822 kb on + strand, within DDA3937_RS01965at 439.835 kb on + strand, within DDA3937_RS01965at 439.835 kb on + strand, within DDA3937_RS01965at 439.836 kb on - strand, within DDA3937_RS01965at 439.836 kb on - strand, within DDA3937_RS01965at 439.836 kb on - strand, within DDA3937_RS01965at 439.836 kb on - strand, within DDA3937_RS01965at 439.836 kb on - strand, within DDA3937_RS01965at 439.837 kb on + strand, within DDA3937_RS01965at 439.837 kb on + strand, within DDA3937_RS01965at 439.837 kb on + strand, within DDA3937_RS01965at 439.837 kb on + strand, within DDA3937_RS01965at 439.837 kb on + strand, within DDA3937_RS01965at 439.837 kb on + strand, within DDA3937_RS01965at 439.837 kb on + strand, within DDA3937_RS01965at 439.837 kb on + strand, within DDA3937_RS01965at 439.838 kb on - strand, within DDA3937_RS01965at 439.838 kb on - strand, within DDA3937_RS01965at 439.838 kb on - strand, within DDA3937_RS01965at 439.841 kb on + strand, within DDA3937_RS01965at 439.841 kb on + strand, within DDA3937_RS01965at 439.841 kb on + strand, within DDA3937_RS01965at 439.842 kb on - strand, within DDA3937_RS01965at 439.842 kb on - strand, within DDA3937_RS01965at 439.842 kb on - strand, within DDA3937_RS01965at 439.842 kb on - strand, within DDA3937_RS01965at 439.894 kb on + strand, within DDA3937_RS01965at 439.895 kb on - strand, within DDA3937_RS01965at 439.939 kb on + strand, within DDA3937_RS01965at 439.939 kb on + strand, within DDA3937_RS01965at 439.940 kb on - strand, within DDA3937_RS01965at 439.940 kb on - strand, within DDA3937_RS01965at 439.940 kb on - strand, within DDA3937_RS01965at 440.090 kb on + strand, within DDA3937_RS01965at 440.090 kb on + strand, within DDA3937_RS01965at 440.091 kb on - strand, within DDA3937_RS01965at 440.091 kb on - strand, within DDA3937_RS01965at 440.091 kb on - strand, within DDA3937_RS01965at 440.134 kb on + strand, within DDA3937_RS01965at 440.134 kb on + strand, within DDA3937_RS01965at 440.135 kb on - strandat 440.135 kb on - strand, within DDA3937_RS01965at 440.156 kb on - strand, within DDA3937_RS01965at 440.166 kb on - strand, within DDA3937_RS01965at 440.254 kb on + strand, within DDA3937_RS01965at 440.255 kb on - strand, within DDA3937_RS01965at 440.255 kb on - strand, within DDA3937_RS01965at 440.258 kb on + strand, within DDA3937_RS01965at 440.258 kb on + strand, within DDA3937_RS01965at 440.258 kb on + strand, within DDA3937_RS01965at 440.258 kb on + strand, within DDA3937_RS01965at 440.258 kb on + strand, within DDA3937_RS01965at 440.258 kb on + strand, within DDA3937_RS01965at 440.283 kb on - strand, within DDA3937_RS01965at 440.354 kb on - strand, within DDA3937_RS01965at 440.431 kb on + strandat 440.431 kb on + strandat 440.431 kb on + strandat 440.432 kb on - strandat 440.482 kb on + strandat 440.521 kb on + strandat 440.521 kb on + strandat 440.521 kb on + strandat 440.521 kb on + strandat 440.521 kb on + strandat 440.521 kb on + strandat 440.521 kb on + strandat 440.521 kb on + strandat 440.522 kb on - strandat 440.590 kb on + strandat 440.591 kb on - strandat 440.591 kb on - strandat 440.617 kb on + strandat 440.618 kb on - strandat 440.645 kb on + strandat 440.645 kb on + strandat 440.646 kb on - strandat 440.649 kb on - strandat 440.668 kb on + strandat 440.669 kb on - strandat 440.669 kb on - strandat 440.704 kb on + strandat 440.705 kb on - strandat 440.705 kb on - strandat 440.707 kb on + strandat 440.707 kb on + strandat 440.707 kb on + strandat 440.708 kb on - strandat 440.708 kb on - strandat 440.708 kb on - strandat 440.708 kb on - strandat 440.779 kb on + strandat 440.779 kb on + strandat 440.780 kb on - strandat 440.780 kb on - strandat 440.871 kb on + strand, within DDA3937_RS01970at 440.879 kb on + strand, within DDA3937_RS01970at 440.879 kb on + strand, within DDA3937_RS01970at 440.879 kb on + strand, within DDA3937_RS01970at 440.987 kb on + strand, within DDA3937_RS01970at 440.987 kb on + strand, within DDA3937_RS01970at 440.988 kb on - strand, within DDA3937_RS01970at 441.140 kb on + strand, within DDA3937_RS01970at 441.140 kb on + strand, within DDA3937_RS01970at 441.141 kb on - strand, within DDA3937_RS01970at 441.179 kb on + strand, within DDA3937_RS01970at 441.179 kb on + strand, within DDA3937_RS01970at 441.180 kb on - strand, within DDA3937_RS01970at 441.180 kb on - strand, within DDA3937_RS01970at 441.180 kb on - strand, within DDA3937_RS01970at 441.180 kb on - strand, within DDA3937_RS01970at 441.180 kb on - strand, within DDA3937_RS01970at 441.206 kb on + strand, within DDA3937_RS01970at 441.206 kb on + strand, within DDA3937_RS01970at 441.207 kb on - strand, within DDA3937_RS01970at 441.207 kb on - strand, within DDA3937_RS01970at 441.229 kb on + strand, within DDA3937_RS01970at 441.235 kb on + strand, within DDA3937_RS01970at 441.236 kb on - strand, within DDA3937_RS01970at 441.236 kb on - strand, within DDA3937_RS01970at 441.236 kb on - strand, within DDA3937_RS01970at 441.299 kb on - strand, within DDA3937_RS01970at 441.345 kb on + strand, within DDA3937_RS01970at 441.346 kb on - strand, within DDA3937_RS01970at 441.346 kb on - strand, within DDA3937_RS01970at 441.346 kb on - strand, within DDA3937_RS01970at 441.436 kb on + strand, within DDA3937_RS01970at 441.436 kb on + strand, within DDA3937_RS01970at 441.436 kb on + strand, within DDA3937_RS01970at 441.436 kb on + strand, within DDA3937_RS01970at 441.436 kb on + strand, within DDA3937_RS01970at 441.437 kb on - strand, within DDA3937_RS01970at 441.437 kb on - strand, within DDA3937_RS01970at 441.437 kb on - strandat 441.437 kb on - strand, within DDA3937_RS01970at 441.437 kb on - strand, within DDA3937_RS01970at 441.437 kb on - strand, within DDA3937_RS01970at 441.437 kb on - strand, within DDA3937_RS01970at 441.457 kb on + strand, within DDA3937_RS01970at 441.457 kb on + strand, within DDA3937_RS01970at 441.458 kb on - strand, within DDA3937_RS01970at 441.527 kb on - strand, within DDA3937_RS01970at 441.586 kb on + strand, within DDA3937_RS01970at 441.586 kb on + strand, within DDA3937_RS01970at 441.709 kb on + strand, within DDA3937_RS01970at 441.722 kb on - strand, within DDA3937_RS01970at 441.929 kb on - strand, within DDA3937_RS01970at 442.039 kb on + strand, within DDA3937_RS01970at 442.039 kb on + strand, within DDA3937_RS01970at 442.039 kb on + strand, within DDA3937_RS01970at 442.039 kb on + strand, within DDA3937_RS01970at 442.039 kb on + strand, within DDA3937_RS01970at 442.039 kb on + strand, within DDA3937_RS01970at 442.039 kb on + strand, within DDA3937_RS01970at 442.040 kb on - strand, within DDA3937_RS01970at 442.040 kb on - strand, within DDA3937_RS01970at 442.040 kb on - strand, within DDA3937_RS01970at 442.069 kb on + strand, within DDA3937_RS01970at 442.069 kb on + strand, within DDA3937_RS01970at 442.081 kb on + strand, within DDA3937_RS01970at 442.081 kb on + strand, within DDA3937_RS01970at 442.081 kb on + strand, within DDA3937_RS01970at 442.081 kb on + strandat 442.082 kb on - strand, within DDA3937_RS01970at 442.082 kb on - strand, within DDA3937_RS01970at 442.082 kb on - strand, within DDA3937_RS01970at 442.293 kb on + strandat 442.293 kb on + strandat 442.294 kb on - strandat 442.294 kb on - strandat 442.294 kb on - strandat 442.297 kb on + strandat 442.297 kb on + strandat 442.297 kb on + strandat 442.297 kb on + strandat 442.298 kb on - strandat 442.298 kb on - strandat 442.304 kb on + strandat 442.304 kb on + strandat 442.305 kb on - strandat 442.310 kb on + strandat 442.310 kb on + strandat 442.310 kb on + strandat 442.310 kb on + strandat 442.311 kb on - strandat 442.311 kb on - strandat 442.311 kb on - strandat 442.311 kb on - strandat 442.311 kb on - strandat 442.318 kb on + strandat 442.774 kb on - strand, within DDA3937_RS22980at 442.890 kb on + strand, within DDA3937_RS22980at 442.989 kb on + strand, within DDA3937_RS22980

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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439,672 + DDA3937_RS01965 0.20 -0.6
439,692 + DDA3937_RS01965 0.22 -1.0
439,693 - DDA3937_RS01965 0.22 -0.5
439,719 + DDA3937_RS01965 0.24 +1.1
439,720 - DDA3937_RS01965 0.24 -0.3
439,765 + DDA3937_RS01965 0.29 -0.2
439,765 + DDA3937_RS01965 0.29 -0.4
439,766 - DDA3937_RS01965 0.29 -0.6
439,822 + DDA3937_RS01965 0.34 +1.0
439,835 + DDA3937_RS01965 0.35 +0.2
439,835 + DDA3937_RS01965 0.35 -0.2
439,836 - DDA3937_RS01965 0.35 -0.5
439,836 - DDA3937_RS01965 0.35 -0.6
439,836 - DDA3937_RS01965 0.35 -0.2
439,836 - DDA3937_RS01965 0.35 -0.4
439,836 - DDA3937_RS01965 0.35 -0.3
439,837 + DDA3937_RS01965 0.35 +0.2
439,837 + DDA3937_RS01965 0.35 -0.6
439,837 + DDA3937_RS01965 0.35 +0.2
439,837 + DDA3937_RS01965 0.35 +0.5
439,837 + DDA3937_RS01965 0.35 +0.6
439,837 + DDA3937_RS01965 0.35 +0.5
439,837 + DDA3937_RS01965 0.35 -0.6
439,837 + DDA3937_RS01965 0.35 +0.4
439,838 - DDA3937_RS01965 0.35 -0.3
439,838 - DDA3937_RS01965 0.35 +0.7
439,838 - DDA3937_RS01965 0.35 -1.5
439,841 + DDA3937_RS01965 0.36 -0.9
439,841 + DDA3937_RS01965 0.36 -0.1
439,841 + DDA3937_RS01965 0.36 +0.8
439,842 - DDA3937_RS01965 0.36 +0.2
439,842 - DDA3937_RS01965 0.36 +0.3
439,842 - DDA3937_RS01965 0.36 +1.4
439,842 - DDA3937_RS01965 0.36 -0.6
439,894 + DDA3937_RS01965 0.41 -0.3
439,895 - DDA3937_RS01965 0.41 +1.8
439,939 + DDA3937_RS01965 0.45 +0.2
439,939 + DDA3937_RS01965 0.45 +0.4
439,940 - DDA3937_RS01965 0.45 -0.4
439,940 - DDA3937_RS01965 0.45 -1.0
439,940 - DDA3937_RS01965 0.45 -2.2
440,090 + DDA3937_RS01965 0.59 -0.0
440,090 + DDA3937_RS01965 0.59 +0.3
440,091 - DDA3937_RS01965 0.59 +1.0
440,091 - DDA3937_RS01965 0.59 -0.4
440,091 - DDA3937_RS01965 0.59 -0.7
440,134 + DDA3937_RS01965 0.63 -0.1
440,134 + DDA3937_RS01965 0.63 +0.3
440,135 - -1.6
440,135 - DDA3937_RS01965 0.63 -0.2
440,156 - DDA3937_RS01965 0.65 -2.4
440,166 - DDA3937_RS01965 0.66 -1.0
440,254 + DDA3937_RS01965 0.74 +0.3
440,255 - DDA3937_RS01965 0.74 -0.3
440,255 - DDA3937_RS01965 0.74 +0.0
440,258 + DDA3937_RS01965 0.75 -0.1
440,258 + DDA3937_RS01965 0.75 -0.5
440,258 + DDA3937_RS01965 0.75 -1.7
440,258 + DDA3937_RS01965 0.75 -1.5
440,258 + DDA3937_RS01965 0.75 +0.6
440,258 + DDA3937_RS01965 0.75 -0.1
440,283 - DDA3937_RS01965 0.77 +0.4
440,354 - DDA3937_RS01965 0.84 +0.1
440,431 + -0.9
440,431 + -0.2
440,431 + -0.3
440,432 - -1.6
440,482 + -0.6
440,521 + -0.0
440,521 + -0.0
440,521 + +0.8
440,521 + +0.3
440,521 + +0.3
440,521 + +0.1
440,521 + +0.2
440,521 + -0.2
440,522 - -1.1
440,590 + -0.8
440,591 - -1.0
440,591 - -0.1
440,617 + +0.4
440,618 - -0.0
440,645 + +1.0
440,645 + +0.4
440,646 - +0.6
440,649 - -0.2
440,668 + -0.0
440,669 - -0.7
440,669 - +0.2
440,704 + +1.0
440,705 - +0.1
440,705 - -0.7
440,707 + -0.7
440,707 + -0.6
440,707 + +1.0
440,708 - -0.2
440,708 - +0.3
440,708 - -0.2
440,708 - -0.3
440,779 + -0.5
440,779 + +0.4
440,780 - -1.1
440,780 - +0.4
440,871 + DDA3937_RS01970 0.12 +0.6
440,879 + DDA3937_RS01970 0.13 +1.0
440,879 + DDA3937_RS01970 0.13 -0.7
440,879 + DDA3937_RS01970 0.13 -0.6
440,987 + DDA3937_RS01970 0.20 -0.1
440,987 + DDA3937_RS01970 0.20 +0.7
440,988 - DDA3937_RS01970 0.20 -0.2
441,140 + DDA3937_RS01970 0.29 +0.4
441,140 + DDA3937_RS01970 0.29 -1.2
441,141 - DDA3937_RS01970 0.29 +0.2
441,179 + DDA3937_RS01970 0.31 -0.0
441,179 + DDA3937_RS01970 0.31 -0.1
441,180 - DDA3937_RS01970 0.32 -0.3
441,180 - DDA3937_RS01970 0.32 -1.4
441,180 - DDA3937_RS01970 0.32 -0.0
441,180 - DDA3937_RS01970 0.32 +2.4
441,180 - DDA3937_RS01970 0.32 +2.6
441,206 + DDA3937_RS01970 0.33 -0.4
441,206 + DDA3937_RS01970 0.33 +0.7
441,207 - DDA3937_RS01970 0.33 +0.5
441,207 - DDA3937_RS01970 0.33 +1.0
441,229 + DDA3937_RS01970 0.35 +0.6
441,235 + DDA3937_RS01970 0.35 +0.5
441,236 - DDA3937_RS01970 0.35 +0.2
441,236 - DDA3937_RS01970 0.35 -0.1
441,236 - DDA3937_RS01970 0.35 +1.0
441,299 - DDA3937_RS01970 0.39 +0.6
441,345 + DDA3937_RS01970 0.42 +0.3
441,346 - DDA3937_RS01970 0.42 +1.5
441,346 - DDA3937_RS01970 0.42 -0.4
441,346 - DDA3937_RS01970 0.42 +1.0
441,436 + DDA3937_RS01970 0.47 +0.6
441,436 + DDA3937_RS01970 0.47 +2.1
441,436 + DDA3937_RS01970 0.47 -0.1
441,436 + DDA3937_RS01970 0.47 -0.0
441,436 + DDA3937_RS01970 0.47 -0.3
441,437 - DDA3937_RS01970 0.47 -0.6
441,437 - DDA3937_RS01970 0.47 +0.4
441,437 - +1.0
441,437 - DDA3937_RS01970 0.47 -1.3
441,437 - DDA3937_RS01970 0.47 +0.4
441,437 - DDA3937_RS01970 0.47 -0.3
441,437 - DDA3937_RS01970 0.47 +0.5
441,457 + DDA3937_RS01970 0.49 +1.6
441,457 + DDA3937_RS01970 0.49 +0.5
441,458 - DDA3937_RS01970 0.49 +0.4
441,527 - DDA3937_RS01970 0.53 +0.2
441,586 + DDA3937_RS01970 0.57 +1.0
441,586 + DDA3937_RS01970 0.57 -0.0
441,709 + DDA3937_RS01970 0.64 -0.6
441,722 - DDA3937_RS01970 0.65 +2.1
441,929 - DDA3937_RS01970 0.78 -0.6
442,039 + DDA3937_RS01970 0.85 -1.2
442,039 + DDA3937_RS01970 0.85 +0.2
442,039 + DDA3937_RS01970 0.85 -1.8
442,039 + DDA3937_RS01970 0.85 +0.1
442,039 + DDA3937_RS01970 0.85 +0.0
442,039 + DDA3937_RS01970 0.85 -2.8
442,039 + DDA3937_RS01970 0.85 -0.0
442,040 - DDA3937_RS01970 0.85 +0.7
442,040 - DDA3937_RS01970 0.85 +0.3
442,040 - DDA3937_RS01970 0.85 -0.0
442,069 + DDA3937_RS01970 0.86 +1.0
442,069 + DDA3937_RS01970 0.86 -0.1
442,081 + DDA3937_RS01970 0.87 -1.4
442,081 + DDA3937_RS01970 0.87 +0.9
442,081 + DDA3937_RS01970 0.87 -0.2
442,081 + +2.6
442,082 - DDA3937_RS01970 0.87 -0.3
442,082 - DDA3937_RS01970 0.87 -0.3
442,082 - DDA3937_RS01970 0.87 +0.4
442,293 + +0.1
442,293 + -0.0
442,294 - -0.6
442,294 - -0.0
442,294 - -0.8
442,297 + +0.5
442,297 + +0.7
442,297 + -0.2
442,297 + -0.6
442,298 - -0.0
442,298 - +0.2
442,304 + +0.1
442,304 + +0.5
442,305 - +0.7
442,310 + -0.2
442,310 + -0.3
442,310 + -0.3
442,310 + +0.1
442,311 - +0.3
442,311 - -1.6
442,311 - -0.6
442,311 - -1.1
442,311 - +0.6
442,318 + -0.6
442,774 - DDA3937_RS22980 0.30 -0.3
442,890 + DDA3937_RS22980 0.38 -0.4
442,989 + DDA3937_RS22980 0.46 -0.0

Or see this region's nucleotide sequence