Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS23395 and DDA3937_RS01915 are separated by 210 nucleotides DDA3937_RS01915 and DDA3937_RS01920 are separated by 112 nucleotides DDA3937_RS01920 and DDA3937_RS01925 are separated by 16 nucleotides
DDA3937_RS23395: DDA3937_RS23395 - hypothetical protein, at 430,044 to 430,799
_RS23395
DDA3937_RS01915: DDA3937_RS01915 - 2-iminobutanoate/2-iminopropanoate deaminase, at 431,010 to 431,396
_RS01915
DDA3937_RS01920: DDA3937_RS01920 - aspartate carbamoyltransferase regulatory subunit, at 431,509 to 431,973
_RS01920
DDA3937_RS01925: DDA3937_RS01925 - aspartate carbamoyltransferase, at 431,990 to 432,925
_RS01925
Position (kb) 431
432 Strain fitness (log2 ratio) -2
-1
0
1
2 at 430.023 kb on + strand at 430.024 kb on - strand at 430.024 kb on - strand at 430.024 kb on - strand at 430.031 kb on + strand at 430.031 kb on + strand at 430.032 kb on - strand at 430.147 kb on - strand, within DDA3937_RS23395 at 430.219 kb on + strand, within DDA3937_RS23395 at 430.302 kb on + strand, within DDA3937_RS23395 at 430.302 kb on + strand, within DDA3937_RS23395 at 430.320 kb on + strand, within DDA3937_RS23395 at 430.327 kb on + strand, within DDA3937_RS23395 at 430.370 kb on - strand, within DDA3937_RS23395 at 430.370 kb on - strand, within DDA3937_RS23395 at 430.377 kb on + strand, within DDA3937_RS23395 at 430.378 kb on - strand, within DDA3937_RS23395 at 430.445 kb on - strand, within DDA3937_RS23395 at 430.520 kb on - strand, within DDA3937_RS23395 at 430.534 kb on - strand, within DDA3937_RS23395 at 430.573 kb on - strand, within DDA3937_RS23395 at 430.577 kb on + strand, within DDA3937_RS23395 at 430.577 kb on + strand, within DDA3937_RS23395 at 430.612 kb on + strand, within DDA3937_RS23395 at 430.613 kb on - strand, within DDA3937_RS23395 at 430.613 kb on - strand, within DDA3937_RS23395 at 430.616 kb on - strand, within DDA3937_RS23395 at 430.616 kb on - strand, within DDA3937_RS23395 at 430.616 kb on - strand, within DDA3937_RS23395 at 430.625 kb on + strand, within DDA3937_RS23395 at 430.626 kb on - strand, within DDA3937_RS23395 at 430.639 kb on - strand, within DDA3937_RS23395 at 430.708 kb on + strand, within DDA3937_RS23395 at 430.708 kb on + strand, within DDA3937_RS23395 at 430.710 kb on + strand, within DDA3937_RS23395 at 430.711 kb on - strand, within DDA3937_RS23395 at 430.716 kb on - strand, within DDA3937_RS23395 at 430.719 kb on - strand, within DDA3937_RS23395 at 430.723 kb on - strand, within DDA3937_RS23395 at 430.723 kb on - strand, within DDA3937_RS23395 at 430.730 kb on + strand at 430.731 kb on - strand at 430.741 kb on + strand at 430.742 kb on - strand at 430.774 kb on + strand at 430.774 kb on + strand at 430.798 kb on - strand at 430.801 kb on + strand at 430.801 kb on + strand at 430.801 kb on + strand at 430.802 kb on - strand at 430.802 kb on - strand at 430.802 kb on - strand at 430.805 kb on + strand at 430.805 kb on + strand at 430.880 kb on - strand at 430.900 kb on + strand at 430.900 kb on + strand at 430.901 kb on - strand at 430.905 kb on + strand at 430.937 kb on - strand at 430.937 kb on - strand at 430.954 kb on + strand at 431.125 kb on + strand, within DDA3937_RS01915 at 431.126 kb on - strand, within DDA3937_RS01915 at 431.181 kb on - strand, within DDA3937_RS01915 at 431.347 kb on + strand, within DDA3937_RS01915 at 431.378 kb on + strand at 431.396 kb on + strand at 431.397 kb on - strand at 431.397 kb on - strand at 431.397 kb on - strand at 431.410 kb on + strand at 431.410 kb on + strand at 431.410 kb on + strand at 431.410 kb on + strand at 431.410 kb on + strand at 431.411 kb on - strand at 431.411 kb on - strand at 431.411 kb on - strand at 431.411 kb on - strand at 431.411 kb on - strand at 431.439 kb on - strand at 431.513 kb on + strand at 431.513 kb on + strand at 431.513 kb on + strand at 431.513 kb on + strand at 431.513 kb on + strand at 431.513 kb on + strand at 431.514 kb on - strand at 431.514 kb on - strand at 431.514 kb on - strand at 431.514 kb on - strand at 431.514 kb on - strand at 431.514 kb on - strand at 431.555 kb on + strand at 431.555 kb on + strand at 431.556 kb on - strand, within DDA3937_RS01920 at 431.556 kb on - strand, within DDA3937_RS01920 at 431.631 kb on + strand, within DDA3937_RS01920 at 431.632 kb on - strand, within DDA3937_RS01920 at 431.709 kb on - strand, within DDA3937_RS01920 at 431.709 kb on - strand, within DDA3937_RS01920 at 431.709 kb on - strand, within DDA3937_RS01920 at 431.709 kb on - strand, within DDA3937_RS01920 at 431.744 kb on + strand, within DDA3937_RS01920 at 431.744 kb on + strand, within DDA3937_RS01920 at 431.744 kb on + strand, within DDA3937_RS01920 at 431.744 kb on + strand, within DDA3937_RS01920 at 431.745 kb on - strand, within DDA3937_RS01920 at 431.745 kb on - strand, within DDA3937_RS01920 at 431.745 kb on - strand, within DDA3937_RS01920 at 431.785 kb on - strand, within DDA3937_RS01920 at 431.808 kb on + strand, within DDA3937_RS01920 at 431.887 kb on + strand, within DDA3937_RS01920 at 431.887 kb on + strand, within DDA3937_RS01920 at 431.913 kb on + strand, within DDA3937_RS01920 at 431.914 kb on - strand, within DDA3937_RS01920 at 431.947 kb on + strand at 431.947 kb on + strand at 431.947 kb on + strand at 431.948 kb on - strand at 431.948 kb on - strand at 431.953 kb on + strand at 431.959 kb on - strand at 431.959 kb on - strand at 431.980 kb on + strand at 431.980 kb on + strand at 431.980 kb on + strand at 431.980 kb on + strand at 431.980 kb on + strand at 431.980 kb on + strand at 431.981 kb on - strand at 431.981 kb on - strand at 431.981 kb on - strand at 431.981 kb on - strand at 431.981 kb on - strand at 432.042 kb on + strand at 432.043 kb on - strand at 432.043 kb on - strand at 432.046 kb on + strand at 432.047 kb on - strand at 432.069 kb on + strand at 432.070 kb on - strand at 432.070 kb on - strand at 432.073 kb on - strand at 432.073 kb on - strand at 432.196 kb on + strand, within DDA3937_RS01925 at 432.197 kb on - strand, within DDA3937_RS01925 at 432.197 kb on - strand, within DDA3937_RS01925 at 432.246 kb on + strand, within DDA3937_RS01925 at 432.246 kb on + strand, within DDA3937_RS01925 at 432.246 kb on + strand, within DDA3937_RS01925 at 432.246 kb on + strand, within DDA3937_RS01925 at 432.246 kb on + strand, within DDA3937_RS01925 at 432.247 kb on - strand, within DDA3937_RS01925 at 432.247 kb on - strand, within DDA3937_RS01925 at 432.253 kb on + strand, within DDA3937_RS01925 at 432.253 kb on + strand, within DDA3937_RS01925 at 432.286 kb on + strand, within DDA3937_RS01925 at 432.286 kb on + strand, within DDA3937_RS01925 at 432.287 kb on - strand, within DDA3937_RS01925 at 432.297 kb on + strand, within DDA3937_RS01925 at 432.305 kb on - strand, within DDA3937_RS01925 at 432.333 kb on + strand, within DDA3937_RS01925 at 432.333 kb on + strand, within DDA3937_RS01925 at 432.333 kb on + strand, within DDA3937_RS01925 at 432.334 kb on - strand, within DDA3937_RS01925 at 432.369 kb on + strand, within DDA3937_RS01925 at 432.369 kb on + strand, within DDA3937_RS01925 at 432.369 kb on + strand, within DDA3937_RS01925 at 432.369 kb on + strand, within DDA3937_RS01925 at 432.370 kb on - strand, within DDA3937_RS01925 at 432.370 kb on - strand, within DDA3937_RS01925 at 432.370 kb on - strand, within DDA3937_RS01925 at 432.370 kb on - strand, within DDA3937_RS01925
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 430,023 + -1.3 430,024 - -1.6 430,024 - -0.8 430,024 - -2.0 430,031 + -0.8 430,031 + -0.3 430,032 - +0.2 430,147 - DDA3937_RS23395 0.14 +0.4 430,219 + DDA3937_RS23395 0.23 +0.6 430,302 + DDA3937_RS23395 0.34 +1.1 430,302 + DDA3937_RS23395 0.34 -0.2 430,320 + DDA3937_RS23395 0.37 -0.2 430,327 + DDA3937_RS23395 0.37 -1.3 430,370 - DDA3937_RS23395 0.43 +2.0 430,370 - DDA3937_RS23395 0.43 -0.7 430,377 + DDA3937_RS23395 0.44 -0.6 430,378 - DDA3937_RS23395 0.44 +0.8 430,445 - DDA3937_RS23395 0.53 -1.2 430,520 - DDA3937_RS23395 0.63 +1.0 430,534 - DDA3937_RS23395 0.65 -0.1 430,573 - DDA3937_RS23395 0.70 +1.4 430,577 + DDA3937_RS23395 0.71 -1.2 430,577 + DDA3937_RS23395 0.71 -1.0 430,612 + DDA3937_RS23395 0.75 -0.9 430,613 - DDA3937_RS23395 0.75 +0.3 430,613 - DDA3937_RS23395 0.75 -0.1 430,616 - DDA3937_RS23395 0.76 +0.3 430,616 - DDA3937_RS23395 0.76 -1.4 430,616 - DDA3937_RS23395 0.76 -0.3 430,625 + DDA3937_RS23395 0.77 -0.8 430,626 - DDA3937_RS23395 0.77 +0.1 430,639 - DDA3937_RS23395 0.79 +1.0 430,708 + DDA3937_RS23395 0.88 +0.6 430,708 + DDA3937_RS23395 0.88 -0.4 430,710 + DDA3937_RS23395 0.88 +0.2 430,711 - DDA3937_RS23395 0.88 -0.4 430,716 - DDA3937_RS23395 0.89 -0.4 430,719 - DDA3937_RS23395 0.89 +0.7 430,723 - DDA3937_RS23395 0.90 -0.1 430,723 - DDA3937_RS23395 0.90 +0.1 430,730 + -0.6 430,731 - -0.3 430,741 + -0.4 430,742 - -0.2 430,774 + -0.0 430,774 + +0.9 430,798 - -0.3 430,801 + +0.3 430,801 + +0.3 430,801 + +0.7 430,802 - +0.6 430,802 - +1.6 430,802 - -0.9 430,805 + -0.0 430,805 + +0.6 430,880 - +0.2 430,900 + -0.4 430,900 + +0.3 430,901 - +0.2 430,905 + +0.4 430,937 - +1.0 430,937 - +0.4 430,954 + +0.7 431,125 + DDA3937_RS01915 0.30 -1.0 431,126 - DDA3937_RS01915 0.30 -1.2 431,181 - DDA3937_RS01915 0.44 -0.0 431,347 + DDA3937_RS01915 0.87 -1.3 431,378 + -1.3 431,396 + +0.6 431,397 - -1.3 431,397 - -0.4 431,397 - +0.4 431,410 + -0.9 431,410 + +0.2 431,410 + -0.3 431,410 + -0.6 431,410 + -0.6 431,411 - -0.4 431,411 - +0.1 431,411 - -0.6 431,411 - -0.6 431,411 - -0.9 431,439 - +0.4 431,513 + +2.1 431,513 + +0.1 431,513 + +0.4 431,513 + -0.0 431,513 + -0.4 431,513 + +1.0 431,514 - -2.2 431,514 - +0.1 431,514 - +0.3 431,514 - -0.8 431,514 - +0.5 431,514 - -0.2 431,555 + -1.0 431,555 + +0.6 431,556 - DDA3937_RS01920 0.10 -0.2 431,556 - DDA3937_RS01920 0.10 +0.4 431,631 + DDA3937_RS01920 0.26 -0.3 431,632 - DDA3937_RS01920 0.26 -0.2 431,709 - DDA3937_RS01920 0.43 +0.1 431,709 - DDA3937_RS01920 0.43 +0.8 431,709 - DDA3937_RS01920 0.43 -0.5 431,709 - DDA3937_RS01920 0.43 -0.3 431,744 + DDA3937_RS01920 0.51 -1.3 431,744 + DDA3937_RS01920 0.51 +0.2 431,744 + DDA3937_RS01920 0.51 +0.7 431,744 + DDA3937_RS01920 0.51 +0.5 431,745 - DDA3937_RS01920 0.51 +1.0 431,745 - DDA3937_RS01920 0.51 +0.7 431,745 - DDA3937_RS01920 0.51 -0.8 431,785 - DDA3937_RS01920 0.59 -0.6 431,808 + DDA3937_RS01920 0.64 -0.5 431,887 + DDA3937_RS01920 0.81 -0.3 431,887 + DDA3937_RS01920 0.81 -0.1 431,913 + DDA3937_RS01920 0.87 +0.4 431,914 - DDA3937_RS01920 0.87 -0.3 431,947 + -0.4 431,947 + -0.1 431,947 + +0.7 431,948 - -0.6 431,948 - -0.3 431,953 + -0.8 431,959 - +1.3 431,959 - -0.0 431,980 + -0.9 431,980 + +0.7 431,980 + -1.1 431,980 + -0.4 431,980 + +0.2 431,980 + -1.4 431,981 - -0.7 431,981 - +0.3 431,981 - -0.6 431,981 - -0.1 431,981 - +0.4 432,042 + -0.6 432,043 - -1.1 432,043 - -0.2 432,046 + -0.2 432,047 - +0.2 432,069 + -0.1 432,070 - -0.2 432,070 - -0.4 432,073 - +1.6 432,073 - -0.4 432,196 + DDA3937_RS01925 0.22 -0.2 432,197 - DDA3937_RS01925 0.22 -0.9 432,197 - DDA3937_RS01925 0.22 -0.4 432,246 + DDA3937_RS01925 0.27 +0.5 432,246 + DDA3937_RS01925 0.27 -0.6 432,246 + DDA3937_RS01925 0.27 -0.8 432,246 + DDA3937_RS01925 0.27 -0.1 432,246 + DDA3937_RS01925 0.27 +0.2 432,247 - DDA3937_RS01925 0.27 -0.3 432,247 - DDA3937_RS01925 0.27 -0.5 432,253 + DDA3937_RS01925 0.28 +0.2 432,253 + DDA3937_RS01925 0.28 -0.0 432,286 + DDA3937_RS01925 0.32 -1.0 432,286 + DDA3937_RS01925 0.32 +0.7 432,287 - DDA3937_RS01925 0.32 -0.0 432,297 + DDA3937_RS01925 0.33 -0.2 432,305 - DDA3937_RS01925 0.34 -0.2 432,333 + DDA3937_RS01925 0.37 +0.2 432,333 + DDA3937_RS01925 0.37 -0.4 432,333 + DDA3937_RS01925 0.37 -0.1 432,334 - DDA3937_RS01925 0.37 -0.0 432,369 + DDA3937_RS01925 0.40 -0.0 432,369 + DDA3937_RS01925 0.40 -1.6 432,369 + DDA3937_RS01925 0.40 +0.2 432,369 + DDA3937_RS01925 0.40 -0.2 432,370 - DDA3937_RS01925 0.41 +0.4 432,370 - DDA3937_RS01925 0.41 -0.1 432,370 - DDA3937_RS01925 0.41 +0.1 432,370 - DDA3937_RS01925 0.41 -0.2
Or see this region's nucleotide sequence