Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01800 and DDA3937_RS01805 are separated by 466 nucleotides DDA3937_RS01805 and DDA3937_RS01810 are separated by 93 nucleotides DDA3937_RS01810 and DDA3937_RS01815 are separated by 184 nucleotides
DDA3937_RS01800: DDA3937_RS01800 - alcohol dehydrogenase, at 399,627 to 400,790
_RS01800
DDA3937_RS01805: DDA3937_RS01805 - AraC family transcriptional regulator, at 401,257 to 402,168
_RS01805
DDA3937_RS01810: DDA3937_RS01810 - DedA family protein, at 402,262 to 402,921
_RS01810
DDA3937_RS01815: DDA3937_RS01815 - cystathionine beta-lyase, at 403,106 to 404,299
_RS01815
Position (kb) 401
402
403 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 400.462 kb on + strand, within DDA3937_RS01800 at 400.463 kb on - strand, within DDA3937_RS01800 at 400.463 kb on - strand at 400.614 kb on + strand, within DDA3937_RS01800 at 400.614 kb on + strand, within DDA3937_RS01800 at 400.614 kb on + strand, within DDA3937_RS01800 at 400.614 kb on + strand, within DDA3937_RS01800 at 400.614 kb on + strand, within DDA3937_RS01800 at 400.615 kb on - strand, within DDA3937_RS01800 at 400.684 kb on + strand at 400.684 kb on + strand at 400.684 kb on + strand at 400.684 kb on + strand at 400.684 kb on + strand at 400.685 kb on - strand at 400.685 kb on - strand at 400.685 kb on - strand at 400.685 kb on - strand at 400.769 kb on + strand at 400.796 kb on + strand at 400.796 kb on + strand at 400.796 kb on + strand at 400.796 kb on + strand at 400.797 kb on - strand at 400.797 kb on - strand at 400.797 kb on - strand at 400.797 kb on - strand at 400.807 kb on + strand at 400.807 kb on + strand at 400.807 kb on + strand at 400.808 kb on - strand at 400.808 kb on - strand at 400.808 kb on - strand at 400.808 kb on - strand at 400.840 kb on - strand at 400.840 kb on - strand at 400.863 kb on + strand at 400.863 kb on + strand at 400.864 kb on - strand at 400.866 kb on + strand at 400.866 kb on + strand at 400.866 kb on + strand at 400.866 kb on + strand at 400.867 kb on - strand at 400.872 kb on + strand at 400.872 kb on + strand at 400.872 kb on + strand at 400.872 kb on + strand at 400.872 kb on + strand at 400.873 kb on - strand at 400.873 kb on - strand at 400.873 kb on - strand at 400.873 kb on - strand at 400.873 kb on - strand at 400.873 kb on - strand at 400.873 kb on - strand at 400.879 kb on - strand at 400.918 kb on + strand at 400.918 kb on + strand at 400.919 kb on - strand at 400.955 kb on + strand at 400.956 kb on - strand at 401.001 kb on + strand at 401.066 kb on - strand at 401.080 kb on + strand at 401.080 kb on + strand at 401.080 kb on + strand at 401.081 kb on - strand at 401.081 kb on - strand at 401.081 kb on - strand at 401.081 kb on - strand at 401.081 kb on - strand at 401.082 kb on + strand at 401.082 kb on + strand at 401.082 kb on + strand at 401.119 kb on - strand at 401.166 kb on + strand at 401.167 kb on - strand at 401.207 kb on + strand at 401.216 kb on + strand at 401.217 kb on - strand at 401.217 kb on - strand at 401.217 kb on - strand at 401.217 kb on - strand at 401.218 kb on + strand at 401.218 kb on + strand at 401.218 kb on + strand at 401.218 kb on + strand at 401.218 kb on + strand at 401.218 kb on + strand at 401.218 kb on + strand at 401.218 kb on + strand at 401.218 kb on + strand at 401.218 kb on + strand at 401.218 kb on + strand at 401.218 kb on + strand at 401.218 kb on + strand at 401.218 kb on + strand at 401.218 kb on + strand at 401.218 kb on + strand at 401.218 kb on + strand at 401.218 kb on + strand at 401.218 kb on + strand at 401.218 kb on + strand at 401.218 kb on + strand at 401.218 kb on + strand at 401.218 kb on + strand at 401.218 kb on + strand at 401.218 kb on + strand at 401.218 kb on + strand at 401.218 kb on + strand at 401.218 kb on + strand at 401.218 kb on + strand at 401.218 kb on + strand at 401.218 kb on + strand at 401.218 kb on + strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.219 kb on - strand at 401.240 kb on + strand at 401.243 kb on + strand at 401.257 kb on - strand at 401.305 kb on + strand at 401.305 kb on + strand at 401.305 kb on + strand at 401.305 kb on + strand at 401.306 kb on - strand at 401.306 kb on - strand at 401.306 kb on - strand at 401.359 kb on + strand, within DDA3937_RS01805 at 401.359 kb on + strand, within DDA3937_RS01805 at 401.360 kb on - strand, within DDA3937_RS01805 at 401.360 kb on - strand, within DDA3937_RS01805 at 401.360 kb on - strand, within DDA3937_RS01805 at 401.360 kb on - strand, within DDA3937_RS01805 at 401.395 kb on + strand, within DDA3937_RS01805 at 401.395 kb on + strand, within DDA3937_RS01805 at 401.395 kb on + strand, within DDA3937_RS01805 at 401.395 kb on + strand, within DDA3937_RS01805 at 401.395 kb on + strand, within DDA3937_RS01805 at 401.395 kb on + strand, within DDA3937_RS01805 at 401.396 kb on - strand, within DDA3937_RS01805 at 401.396 kb on - strand, within DDA3937_RS01805 at 401.440 kb on + strand, within DDA3937_RS01805 at 401.441 kb on - strand, within DDA3937_RS01805 at 401.441 kb on - strand, within DDA3937_RS01805 at 401.479 kb on + strand, within DDA3937_RS01805 at 401.479 kb on + strand, within DDA3937_RS01805 at 401.479 kb on + strand, within DDA3937_RS01805 at 401.479 kb on + strand, within DDA3937_RS01805 at 401.479 kb on + strand, within DDA3937_RS01805 at 401.479 kb on + strand, within DDA3937_RS01805 at 401.479 kb on + strand, within DDA3937_RS01805 at 401.479 kb on + strand, within DDA3937_RS01805 at 401.479 kb on + strand, within DDA3937_RS01805 at 401.480 kb on - strand, within DDA3937_RS01805 at 401.480 kb on - strand, within DDA3937_RS01805 at 401.569 kb on - strand, within DDA3937_RS01805 at 401.764 kb on + strand, within DDA3937_RS01805 at 401.764 kb on + strand, within DDA3937_RS01805 at 401.765 kb on - strand, within DDA3937_RS01805 at 401.765 kb on - strand, within DDA3937_RS01805 at 401.765 kb on - strand, within DDA3937_RS01805 at 401.854 kb on + strand, within DDA3937_RS01805 at 401.854 kb on + strand, within DDA3937_RS01805 at 401.854 kb on + strand, within DDA3937_RS01805 at 401.857 kb on - strand, within DDA3937_RS01805 at 401.866 kb on + strand, within DDA3937_RS01805 at 401.866 kb on + strand, within DDA3937_RS01805 at 401.866 kb on + strand, within DDA3937_RS01805 at 401.866 kb on + strand, within DDA3937_RS01805 at 401.869 kb on + strand, within DDA3937_RS01805 at 401.869 kb on + strand, within DDA3937_RS01805 at 401.870 kb on - strand, within DDA3937_RS01805 at 401.870 kb on - strand, within DDA3937_RS01805 at 401.870 kb on - strand, within DDA3937_RS01805 at 401.974 kb on + strand, within DDA3937_RS01805 at 401.974 kb on + strand, within DDA3937_RS01805 at 402.152 kb on + strand at 402.153 kb on - strand at 402.153 kb on - strand at 402.153 kb on - strand at 402.153 kb on - strand at 402.155 kb on + strand at 402.155 kb on + strand at 402.155 kb on + strand at 402.155 kb on + strand at 402.155 kb on + strand at 402.155 kb on + strand at 402.155 kb on + strand at 402.155 kb on + strand at 402.156 kb on - strand at 402.156 kb on - strand at 402.167 kb on - strand at 402.167 kb on - strand at 402.172 kb on + strand at 402.172 kb on + strand at 402.173 kb on - strand at 402.173 kb on - strand at 402.175 kb on + strand at 402.176 kb on - strand at 402.176 kb on - strand at 402.283 kb on - strand at 402.372 kb on - strand, within DDA3937_RS01810 at 402.372 kb on - strand, within DDA3937_RS01810 at 402.391 kb on - strand, within DDA3937_RS01810 at 402.414 kb on + strand, within DDA3937_RS01810 at 402.477 kb on + strand, within DDA3937_RS01810 at 402.477 kb on + strand, within DDA3937_RS01810 at 402.477 kb on + strand, within DDA3937_RS01810 at 402.477 kb on + strand, within DDA3937_RS01810 at 402.593 kb on + strand, within DDA3937_RS01810 at 402.613 kb on + strand, within DDA3937_RS01810 at 402.614 kb on - strand, within DDA3937_RS01810 at 402.636 kb on + strand, within DDA3937_RS01810 at 402.662 kb on + strand, within DDA3937_RS01810 at 402.663 kb on - strand, within DDA3937_RS01810 at 402.663 kb on - strand, within DDA3937_RS01810 at 402.663 kb on - strand, within DDA3937_RS01810 at 402.761 kb on - strand, within DDA3937_RS01810 at 402.836 kb on + strand, within DDA3937_RS01810 at 402.836 kb on + strand, within DDA3937_RS01810 at 402.836 kb on + strand, within DDA3937_RS01810 at 402.837 kb on - strand, within DDA3937_RS01810 at 402.837 kb on - strand, within DDA3937_RS01810 at 402.837 kb on - strand, within DDA3937_RS01810 at 402.837 kb on - strand, within DDA3937_RS01810 at 402.943 kb on + strand at 402.943 kb on + strand at 402.943 kb on + strand at 402.944 kb on - strand at 402.944 kb on - strand at 402.944 kb on - strand at 402.944 kb on - strand at 402.945 kb on + strand at 402.945 kb on + strand at 402.964 kb on - strand at 402.964 kb on - strand at 402.967 kb on + strand at 402.967 kb on + strand at 402.967 kb on + strand at 402.968 kb on - strand at 403.008 kb on + strand at 403.018 kb on - strand at 403.023 kb on + strand at 403.023 kb on + strand at 403.023 kb on + strand at 403.024 kb on - strand at 403.024 kb on - strand at 403.024 kb on - strand at 403.024 kb on - strand at 403.024 kb on - strand at 403.024 kb on - strand at 403.039 kb on - strand at 403.050 kb on + strand at 403.050 kb on + strand at 403.050 kb on + strand at 403.050 kb on + strand at 403.051 kb on - strand at 403.052 kb on + strand at 403.052 kb on + strand at 403.052 kb on + strand at 403.052 kb on + strand at 403.052 kb on + strand at 403.053 kb on - strand at 403.053 kb on - strand at 403.053 kb on - strand at 403.053 kb on - strand at 403.053 kb on - strand at 403.053 kb on - strand at 403.053 kb on - strand at 403.053 kb on - strand at 403.053 kb on - strand at 403.053 kb on - strand at 403.068 kb on + strand at 403.068 kb on + strand at 403.068 kb on + strand at 403.068 kb on + strand at 403.068 kb on + strand at 403.069 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 400,462 + DDA3937_RS01800 0.72 +0.3 400,463 - DDA3937_RS01800 0.72 +0.0 400,463 - +1.0 400,614 + DDA3937_RS01800 0.85 -0.1 400,614 + DDA3937_RS01800 0.85 +0.2 400,614 + DDA3937_RS01800 0.85 +1.1 400,614 + DDA3937_RS01800 0.85 -0.1 400,614 + DDA3937_RS01800 0.85 -0.8 400,615 - DDA3937_RS01800 0.85 +0.4 400,684 + -0.1 400,684 + +0.0 400,684 + -1.3 400,684 + +0.9 400,684 + +0.2 400,685 - -2.2 400,685 - +0.3 400,685 - -0.6 400,685 - +0.2 400,769 + -1.0 400,796 + +0.2 400,796 + -2.4 400,796 + +0.1 400,796 + +3.6 400,797 - -0.2 400,797 - +1.2 400,797 - +0.3 400,797 - +0.4 400,807 + -0.4 400,807 + -1.0 400,807 + -1.8 400,808 - -0.8 400,808 - +2.0 400,808 - -0.1 400,808 - -0.4 400,840 - -0.3 400,840 - +1.1 400,863 + +0.1 400,863 + -0.4 400,864 - -0.5 400,866 + -0.3 400,866 + -1.3 400,866 + +0.5 400,866 + +0.1 400,867 - -1.0 400,872 + -0.3 400,872 + +0.2 400,872 + -0.3 400,872 + -0.9 400,872 + -1.7 400,873 - +0.7 400,873 - -0.6 400,873 - +0.4 400,873 - -0.6 400,873 - +0.2 400,873 - +0.2 400,873 - +0.0 400,879 - -0.0 400,918 + -1.5 400,918 + +1.0 400,919 - -0.5 400,955 + -0.2 400,956 - +0.4 401,001 + -0.3 401,066 - +1.1 401,080 + -1.5 401,080 + -0.4 401,080 + +0.0 401,081 - -0.5 401,081 - -0.4 401,081 - +0.0 401,081 - -0.6 401,081 - -0.5 401,082 + +0.7 401,082 + -1.3 401,082 + -0.3 401,119 - -0.6 401,166 + +0.0 401,167 - +0.7 401,207 + +0.2 401,216 + +0.0 401,217 - -1.1 401,217 - -0.2 401,217 - +0.0 401,217 - +0.5 401,218 + +0.3 401,218 + -1.0 401,218 + -1.3 401,218 + +0.1 401,218 + -1.1 401,218 + -1.0 401,218 + -0.6 401,218 + +1.0 401,218 + +0.2 401,218 + +0.0 401,218 + -2.3 401,218 + +1.0 401,218 + -0.6 401,218 + -0.3 401,218 + +0.8 401,218 + +0.2 401,218 + -2.7 401,218 + -0.8 401,218 + +1.6 401,218 + +0.0 401,218 + +0.3 401,218 + -2.2 401,218 + -0.1 401,218 + +0.3 401,218 + -0.4 401,218 + +0.1 401,218 + -0.0 401,218 + -0.3 401,218 + +0.2 401,218 + +0.2 401,218 + -0.7 401,218 + -0.2 401,219 - +0.4 401,219 - -0.1 401,219 - -0.4 401,219 - +0.5 401,219 - +1.0 401,219 - -0.3 401,219 - +0.6 401,219 - -0.4 401,219 - -0.2 401,219 - -0.2 401,219 - -1.6 401,219 - -0.4 401,219 - +0.3 401,219 - -0.6 401,219 - +0.6 401,219 - -1.4 401,219 - -2.2 401,219 - -0.5 401,219 - +0.6 401,219 - -0.2 401,219 - +0.2 401,219 - +1.4 401,219 - +0.2 401,219 - +0.7 401,219 - -0.5 401,219 - -0.2 401,219 - -0.1 401,219 - +1.0 401,219 - -0.6 401,219 - -0.7 401,219 - +0.7 401,219 - +1.2 401,219 - +0.2 401,219 - -1.3 401,219 - +0.4 401,219 - -0.6 401,219 - -0.1 401,219 - -0.2 401,219 - +0.7 401,240 + +0.4 401,243 + +0.0 401,257 - -0.2 401,305 + -1.6 401,305 + -1.0 401,305 + -1.7 401,305 + -0.1 401,306 - +0.3 401,306 - -0.1 401,306 - +0.4 401,359 + DDA3937_RS01805 0.11 -0.5 401,359 + DDA3937_RS01805 0.11 -1.1 401,360 - DDA3937_RS01805 0.11 +0.7 401,360 - DDA3937_RS01805 0.11 -1.5 401,360 - DDA3937_RS01805 0.11 +0.6 401,360 - DDA3937_RS01805 0.11 -0.3 401,395 + DDA3937_RS01805 0.15 -1.0 401,395 + DDA3937_RS01805 0.15 -0.8 401,395 + DDA3937_RS01805 0.15 +0.2 401,395 + DDA3937_RS01805 0.15 +1.3 401,395 + DDA3937_RS01805 0.15 +1.0 401,395 + DDA3937_RS01805 0.15 +0.6 401,396 - DDA3937_RS01805 0.15 +1.3 401,396 - DDA3937_RS01805 0.15 -0.1 401,440 + DDA3937_RS01805 0.20 -0.8 401,441 - DDA3937_RS01805 0.20 +0.1 401,441 - DDA3937_RS01805 0.20 -0.4 401,479 + DDA3937_RS01805 0.24 +0.5 401,479 + DDA3937_RS01805 0.24 +0.6 401,479 + DDA3937_RS01805 0.24 -1.3 401,479 + DDA3937_RS01805 0.24 +0.4 401,479 + DDA3937_RS01805 0.24 +0.0 401,479 + DDA3937_RS01805 0.24 +0.0 401,479 + DDA3937_RS01805 0.24 +0.8 401,479 + DDA3937_RS01805 0.24 +0.5 401,479 + DDA3937_RS01805 0.24 +0.7 401,480 - DDA3937_RS01805 0.24 +0.4 401,480 - DDA3937_RS01805 0.24 +1.0 401,569 - DDA3937_RS01805 0.34 +1.1 401,764 + DDA3937_RS01805 0.56 +0.4 401,764 + DDA3937_RS01805 0.56 +0.4 401,765 - DDA3937_RS01805 0.56 +1.0 401,765 - DDA3937_RS01805 0.56 -0.7 401,765 - DDA3937_RS01805 0.56 -1.5 401,854 + DDA3937_RS01805 0.65 -1.7 401,854 + DDA3937_RS01805 0.65 +0.9 401,854 + DDA3937_RS01805 0.65 +0.4 401,857 - DDA3937_RS01805 0.66 -0.7 401,866 + DDA3937_RS01805 0.67 +0.2 401,866 + DDA3937_RS01805 0.67 +0.9 401,866 + DDA3937_RS01805 0.67 -0.6 401,866 + DDA3937_RS01805 0.67 +0.4 401,869 + DDA3937_RS01805 0.67 -1.1 401,869 + DDA3937_RS01805 0.67 -0.5 401,870 - DDA3937_RS01805 0.67 +0.0 401,870 - DDA3937_RS01805 0.67 -0.1 401,870 - DDA3937_RS01805 0.67 +0.1 401,974 + DDA3937_RS01805 0.79 +0.3 401,974 + DDA3937_RS01805 0.79 -0.6 402,152 + +1.0 402,153 - -0.4 402,153 - -0.2 402,153 - -1.3 402,153 - +0.2 402,155 + -0.3 402,155 + +0.3 402,155 + -1.1 402,155 + +0.0 402,155 + -1.5 402,155 + -0.1 402,155 + +1.7 402,155 + +0.1 402,156 - +0.3 402,156 - +1.3 402,167 - -0.3 402,167 - +0.3 402,172 + -1.8 402,172 + -1.3 402,173 - -0.9 402,173 - -1.0 402,175 + -0.3 402,176 - -1.5 402,176 - +0.1 402,283 - +1.0 402,372 - DDA3937_RS01810 0.17 -1.0 402,372 - DDA3937_RS01810 0.17 +0.3 402,391 - DDA3937_RS01810 0.20 -0.6 402,414 + DDA3937_RS01810 0.23 -0.3 402,477 + DDA3937_RS01810 0.33 -1.6 402,477 + DDA3937_RS01810 0.33 -0.6 402,477 + DDA3937_RS01810 0.33 -0.3 402,477 + DDA3937_RS01810 0.33 +0.9 402,593 + DDA3937_RS01810 0.50 +0.2 402,613 + DDA3937_RS01810 0.53 +0.3 402,614 - DDA3937_RS01810 0.53 -0.6 402,636 + DDA3937_RS01810 0.57 -0.6 402,662 + DDA3937_RS01810 0.61 -0.3 402,663 - DDA3937_RS01810 0.61 -0.3 402,663 - DDA3937_RS01810 0.61 -0.2 402,663 - DDA3937_RS01810 0.61 +0.5 402,761 - DDA3937_RS01810 0.76 +0.2 402,836 + DDA3937_RS01810 0.87 -1.3 402,836 + DDA3937_RS01810 0.87 -0.3 402,836 + DDA3937_RS01810 0.87 -0.9 402,837 - DDA3937_RS01810 0.87 +1.2 402,837 - DDA3937_RS01810 0.87 -0.2 402,837 - DDA3937_RS01810 0.87 -1.1 402,837 - DDA3937_RS01810 0.87 +0.1 402,943 + +0.9 402,943 + +0.7 402,943 + -0.6 402,944 - +1.0 402,944 - +1.4 402,944 - +0.9 402,944 - +0.2 402,945 + -1.2 402,945 + +0.6 402,964 - -0.6 402,964 - +1.3 402,967 + -1.3 402,967 + -0.2 402,967 + -0.3 402,968 - -0.4 403,008 + -0.6 403,018 - -0.7 403,023 + -0.9 403,023 + -1.2 403,023 + +0.0 403,024 - -0.8 403,024 - -1.2 403,024 - -0.7 403,024 - -1.0 403,024 - +0.8 403,024 - +0.5 403,039 - +0.3 403,050 + -1.2 403,050 + +0.3 403,050 + -0.9 403,050 + +0.1 403,051 - -0.2 403,052 + -1.9 403,052 + +0.8 403,052 + +0.7 403,052 + -1.0 403,052 + -0.1 403,053 - +0.0 403,053 - -0.1 403,053 - +0.0 403,053 - -0.5 403,053 - -0.2 403,053 - +0.5 403,053 - -0.2 403,053 - +0.0 403,053 - -1.7 403,053 - +0.2 403,068 + -0.4 403,068 + +0.7 403,068 + -0.6 403,068 + +0.2 403,068 + +0.4 403,069 - +0.3
Or see this region's nucleotide sequence