Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01675 and DDA3937_RS01680 are separated by 236 nucleotides DDA3937_RS01680 and DDA3937_RS01685 overlap by 4 nucleotides DDA3937_RS01685 and DDA3937_RS01690 are separated by 93 nucleotides
DDA3937_RS01675: DDA3937_RS01675 - aerobic respiration two-component sensor histidine kinase ArcB, at 370,664 to 373,003
_RS01675
DDA3937_RS01680: DDA3937_RS01680 - isoprenoid biosynthesis glyoxalase ElbB, at 373,240 to 373,893
_RS01680
DDA3937_RS01685: DDA3937_RS01685 - monofunctional biosynthetic peptidoglycan transglycosylase, at 373,890 to 374,639
_RS01685
DDA3937_RS01690: DDA3937_RS01690 - alginate lyase family protein, at 374,733 to 376,034
_RS01690
Position (kb) 373
374 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 372.263 kb on - strand at 372.352 kb on + strand, within DDA3937_RS01675 at 372.352 kb on + strand, within DDA3937_RS01675 at 372.393 kb on + strand, within DDA3937_RS01675 at 372.512 kb on + strand, within DDA3937_RS01675 at 372.512 kb on + strand, within DDA3937_RS01675 at 372.512 kb on + strand, within DDA3937_RS01675 at 372.513 kb on - strand, within DDA3937_RS01675 at 372.513 kb on - strand, within DDA3937_RS01675 at 372.544 kb on + strand, within DDA3937_RS01675 at 372.544 kb on + strand, within DDA3937_RS01675 at 372.588 kb on - strand, within DDA3937_RS01675 at 372.657 kb on + strand, within DDA3937_RS01675 at 372.657 kb on + strand, within DDA3937_RS01675 at 372.658 kb on - strand, within DDA3937_RS01675 at 372.658 kb on - strand, within DDA3937_RS01675 at 372.658 kb on - strand, within DDA3937_RS01675 at 372.658 kb on - strand, within DDA3937_RS01675 at 372.683 kb on + strand, within DDA3937_RS01675 at 372.683 kb on + strand, within DDA3937_RS01675 at 372.683 kb on + strand, within DDA3937_RS01675 at 372.683 kb on + strand, within DDA3937_RS01675 at 372.683 kb on + strand, within DDA3937_RS01675 at 372.894 kb on + strand at 372.915 kb on + strand at 372.915 kb on + strand at 372.915 kb on + strand at 372.915 kb on + strand at 372.915 kb on + strand at 372.915 kb on + strand at 372.915 kb on + strand at 372.915 kb on + strand at 372.915 kb on + strand at 372.916 kb on - strand at 372.916 kb on - strand at 372.916 kb on - strand at 372.916 kb on - strand at 372.916 kb on - strand at 372.916 kb on - strand at 372.916 kb on - strand at 372.916 kb on - strand at 372.966 kb on + strand at 372.966 kb on + strand at 372.967 kb on - strand at 373.031 kb on + strand at 373.088 kb on - strand at 373.131 kb on + strand at 373.131 kb on + strand at 373.132 kb on - strand at 373.132 kb on - strand at 373.132 kb on - strand at 373.132 kb on - strand at 373.138 kb on + strand at 373.138 kb on + strand at 373.138 kb on + strand at 373.138 kb on + strand at 373.139 kb on - strand at 373.139 kb on - strand at 373.139 kb on - strand at 373.179 kb on + strand at 373.179 kb on + strand at 373.179 kb on + strand at 373.179 kb on + strand at 373.179 kb on + strand at 373.179 kb on + strand at 373.180 kb on - strand at 373.180 kb on - strand at 373.180 kb on - strand at 373.180 kb on - strand at 373.180 kb on - strand at 373.211 kb on - strand at 373.220 kb on - strand at 373.260 kb on - strand at 373.260 kb on - strand at 373.279 kb on + strand at 373.279 kb on + strand at 373.632 kb on - strand, within DDA3937_RS01680 at 373.644 kb on + strand, within DDA3937_RS01680 at 373.644 kb on + strand, within DDA3937_RS01680 at 373.677 kb on + strand, within DDA3937_RS01680 at 373.692 kb on + strand, within DDA3937_RS01680 at 373.693 kb on - strand, within DDA3937_RS01680 at 373.763 kb on + strand, within DDA3937_RS01680 at 373.763 kb on + strand, within DDA3937_RS01680 at 373.813 kb on + strand, within DDA3937_RS01680 at 373.813 kb on + strand, within DDA3937_RS01680 at 373.813 kb on + strand at 373.813 kb on + strand, within DDA3937_RS01680 at 373.813 kb on + strand, within DDA3937_RS01680 at 373.813 kb on + strand, within DDA3937_RS01680 at 373.813 kb on + strand, within DDA3937_RS01680 at 373.814 kb on - strand, within DDA3937_RS01680 at 373.907 kb on - strand at 373.907 kb on - strand at 374.061 kb on - strand, within DDA3937_RS01685 at 374.088 kb on + strand, within DDA3937_RS01685 at 374.088 kb on + strand, within DDA3937_RS01685 at 374.088 kb on + strand, within DDA3937_RS01685 at 374.088 kb on + strand, within DDA3937_RS01685 at 374.088 kb on + strand, within DDA3937_RS01685 at 374.088 kb on + strand, within DDA3937_RS01685 at 374.088 kb on + strand, within DDA3937_RS01685 at 374.089 kb on - strand, within DDA3937_RS01685 at 374.092 kb on + strand, within DDA3937_RS01685 at 374.092 kb on + strand, within DDA3937_RS01685 at 374.092 kb on + strand, within DDA3937_RS01685 at 374.092 kb on + strand, within DDA3937_RS01685 at 374.093 kb on - strand, within DDA3937_RS01685 at 374.093 kb on - strand, within DDA3937_RS01685 at 374.321 kb on + strand, within DDA3937_RS01685 at 374.379 kb on - strand, within DDA3937_RS01685 at 374.392 kb on - strand, within DDA3937_RS01685 at 374.399 kb on + strand, within DDA3937_RS01685 at 374.399 kb on + strand, within DDA3937_RS01685 at 374.399 kb on + strand, within DDA3937_RS01685 at 374.399 kb on + strand, within DDA3937_RS01685 at 374.431 kb on + strand, within DDA3937_RS01685 at 374.432 kb on - strand, within DDA3937_RS01685 at 374.432 kb on - strand, within DDA3937_RS01685 at 374.432 kb on - strand, within DDA3937_RS01685 at 374.553 kb on + strand, within DDA3937_RS01685 at 374.553 kb on + strand, within DDA3937_RS01685 at 374.554 kb on - strand, within DDA3937_RS01685 at 374.634 kb on + strand at 374.731 kb on + strand at 374.731 kb on + strand at 374.732 kb on - strand at 374.732 kb on - strand at 374.732 kb on - strand at 374.732 kb on - strand at 374.732 kb on - strand at 374.732 kb on - strand at 374.740 kb on - strand at 374.786 kb on - strand at 374.786 kb on - strand at 374.786 kb on - strand at 374.826 kb on + strand at 374.827 kb on - strand at 374.827 kb on - strand at 374.860 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 372,263 - +1.0 372,352 + DDA3937_RS01675 0.72 +0.9 372,352 + DDA3937_RS01675 0.72 +1.0 372,393 + DDA3937_RS01675 0.74 +0.1 372,512 + DDA3937_RS01675 0.79 +1.6 372,512 + DDA3937_RS01675 0.79 +1.4 372,512 + DDA3937_RS01675 0.79 +0.2 372,513 - DDA3937_RS01675 0.79 +1.7 372,513 - DDA3937_RS01675 0.79 -2.7 372,544 + DDA3937_RS01675 0.80 +0.1 372,544 + DDA3937_RS01675 0.80 +1.0 372,588 - DDA3937_RS01675 0.82 -0.1 372,657 + DDA3937_RS01675 0.85 +1.3 372,657 + DDA3937_RS01675 0.85 +1.3 372,658 - DDA3937_RS01675 0.85 -0.5 372,658 - DDA3937_RS01675 0.85 -1.4 372,658 - DDA3937_RS01675 0.85 -2.2 372,658 - DDA3937_RS01675 0.85 +0.3 372,683 + DDA3937_RS01675 0.86 +0.9 372,683 + DDA3937_RS01675 0.86 +1.0 372,683 + DDA3937_RS01675 0.86 +1.0 372,683 + DDA3937_RS01675 0.86 +0.4 372,683 + DDA3937_RS01675 0.86 +1.6 372,894 + +1.4 372,915 + +1.6 372,915 + +0.5 372,915 + +0.6 372,915 + +0.3 372,915 + +1.2 372,915 + +0.6 372,915 + +1.6 372,915 + +0.9 372,915 + +1.1 372,916 - -0.3 372,916 - -1.0 372,916 - +1.0 372,916 - +1.1 372,916 - +0.2 372,916 - -2.0 372,916 - -0.6 372,916 - -1.9 372,966 + +2.1 372,966 + +1.1 372,967 - +0.3 373,031 + +1.8 373,088 - +1.7 373,131 + +1.9 373,131 + +1.9 373,132 - +2.0 373,132 - +0.9 373,132 - +1.8 373,132 - +1.3 373,138 + +2.0 373,138 + +1.9 373,138 + +1.7 373,138 + +2.0 373,139 - +2.0 373,139 - +1.6 373,139 - +1.6 373,179 + +2.0 373,179 + +1.9 373,179 + +1.7 373,179 + +2.9 373,179 + +1.6 373,179 + +1.7 373,180 - +0.8 373,180 - +1.6 373,180 - +1.4 373,180 - +0.8 373,180 - +1.5 373,211 - -0.6 373,220 - +1.0 373,260 - +0.0 373,260 - -0.2 373,279 + +0.5 373,279 + -0.3 373,632 - DDA3937_RS01680 0.60 -0.5 373,644 + DDA3937_RS01680 0.62 +0.0 373,644 + DDA3937_RS01680 0.62 +0.0 373,677 + DDA3937_RS01680 0.67 +0.9 373,692 + DDA3937_RS01680 0.69 -0.4 373,693 - DDA3937_RS01680 0.69 -1.0 373,763 + DDA3937_RS01680 0.80 +1.1 373,763 + DDA3937_RS01680 0.80 +0.2 373,813 + DDA3937_RS01680 0.88 +0.0 373,813 + DDA3937_RS01680 0.88 +1.0 373,813 + -0.3 373,813 + DDA3937_RS01680 0.88 -0.6 373,813 + DDA3937_RS01680 0.88 +0.5 373,813 + DDA3937_RS01680 0.88 +0.2 373,813 + DDA3937_RS01680 0.88 +0.2 373,814 - DDA3937_RS01680 0.88 +0.6 373,907 - +0.0 373,907 - +0.0 374,061 - DDA3937_RS01685 0.23 +0.9 374,088 + DDA3937_RS01685 0.26 +1.2 374,088 + DDA3937_RS01685 0.26 +1.4 374,088 + DDA3937_RS01685 0.26 -0.8 374,088 + DDA3937_RS01685 0.26 +1.0 374,088 + DDA3937_RS01685 0.26 -1.1 374,088 + DDA3937_RS01685 0.26 -0.6 374,088 + DDA3937_RS01685 0.26 +0.1 374,089 - DDA3937_RS01685 0.27 -0.7 374,092 + DDA3937_RS01685 0.27 +0.7 374,092 + DDA3937_RS01685 0.27 +0.6 374,092 + DDA3937_RS01685 0.27 -0.2 374,092 + DDA3937_RS01685 0.27 -0.1 374,093 - DDA3937_RS01685 0.27 +0.0 374,093 - DDA3937_RS01685 0.27 -0.2 374,321 + DDA3937_RS01685 0.57 +0.3 374,379 - DDA3937_RS01685 0.65 -0.0 374,392 - DDA3937_RS01685 0.67 +1.0 374,399 + DDA3937_RS01685 0.68 -0.2 374,399 + DDA3937_RS01685 0.68 -0.5 374,399 + DDA3937_RS01685 0.68 +1.3 374,399 + DDA3937_RS01685 0.68 -0.8 374,431 + DDA3937_RS01685 0.72 +0.2 374,432 - DDA3937_RS01685 0.72 -0.7 374,432 - DDA3937_RS01685 0.72 -0.2 374,432 - DDA3937_RS01685 0.72 -0.1 374,553 + DDA3937_RS01685 0.88 +0.8 374,553 + DDA3937_RS01685 0.88 -1.0 374,554 - DDA3937_RS01685 0.89 -0.7 374,634 + -0.0 374,731 + -0.0 374,731 + +0.7 374,732 - +0.4 374,732 - -1.0 374,732 - +1.0 374,732 - -0.2 374,732 - +0.7 374,732 - +0.7 374,740 - -0.5 374,786 - +0.0 374,786 - +0.4 374,786 - +0.4 374,826 + +1.2 374,827 - +0.1 374,827 - +0.8 374,860 + -0.4
Or see this region's nucleotide sequence