Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS01655

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS01645 and DDA3937_RS01650 are separated by 4 nucleotidesDDA3937_RS01650 and DDA3937_RS01655 are separated by 132 nucleotidesDDA3937_RS01655 and DDA3937_RS01660 are separated by 73 nucleotides DDA3937_RS01645: DDA3937_RS01645 - stringent starvation protein A, at 361,274 to 361,915 _RS01645 DDA3937_RS01650: DDA3937_RS01650 - ClpXP protease specificity-enhancing factor, at 361,920 to 362,417 _RS01650 DDA3937_RS01655: DDA3937_RS01655 - GFA family protein, at 362,550 to 362,960 _RS01655 DDA3937_RS01660: DDA3937_RS01660 - FAD-dependent oxidoreductase, at 363,034 to 364,452 _RS01660 Position (kb) 362 363Strain fitness (log2 ratio) -2 -1 0 1 2at 361.636 kb on + strand, within DDA3937_RS01645at 361.637 kb on - strand, within DDA3937_RS01645at 361.637 kb on - strand, within DDA3937_RS01645at 361.751 kb on + strand, within DDA3937_RS01645at 361.752 kb on - strand, within DDA3937_RS01645at 361.829 kb on + strand, within DDA3937_RS01645at 361.830 kb on - strand, within DDA3937_RS01645at 361.831 kb on + strand, within DDA3937_RS01645at 361.831 kb on + strand, within DDA3937_RS01645at 361.832 kb on - strand, within DDA3937_RS01645at 361.971 kb on + strand, within DDA3937_RS01650at 361.971 kb on + strand, within DDA3937_RS01650at 361.971 kb on + strand, within DDA3937_RS01650at 362.081 kb on + strand, within DDA3937_RS01650at 362.081 kb on + strand, within DDA3937_RS01650at 362.081 kb on + strand, within DDA3937_RS01650at 362.113 kb on + strand, within DDA3937_RS01650at 362.113 kb on + strand, within DDA3937_RS01650at 362.114 kb on - strand, within DDA3937_RS01650at 362.114 kb on - strand, within DDA3937_RS01650at 362.114 kb on - strand, within DDA3937_RS01650at 362.114 kb on - strand, within DDA3937_RS01650at 362.199 kb on + strand, within DDA3937_RS01650at 362.199 kb on + strand, within DDA3937_RS01650at 362.199 kb on + strand, within DDA3937_RS01650at 362.199 kb on + strand, within DDA3937_RS01650at 362.199 kb on + strand, within DDA3937_RS01650at 362.415 kb on + strandat 362.443 kb on - strandat 362.487 kb on - strandat 362.576 kb on - strandat 362.576 kb on - strandat 362.587 kb on + strandat 362.612 kb on + strand, within DDA3937_RS01655at 362.612 kb on + strand, within DDA3937_RS01655at 362.612 kb on + strand, within DDA3937_RS01655at 362.612 kb on + strand, within DDA3937_RS01655at 362.612 kb on + strand, within DDA3937_RS01655at 362.612 kb on + strand, within DDA3937_RS01655at 362.612 kb on + strand, within DDA3937_RS01655at 362.612 kb on + strand, within DDA3937_RS01655at 362.612 kb on + strand, within DDA3937_RS01655at 362.612 kb on + strand, within DDA3937_RS01655at 362.613 kb on - strand, within DDA3937_RS01655at 362.613 kb on - strand, within DDA3937_RS01655at 362.613 kb on - strand, within DDA3937_RS01655at 362.613 kb on - strand, within DDA3937_RS01655at 362.613 kb on - strand, within DDA3937_RS01655at 362.613 kb on - strand, within DDA3937_RS01655at 362.613 kb on - strand, within DDA3937_RS01655at 362.613 kb on - strand, within DDA3937_RS01655at 362.613 kb on - strand, within DDA3937_RS01655at 362.613 kb on - strand, within DDA3937_RS01655at 362.613 kb on - strand, within DDA3937_RS01655at 362.625 kb on + strand, within DDA3937_RS01655at 362.625 kb on + strand, within DDA3937_RS01655at 362.625 kb on + strand, within DDA3937_RS01655at 362.625 kb on + strand, within DDA3937_RS01655at 362.625 kb on + strand, within DDA3937_RS01655at 362.625 kb on + strand, within DDA3937_RS01655at 362.625 kb on + strand, within DDA3937_RS01655at 362.626 kb on - strand, within DDA3937_RS01655at 362.626 kb on - strand, within DDA3937_RS01655at 362.626 kb on - strand, within DDA3937_RS01655at 362.626 kb on - strand, within DDA3937_RS01655at 362.626 kb on - strand, within DDA3937_RS01655at 362.626 kb on - strand, within DDA3937_RS01655at 362.626 kb on - strand, within DDA3937_RS01655at 362.626 kb on - strand, within DDA3937_RS01655at 362.643 kb on - strand, within DDA3937_RS01655at 362.643 kb on - strand, within DDA3937_RS01655at 362.643 kb on - strand, within DDA3937_RS01655at 362.643 kb on - strand, within DDA3937_RS01655at 362.814 kb on + strand, within DDA3937_RS01655at 362.814 kb on + strand, within DDA3937_RS01655at 362.871 kb on + strand, within DDA3937_RS01655at 362.871 kb on + strand, within DDA3937_RS01655at 362.872 kb on - strand, within DDA3937_RS01655at 362.872 kb on - strand, within DDA3937_RS01655at 362.872 kb on - strand, within DDA3937_RS01655at 362.872 kb on - strand, within DDA3937_RS01655at 362.879 kb on + strand, within DDA3937_RS01655at 362.882 kb on + strand, within DDA3937_RS01655at 362.882 kb on + strand, within DDA3937_RS01655at 362.883 kb on - strand, within DDA3937_RS01655at 362.892 kb on + strand, within DDA3937_RS01655at 362.892 kb on + strand, within DDA3937_RS01655at 362.895 kb on + strand, within DDA3937_RS01655at 362.896 kb on - strand, within DDA3937_RS01655at 362.896 kb on - strand, within DDA3937_RS01655at 362.905 kb on + strand, within DDA3937_RS01655at 362.906 kb on - strand, within DDA3937_RS01655at 362.947 kb on + strandat 362.948 kb on - strandat 362.948 kb on - strandat 362.952 kb on - strandat 362.995 kb on - strandat 363.035 kb on + strandat 363.036 kb on - strandat 363.036 kb on - strandat 363.047 kb on + strandat 363.047 kb on + strandat 363.047 kb on + strandat 363.048 kb on - strandat 363.048 kb on - strandat 363.048 kb on - strandat 363.363 kb on + strand, within DDA3937_RS01660at 363.363 kb on + strand, within DDA3937_RS01660at 363.364 kb on - strand, within DDA3937_RS01660at 363.364 kb on - strand, within DDA3937_RS01660at 363.376 kb on + strand, within DDA3937_RS01660at 363.376 kb on + strand, within DDA3937_RS01660at 363.376 kb on + strand, within DDA3937_RS01660at 363.376 kb on + strand, within DDA3937_RS01660at 363.377 kb on - strand, within DDA3937_RS01660at 363.377 kb on - strand, within DDA3937_RS01660at 363.608 kb on + strand, within DDA3937_RS01660at 363.608 kb on + strand, within DDA3937_RS01660at 363.608 kb on + strand, within DDA3937_RS01660at 363.608 kb on + strand, within DDA3937_RS01660at 363.608 kb on + strand, within DDA3937_RS01660at 363.608 kb on + strandat 363.608 kb on + strand, within DDA3937_RS01660at 363.608 kb on + strand, within DDA3937_RS01660at 363.608 kb on + strand, within DDA3937_RS01660at 363.608 kb on + strand, within DDA3937_RS01660at 363.608 kb on + strand, within DDA3937_RS01660at 363.608 kb on + strand, within DDA3937_RS01660at 363.608 kb on + strand, within DDA3937_RS01660at 363.609 kb on - strand, within DDA3937_RS01660at 363.609 kb on - strand, within DDA3937_RS01660at 363.609 kb on - strand, within DDA3937_RS01660at 363.609 kb on - strand, within DDA3937_RS01660at 363.609 kb on - strand, within DDA3937_RS01660at 363.680 kb on + strand, within DDA3937_RS01660at 363.680 kb on + strand, within DDA3937_RS01660at 363.680 kb on + strand, within DDA3937_RS01660at 363.680 kb on + strand, within DDA3937_RS01660at 363.680 kb on + strand, within DDA3937_RS01660at 363.680 kb on + strand, within DDA3937_RS01660at 363.729 kb on - strand, within DDA3937_RS01660at 363.749 kb on - strand, within DDA3937_RS01660at 363.758 kb on + strand, within DDA3937_RS01660at 363.758 kb on + strand, within DDA3937_RS01660at 363.758 kb on + strand, within DDA3937_RS01660at 363.759 kb on - strand, within DDA3937_RS01660at 363.759 kb on - strand, within DDA3937_RS01660at 363.929 kb on + strand, within DDA3937_RS01660at 363.930 kb on - strand, within DDA3937_RS01660

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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361,636 + DDA3937_RS01645 0.56 +0.0
361,637 - DDA3937_RS01645 0.57 +0.7
361,637 - DDA3937_RS01645 0.57 +1.4
361,751 + DDA3937_RS01645 0.74 +1.3
361,752 - DDA3937_RS01645 0.74 +2.3
361,829 + DDA3937_RS01645 0.86 -0.6
361,830 - DDA3937_RS01645 0.87 -0.2
361,831 + DDA3937_RS01645 0.87 -0.6
361,831 + DDA3937_RS01645 0.87 +2.6
361,832 - DDA3937_RS01645 0.87 +1.5
361,971 + DDA3937_RS01650 0.10 +0.1
361,971 + DDA3937_RS01650 0.10 -0.1
361,971 + DDA3937_RS01650 0.10 -0.3
362,081 + DDA3937_RS01650 0.32 +0.2
362,081 + DDA3937_RS01650 0.32 +0.2
362,081 + DDA3937_RS01650 0.32 -0.4
362,113 + DDA3937_RS01650 0.39 -0.2
362,113 + DDA3937_RS01650 0.39 -0.3
362,114 - DDA3937_RS01650 0.39 +0.3
362,114 - DDA3937_RS01650 0.39 -0.6
362,114 - DDA3937_RS01650 0.39 +0.3
362,114 - DDA3937_RS01650 0.39 +0.8
362,199 + DDA3937_RS01650 0.56 -1.4
362,199 + DDA3937_RS01650 0.56 +0.5
362,199 + DDA3937_RS01650 0.56 +0.0
362,199 + DDA3937_RS01650 0.56 +0.9
362,199 + DDA3937_RS01650 0.56 +0.5
362,415 + -0.2
362,443 - +0.5
362,487 - +0.3
362,576 - -1.0
362,576 - +1.0
362,587 + +0.1
362,612 + DDA3937_RS01655 0.15 +0.1
362,612 + DDA3937_RS01655 0.15 -0.4
362,612 + DDA3937_RS01655 0.15 -1.0
362,612 + DDA3937_RS01655 0.15 -0.4
362,612 + DDA3937_RS01655 0.15 -0.3
362,612 + DDA3937_RS01655 0.15 -0.2
362,612 + DDA3937_RS01655 0.15 -0.4
362,612 + DDA3937_RS01655 0.15 -1.1
362,612 + DDA3937_RS01655 0.15 -0.5
362,612 + DDA3937_RS01655 0.15 -1.0
362,613 - DDA3937_RS01655 0.15 +0.4
362,613 - DDA3937_RS01655 0.15 +1.0
362,613 - DDA3937_RS01655 0.15 -1.3
362,613 - DDA3937_RS01655 0.15 -1.0
362,613 - DDA3937_RS01655 0.15 -1.1
362,613 - DDA3937_RS01655 0.15 +0.0
362,613 - DDA3937_RS01655 0.15 -0.2
362,613 - DDA3937_RS01655 0.15 -1.3
362,613 - DDA3937_RS01655 0.15 +0.0
362,613 - DDA3937_RS01655 0.15 -0.6
362,613 - DDA3937_RS01655 0.15 -0.6
362,625 + DDA3937_RS01655 0.18 -0.6
362,625 + DDA3937_RS01655 0.18 +1.0
362,625 + DDA3937_RS01655 0.18 -0.6
362,625 + DDA3937_RS01655 0.18 -0.6
362,625 + DDA3937_RS01655 0.18 -0.3
362,625 + DDA3937_RS01655 0.18 -1.6
362,625 + DDA3937_RS01655 0.18 -0.2
362,626 - DDA3937_RS01655 0.18 -0.3
362,626 - DDA3937_RS01655 0.18 -0.2
362,626 - DDA3937_RS01655 0.18 -0.1
362,626 - DDA3937_RS01655 0.18 +0.0
362,626 - DDA3937_RS01655 0.18 -0.4
362,626 - DDA3937_RS01655 0.18 -0.4
362,626 - DDA3937_RS01655 0.18 -1.8
362,626 - DDA3937_RS01655 0.18 +1.0
362,643 - DDA3937_RS01655 0.23 +0.1
362,643 - DDA3937_RS01655 0.23 +0.1
362,643 - DDA3937_RS01655 0.23 +0.7
362,643 - DDA3937_RS01655 0.23 -1.0
362,814 + DDA3937_RS01655 0.64 -0.6
362,814 + DDA3937_RS01655 0.64 +1.6
362,871 + DDA3937_RS01655 0.78 +0.8
362,871 + DDA3937_RS01655 0.78 -2.0
362,872 - DDA3937_RS01655 0.78 -1.1
362,872 - DDA3937_RS01655 0.78 -1.4
362,872 - DDA3937_RS01655 0.78 -0.9
362,872 - DDA3937_RS01655 0.78 -0.6
362,879 + DDA3937_RS01655 0.80 +2.3
362,882 + DDA3937_RS01655 0.81 +0.2
362,882 + DDA3937_RS01655 0.81 -0.3
362,883 - DDA3937_RS01655 0.81 +0.5
362,892 + DDA3937_RS01655 0.83 +0.1
362,892 + DDA3937_RS01655 0.83 -0.2
362,895 + DDA3937_RS01655 0.84 -0.5
362,896 - DDA3937_RS01655 0.84 -0.1
362,896 - DDA3937_RS01655 0.84 +0.2
362,905 + DDA3937_RS01655 0.86 -0.9
362,906 - DDA3937_RS01655 0.87 -0.1
362,947 + -0.7
362,948 - +1.0
362,948 - -1.4
362,952 - +1.0
362,995 - -0.2
363,035 + -1.6
363,036 - +0.6
363,036 - -2.2
363,047 + -0.6
363,047 + -0.5
363,047 + +0.4
363,048 - -2.4
363,048 - +0.8
363,048 - -0.8
363,363 + DDA3937_RS01660 0.23 -0.5
363,363 + DDA3937_RS01660 0.23 +0.7
363,364 - DDA3937_RS01660 0.23 -0.4
363,364 - DDA3937_RS01660 0.23 -0.1
363,376 + DDA3937_RS01660 0.24 +0.5
363,376 + DDA3937_RS01660 0.24 -0.8
363,376 + DDA3937_RS01660 0.24 -0.3
363,376 + DDA3937_RS01660 0.24 +0.2
363,377 - DDA3937_RS01660 0.24 -0.6
363,377 - DDA3937_RS01660 0.24 +0.4
363,608 + DDA3937_RS01660 0.40 +0.9
363,608 + DDA3937_RS01660 0.40 +1.2
363,608 + DDA3937_RS01660 0.40 -0.4
363,608 + DDA3937_RS01660 0.40 +0.5
363,608 + DDA3937_RS01660 0.40 -2.3
363,608 + +1.4
363,608 + DDA3937_RS01660 0.40 -1.0
363,608 + DDA3937_RS01660 0.40 +0.0
363,608 + DDA3937_RS01660 0.40 -1.0
363,608 + DDA3937_RS01660 0.40 -0.1
363,608 + DDA3937_RS01660 0.40 -0.3
363,608 + DDA3937_RS01660 0.40 -0.0
363,608 + DDA3937_RS01660 0.40 +0.0
363,609 - DDA3937_RS01660 0.41 +0.1
363,609 - DDA3937_RS01660 0.41 -0.2
363,609 - DDA3937_RS01660 0.41 -0.4
363,609 - DDA3937_RS01660 0.41 +0.3
363,609 - DDA3937_RS01660 0.41 +1.0
363,680 + DDA3937_RS01660 0.46 +1.8
363,680 + DDA3937_RS01660 0.46 -0.6
363,680 + DDA3937_RS01660 0.46 +0.6
363,680 + DDA3937_RS01660 0.46 +1.0
363,680 + DDA3937_RS01660 0.46 -1.1
363,680 + DDA3937_RS01660 0.46 -1.0
363,729 - DDA3937_RS01660 0.49 +0.2
363,749 - DDA3937_RS01660 0.50 -0.5
363,758 + DDA3937_RS01660 0.51 -0.1
363,758 + DDA3937_RS01660 0.51 -0.3
363,758 + DDA3937_RS01660 0.51 -0.1
363,759 - DDA3937_RS01660 0.51 -0.6
363,759 - DDA3937_RS01660 0.51 +0.7
363,929 + DDA3937_RS01660 0.63 -0.2
363,930 - DDA3937_RS01660 0.63 -0.3

Or see this region's nucleotide sequence