Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01540 and DDA3937_RS01545 overlap by 23 nucleotides DDA3937_RS01545 and DDA3937_RS01550 overlap by 4 nucleotides DDA3937_RS01550 and DDA3937_RS01555 are separated by 49 nucleotides
DDA3937_RS01540: DDA3937_RS01540 - lipopolysaccharide ABC transporter substrate-binding protein LptA, at 343,163 to 343,741
_RS01540
DDA3937_RS01545: DDA3937_RS01545 - LPS export ABC transporter periplasmic protein LptC, at 343,719 to 344,288
_RS01545
DDA3937_RS01550: DDA3937_RS01550 - 3-deoxy-manno-octulosonate-8-phosphatase KdsC, at 344,285 to 344,851
_RS01550
DDA3937_RS01555: DDA3937_RS01555 - arabinose-5-phosphate isomerase KdsD, at 344,901 to 345,887
_RS01555
Position (kb) 344
345 Strain fitness (log2 ratio) -2
-1
0
1
2 at 343.879 kb on - strand, within DDA3937_RS01545 at 344.318 kb on - strand at 344.336 kb on - strand at 344.378 kb on - strand, within DDA3937_RS01550 at 344.519 kb on - strand, within DDA3937_RS01550 at 344.519 kb on - strand, within DDA3937_RS01550 at 344.519 kb on - strand, within DDA3937_RS01550 at 344.519 kb on - strand, within DDA3937_RS01550 at 344.566 kb on - strand, within DDA3937_RS01550 at 344.568 kb on - strand, within DDA3937_RS01550 at 344.568 kb on - strand, within DDA3937_RS01550 at 344.568 kb on - strand, within DDA3937_RS01550 at 344.568 kb on - strand, within DDA3937_RS01550 at 344.630 kb on - strand, within DDA3937_RS01550 at 344.724 kb on + strand, within DDA3937_RS01550 at 344.724 kb on + strand, within DDA3937_RS01550 at 344.724 kb on + strand, within DDA3937_RS01550 at 344.725 kb on - strand, within DDA3937_RS01550 at 344.725 kb on - strand, within DDA3937_RS01550 at 344.744 kb on + strand, within DDA3937_RS01550 at 344.745 kb on - strand, within DDA3937_RS01550 at 344.774 kb on + strand at 344.774 kb on + strand, within DDA3937_RS01550 at 344.774 kb on + strand, within DDA3937_RS01550 at 344.774 kb on + strand, within DDA3937_RS01550 at 344.774 kb on + strand, within DDA3937_RS01550 at 344.775 kb on - strand, within DDA3937_RS01550 at 344.775 kb on - strand, within DDA3937_RS01550 at 344.775 kb on - strand, within DDA3937_RS01550 at 344.775 kb on - strand, within DDA3937_RS01550 at 344.775 kb on - strand, within DDA3937_RS01550 at 344.775 kb on - strand, within DDA3937_RS01550 at 344.775 kb on - strand, within DDA3937_RS01550 at 344.775 kb on - strand, within DDA3937_RS01550 at 344.775 kb on - strand, within DDA3937_RS01550 at 344.775 kb on - strand, within DDA3937_RS01550 at 344.775 kb on - strand, within DDA3937_RS01550 at 344.777 kb on - strand, within DDA3937_RS01550 at 344.859 kb on + strand at 344.859 kb on + strand at 344.860 kb on - strand at 344.860 kb on - strand at 344.860 kb on - strand at 344.860 kb on - strand at 344.860 kb on - strand at 344.885 kb on + strand at 344.886 kb on - strand at 344.886 kb on - strand at 344.886 kb on - strand at 344.886 kb on - strand at 344.904 kb on + strand at 344.905 kb on - strand at 344.905 kb on - strand at 344.905 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 343,879 - DDA3937_RS01545 0.28 -0.8 344,318 - +0.6 344,336 - +0.0 344,378 - DDA3937_RS01550 0.16 -0.6 344,519 - DDA3937_RS01550 0.41 -1.6 344,519 - DDA3937_RS01550 0.41 +1.6 344,519 - DDA3937_RS01550 0.41 -0.5 344,519 - DDA3937_RS01550 0.41 -0.4 344,566 - DDA3937_RS01550 0.50 -1.6 344,568 - DDA3937_RS01550 0.50 -0.3 344,568 - DDA3937_RS01550 0.50 -0.1 344,568 - DDA3937_RS01550 0.50 -1.0 344,568 - DDA3937_RS01550 0.50 -1.4 344,630 - DDA3937_RS01550 0.61 -0.7 344,724 + DDA3937_RS01550 0.77 -1.3 344,724 + DDA3937_RS01550 0.77 +0.3 344,724 + DDA3937_RS01550 0.77 +0.0 344,725 - DDA3937_RS01550 0.78 -1.3 344,725 - DDA3937_RS01550 0.78 -0.6 344,744 + DDA3937_RS01550 0.81 -1.6 344,745 - DDA3937_RS01550 0.81 -1.1 344,774 + +1.0 344,774 + DDA3937_RS01550 0.86 -1.0 344,774 + DDA3937_RS01550 0.86 +1.3 344,774 + DDA3937_RS01550 0.86 -1.0 344,774 + DDA3937_RS01550 0.86 -1.3 344,775 - DDA3937_RS01550 0.86 +1.0 344,775 - DDA3937_RS01550 0.86 -1.3 344,775 - DDA3937_RS01550 0.86 -1.2 344,775 - DDA3937_RS01550 0.86 +0.3 344,775 - DDA3937_RS01550 0.86 -0.3 344,775 - DDA3937_RS01550 0.86 -1.3 344,775 - DDA3937_RS01550 0.86 -0.6 344,775 - DDA3937_RS01550 0.86 -0.2 344,775 - DDA3937_RS01550 0.86 -0.8 344,775 - DDA3937_RS01550 0.86 -2.4 344,775 - DDA3937_RS01550 0.86 -1.6 344,777 - DDA3937_RS01550 0.87 -1.7 344,859 + -0.8 344,859 + -1.3 344,860 - +0.9 344,860 - -0.1 344,860 - +0.2 344,860 - +1.4 344,860 - -0.3 344,885 + +0.6 344,886 - +0.7 344,886 - +1.9 344,886 - +0.4 344,886 - -0.4 344,904 + -0.9 344,905 - -0.2 344,905 - -0.8 344,905 - -0.8
Or see this region's nucleotide sequence