Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01520 and DDA3937_RS01525 are separated by 93 nucleotides DDA3937_RS01525 and DDA3937_RS01530 are separated by 24 nucleotides DDA3937_RS01530 and DDA3937_RS01535 are separated by 47 nucleotides DDA3937_RS01535 and DDA3937_RS01540 are separated by 15 nucleotides
DDA3937_RS01520: DDA3937_RS01520 - PTS IIA-like nitrogen regulatory protein PtsN, at 340,047 to 340,535
_RS01520
DDA3937_RS01525: DDA3937_RS01525 - ribosome hibernation promoting factor, at 340,629 to 340,916
_RS01525
DDA3937_RS01530: DDA3937_RS01530 - RNA polymerase factor sigma-54, at 340,941 to 342,374
_RS01530
DDA3937_RS01535: DDA3937_RS01535 - LPS export ABC transporter ATP-binding protein, at 342,422 to 343,147
_RS01535
DDA3937_RS01540: DDA3937_RS01540 - lipopolysaccharide ABC transporter substrate-binding protein LptA, at 343,163 to 343,741
_RS01540
Position (kb) 340
341
342
343 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 339.948 kb on + strand at 339.948 kb on + strand at 339.948 kb on + strand at 339.952 kb on + strand at 339.953 kb on - strand at 339.953 kb on - strand at 340.088 kb on - strand at 340.169 kb on + strand, within DDA3937_RS01520 at 340.169 kb on + strand, within DDA3937_RS01520 at 340.169 kb on + strand, within DDA3937_RS01520 at 340.169 kb on + strand, within DDA3937_RS01520 at 340.169 kb on + strand, within DDA3937_RS01520 at 340.169 kb on + strand, within DDA3937_RS01520 at 340.169 kb on + strand, within DDA3937_RS01520 at 340.169 kb on + strand, within DDA3937_RS01520 at 340.169 kb on + strand, within DDA3937_RS01520 at 340.170 kb on - strand, within DDA3937_RS01520 at 340.170 kb on - strand, within DDA3937_RS01520 at 340.170 kb on - strand, within DDA3937_RS01520 at 340.170 kb on - strand, within DDA3937_RS01520 at 340.170 kb on - strand, within DDA3937_RS01520 at 340.170 kb on - strand, within DDA3937_RS01520 at 340.170 kb on - strand, within DDA3937_RS01520 at 340.173 kb on + strand, within DDA3937_RS01520 at 340.173 kb on + strand, within DDA3937_RS01520 at 340.173 kb on + strand, within DDA3937_RS01520 at 340.174 kb on - strand, within DDA3937_RS01520 at 340.174 kb on - strand, within DDA3937_RS01520 at 340.174 kb on - strand, within DDA3937_RS01520 at 340.184 kb on + strand, within DDA3937_RS01520 at 340.184 kb on + strand, within DDA3937_RS01520 at 340.185 kb on - strand, within DDA3937_RS01520 at 340.185 kb on - strand, within DDA3937_RS01520 at 340.185 kb on - strand, within DDA3937_RS01520 at 340.298 kb on + strand, within DDA3937_RS01520 at 340.298 kb on + strand, within DDA3937_RS01520 at 340.299 kb on - strand, within DDA3937_RS01520 at 340.508 kb on + strand at 340.509 kb on - strand at 340.509 kb on - strand at 340.538 kb on + strand at 340.538 kb on + strand at 340.539 kb on - strand at 340.539 kb on - strand at 340.539 kb on - strand at 340.549 kb on - strand at 340.565 kb on + strand at 340.565 kb on + strand at 340.566 kb on - strand at 340.566 kb on - strand at 340.566 kb on - strand at 340.566 kb on - strand at 340.646 kb on + strand at 340.646 kb on + strand at 340.652 kb on + strand at 340.652 kb on + strand at 340.653 kb on - strand at 340.653 kb on - strand at 340.653 kb on - strand at 340.663 kb on - strand, within DDA3937_RS01525 at 340.705 kb on + strand, within DDA3937_RS01525 at 340.705 kb on + strand, within DDA3937_RS01525 at 340.705 kb on + strand, within DDA3937_RS01525 at 340.705 kb on + strand, within DDA3937_RS01525 at 340.705 kb on + strand, within DDA3937_RS01525 at 340.705 kb on + strand, within DDA3937_RS01525 at 340.705 kb on + strand, within DDA3937_RS01525 at 340.705 kb on + strand, within DDA3937_RS01525 at 340.705 kb on + strand, within DDA3937_RS01525 at 340.706 kb on - strand, within DDA3937_RS01525 at 340.706 kb on - strand, within DDA3937_RS01525 at 340.706 kb on - strand, within DDA3937_RS01525 at 340.706 kb on - strand, within DDA3937_RS01525 at 340.706 kb on - strand, within DDA3937_RS01525 at 340.706 kb on - strand, within DDA3937_RS01525 at 340.706 kb on - strand, within DDA3937_RS01525 at 340.706 kb on - strand, within DDA3937_RS01525 at 340.709 kb on + strand, within DDA3937_RS01525 at 340.709 kb on + strand, within DDA3937_RS01525 at 340.709 kb on + strand at 340.709 kb on + strand, within DDA3937_RS01525 at 340.709 kb on + strand, within DDA3937_RS01525 at 340.709 kb on + strand, within DDA3937_RS01525 at 340.710 kb on - strand, within DDA3937_RS01525 at 340.710 kb on - strand, within DDA3937_RS01525 at 340.710 kb on - strand, within DDA3937_RS01525 at 340.710 kb on - strand, within DDA3937_RS01525 at 340.710 kb on - strand, within DDA3937_RS01525 at 340.804 kb on + strand, within DDA3937_RS01525 at 340.804 kb on + strand, within DDA3937_RS01525 at 340.804 kb on + strand, within DDA3937_RS01525 at 340.804 kb on + strand, within DDA3937_RS01525 at 340.805 kb on - strand, within DDA3937_RS01525 at 340.805 kb on - strand, within DDA3937_RS01525 at 340.805 kb on - strand, within DDA3937_RS01525 at 340.805 kb on - strand, within DDA3937_RS01525 at 340.805 kb on - strand, within DDA3937_RS01525 at 340.805 kb on - strand, within DDA3937_RS01525 at 340.828 kb on + strand, within DDA3937_RS01525 at 340.829 kb on - strand, within DDA3937_RS01525 at 340.829 kb on - strand, within DDA3937_RS01525 at 340.829 kb on - strand, within DDA3937_RS01525 at 340.829 kb on - strand, within DDA3937_RS01525 at 340.851 kb on + strand, within DDA3937_RS01525 at 340.857 kb on + strand, within DDA3937_RS01525 at 340.907 kb on + strand at 340.908 kb on - strand at 340.908 kb on - strand at 340.916 kb on + strand at 340.917 kb on - strand at 340.935 kb on + strand at 340.936 kb on - strand at 340.936 kb on - strand at 340.976 kb on + strand at 340.976 kb on + strand at 340.980 kb on + strand at 340.993 kb on + strand at 341.174 kb on - strand, within DDA3937_RS01530 at 341.223 kb on + strand, within DDA3937_RS01530 at 341.361 kb on - strand, within DDA3937_RS01530 at 341.467 kb on + strand, within DDA3937_RS01530 at 341.504 kb on + strand, within DDA3937_RS01530 at 341.507 kb on + strand, within DDA3937_RS01530 at 341.563 kb on + strand, within DDA3937_RS01530 at 341.563 kb on + strand, within DDA3937_RS01530 at 341.564 kb on - strand at 341.652 kb on - strand, within DDA3937_RS01530 at 341.829 kb on + strand, within DDA3937_RS01530 at 341.830 kb on - strand, within DDA3937_RS01530 at 342.007 kb on + strand at 342.007 kb on + strand, within DDA3937_RS01530 at 342.040 kb on + strand, within DDA3937_RS01530 at 342.040 kb on + strand, within DDA3937_RS01530 at 342.143 kb on + strand, within DDA3937_RS01530 at 342.143 kb on + strand, within DDA3937_RS01530 at 342.144 kb on - strand, within DDA3937_RS01530 at 342.318 kb on + strand at 342.319 kb on - strand at 342.374 kb on + strand at 342.409 kb on + strand at 342.409 kb on + strand at 342.409 kb on + strand at 342.410 kb on - strand at 342.420 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 339,948 + +0.8 339,948 + +1.6 339,948 + +1.4 339,952 + -0.7 339,953 - +0.6 339,953 - +0.2 340,088 - -0.6 340,169 + DDA3937_RS01520 0.25 +0.1 340,169 + DDA3937_RS01520 0.25 -0.9 340,169 + DDA3937_RS01520 0.25 -1.0 340,169 + DDA3937_RS01520 0.25 -0.7 340,169 + DDA3937_RS01520 0.25 +0.0 340,169 + DDA3937_RS01520 0.25 +0.8 340,169 + DDA3937_RS01520 0.25 +1.2 340,169 + DDA3937_RS01520 0.25 -0.2 340,169 + DDA3937_RS01520 0.25 +0.2 340,170 - DDA3937_RS01520 0.25 -1.3 340,170 - DDA3937_RS01520 0.25 +0.1 340,170 - DDA3937_RS01520 0.25 -1.1 340,170 - DDA3937_RS01520 0.25 -1.8 340,170 - DDA3937_RS01520 0.25 -0.6 340,170 - DDA3937_RS01520 0.25 -0.3 340,170 - DDA3937_RS01520 0.25 -2.0 340,173 + DDA3937_RS01520 0.26 +0.2 340,173 + DDA3937_RS01520 0.26 -0.2 340,173 + DDA3937_RS01520 0.26 -2.4 340,174 - DDA3937_RS01520 0.26 -0.6 340,174 - DDA3937_RS01520 0.26 -0.6 340,174 - DDA3937_RS01520 0.26 -0.6 340,184 + DDA3937_RS01520 0.28 -0.1 340,184 + DDA3937_RS01520 0.28 -0.2 340,185 - DDA3937_RS01520 0.28 +1.6 340,185 - DDA3937_RS01520 0.28 -0.7 340,185 - DDA3937_RS01520 0.28 -2.4 340,298 + DDA3937_RS01520 0.51 -0.7 340,298 + DDA3937_RS01520 0.51 +1.0 340,299 - DDA3937_RS01520 0.52 +1.0 340,508 + +1.0 340,509 - +1.0 340,509 - -0.4 340,538 + +0.3 340,538 + -0.8 340,539 - -0.0 340,539 - -1.0 340,539 - -0.6 340,549 - -0.6 340,565 + +0.8 340,565 + -0.2 340,566 - -0.2 340,566 - -1.5 340,566 - +1.0 340,566 - -1.0 340,646 + -0.4 340,646 + -0.6 340,652 + +1.8 340,652 + -1.8 340,653 - +0.0 340,653 - -0.8 340,653 - -1.8 340,663 - DDA3937_RS01525 0.12 -0.6 340,705 + DDA3937_RS01525 0.26 -0.1 340,705 + DDA3937_RS01525 0.26 -0.8 340,705 + DDA3937_RS01525 0.26 -0.6 340,705 + DDA3937_RS01525 0.26 -2.1 340,705 + DDA3937_RS01525 0.26 -1.0 340,705 + DDA3937_RS01525 0.26 -0.9 340,705 + DDA3937_RS01525 0.26 -1.2 340,705 + DDA3937_RS01525 0.26 -0.6 340,705 + DDA3937_RS01525 0.26 -2.3 340,706 - DDA3937_RS01525 0.27 -0.8 340,706 - DDA3937_RS01525 0.27 +0.6 340,706 - DDA3937_RS01525 0.27 +0.0 340,706 - DDA3937_RS01525 0.27 -0.5 340,706 - DDA3937_RS01525 0.27 -1.8 340,706 - DDA3937_RS01525 0.27 +0.3 340,706 - DDA3937_RS01525 0.27 -0.9 340,706 - DDA3937_RS01525 0.27 -0.6 340,709 + DDA3937_RS01525 0.28 -0.1 340,709 + DDA3937_RS01525 0.28 -0.8 340,709 + -0.6 340,709 + DDA3937_RS01525 0.28 -1.0 340,709 + DDA3937_RS01525 0.28 -0.7 340,709 + DDA3937_RS01525 0.28 -0.8 340,710 - DDA3937_RS01525 0.28 +0.4 340,710 - DDA3937_RS01525 0.28 +0.3 340,710 - DDA3937_RS01525 0.28 -0.3 340,710 - DDA3937_RS01525 0.28 -0.7 340,710 - DDA3937_RS01525 0.28 -0.8 340,804 + DDA3937_RS01525 0.61 -2.3 340,804 + DDA3937_RS01525 0.61 -1.0 340,804 + DDA3937_RS01525 0.61 -0.1 340,804 + DDA3937_RS01525 0.61 -0.3 340,805 - DDA3937_RS01525 0.61 -1.6 340,805 - DDA3937_RS01525 0.61 -0.6 340,805 - DDA3937_RS01525 0.61 -1.6 340,805 - DDA3937_RS01525 0.61 +0.2 340,805 - DDA3937_RS01525 0.61 +0.3 340,805 - DDA3937_RS01525 0.61 -1.6 340,828 + DDA3937_RS01525 0.69 -2.8 340,829 - DDA3937_RS01525 0.69 -0.7 340,829 - DDA3937_RS01525 0.69 -1.3 340,829 - DDA3937_RS01525 0.69 +0.3 340,829 - DDA3937_RS01525 0.69 -1.0 340,851 + DDA3937_RS01525 0.77 +0.3 340,857 + DDA3937_RS01525 0.79 -1.3 340,907 + -0.7 340,908 - -0.8 340,908 - -0.4 340,916 + -0.7 340,917 - +0.0 340,935 + -0.6 340,936 - -1.6 340,936 - -1.1 340,976 + -0.3 340,976 + +0.0 340,980 + -1.6 340,993 + +0.3 341,174 - DDA3937_RS01530 0.16 -1.3 341,223 + DDA3937_RS01530 0.20 +0.4 341,361 - DDA3937_RS01530 0.29 +1.6 341,467 + DDA3937_RS01530 0.37 +0.3 341,504 + DDA3937_RS01530 0.39 -1.0 341,507 + DDA3937_RS01530 0.39 -1.0 341,563 + DDA3937_RS01530 0.43 -1.4 341,563 + DDA3937_RS01530 0.43 +0.3 341,564 - -1.3 341,652 - DDA3937_RS01530 0.50 +0.0 341,829 + DDA3937_RS01530 0.62 -0.8 341,830 - DDA3937_RS01530 0.62 +1.0 342,007 + +0.4 342,007 + DDA3937_RS01530 0.74 -0.6 342,040 + DDA3937_RS01530 0.77 -1.4 342,040 + DDA3937_RS01530 0.77 -0.8 342,143 + DDA3937_RS01530 0.84 -2.0 342,143 + DDA3937_RS01530 0.84 +0.0 342,144 - DDA3937_RS01530 0.84 -1.4 342,318 + -0.2 342,319 - -0.1 342,374 + -2.1 342,409 + -0.2 342,409 + -0.9 342,409 + +0.4 342,410 - +0.7 342,420 + -1.7
Or see this region's nucleotide sequence