Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01500 and DDA3937_RS01505 are separated by 66 nucleotides DDA3937_RS01505 and DDA3937_RS01510 are separated by 180 nucleotides DDA3937_RS01510 and DDA3937_RS01515 overlap by 4 nucleotides
DDA3937_RS01500: DDA3937_RS01500 - metalloprotease PmbA, at 336,777 to 338,117
_RS01500
DDA3937_RS01505: DDA3937_RS01505 - nucleoside diphosphate kinase regulator, at 338,184 to 338,594
_RS01505
DDA3937_RS01510: DDA3937_RS01510 - PTS phosphocarrier protein NPr, at 338,775 to 339,047
_RS01510
DDA3937_RS01515: DDA3937_RS01515 - RNase adapter RapZ, at 339,044 to 339,898
_RS01515
Position (kb) 338
339 Strain fitness (log2 ratio) -2
-1
0
1
2 at 337.253 kb on + strand, within DDA3937_RS01500 at 337.263 kb on + strand, within DDA3937_RS01500 at 337.263 kb on + strand, within DDA3937_RS01500 at 337.309 kb on - strand, within DDA3937_RS01500 at 337.309 kb on - strand, within DDA3937_RS01500 at 337.309 kb on - strand, within DDA3937_RS01500 at 337.377 kb on + strand, within DDA3937_RS01500 at 337.378 kb on - strand, within DDA3937_RS01500 at 337.383 kb on + strand, within DDA3937_RS01500 at 337.475 kb on + strand, within DDA3937_RS01500 at 337.476 kb on - strand, within DDA3937_RS01500 at 337.572 kb on + strand, within DDA3937_RS01500 at 337.577 kb on + strand, within DDA3937_RS01500 at 337.578 kb on - strand, within DDA3937_RS01500 at 337.578 kb on - strand, within DDA3937_RS01500 at 337.578 kb on - strand, within DDA3937_RS01500 at 337.578 kb on - strand, within DDA3937_RS01500 at 337.758 kb on + strand, within DDA3937_RS01500 at 337.758 kb on + strand, within DDA3937_RS01500 at 337.758 kb on + strand, within DDA3937_RS01500 at 337.758 kb on + strand, within DDA3937_RS01500 at 337.758 kb on + strand, within DDA3937_RS01500 at 337.758 kb on + strand, within DDA3937_RS01500 at 337.759 kb on - strand, within DDA3937_RS01500 at 337.759 kb on - strand, within DDA3937_RS01500 at 337.759 kb on - strand, within DDA3937_RS01500 at 337.770 kb on - strand, within DDA3937_RS01500 at 337.811 kb on + strand, within DDA3937_RS01500 at 337.812 kb on - strand, within DDA3937_RS01500 at 338.015 kb on + strand at 338.015 kb on + strand at 338.015 kb on + strand at 338.016 kb on - strand at 338.025 kb on - strand at 338.025 kb on - strand at 338.113 kb on + strand at 338.113 kb on + strand at 338.113 kb on + strand at 338.115 kb on + strand at 338.115 kb on + strand at 338.115 kb on + strand at 338.115 kb on + strand at 338.115 kb on + strand at 338.116 kb on - strand at 338.116 kb on - strand at 338.116 kb on - strand at 338.116 kb on - strand at 338.182 kb on + strand at 338.183 kb on - strand at 338.194 kb on + strand at 338.218 kb on + strand at 338.218 kb on + strand at 338.277 kb on - strand, within DDA3937_RS01505 at 338.277 kb on - strand, within DDA3937_RS01505 at 338.381 kb on + strand, within DDA3937_RS01505 at 338.382 kb on - strand, within DDA3937_RS01505 at 338.423 kb on + strand, within DDA3937_RS01505 at 338.424 kb on - strand, within DDA3937_RS01505 at 338.571 kb on - strand at 338.589 kb on - strand at 338.594 kb on + strand at 338.594 kb on + strand at 338.594 kb on + strand at 338.595 kb on - strand at 338.595 kb on - strand at 338.617 kb on - strand at 338.617 kb on - strand at 338.655 kb on + strand at 338.655 kb on + strand at 338.655 kb on + strand at 338.655 kb on + strand at 338.656 kb on - strand at 338.656 kb on - strand at 338.656 kb on - strand at 338.660 kb on + strand at 338.661 kb on - strand at 338.671 kb on + strand at 338.671 kb on + strand at 338.671 kb on + strand at 338.672 kb on - strand at 338.691 kb on + strand at 338.699 kb on - strand at 338.707 kb on - strand at 338.776 kb on + strand at 338.777 kb on - strand at 338.777 kb on - strand at 338.802 kb on + strand at 338.803 kb on - strand, within DDA3937_RS01510 at 338.811 kb on - strand, within DDA3937_RS01510 at 338.940 kb on + strand, within DDA3937_RS01510 at 338.940 kb on + strand, within DDA3937_RS01510 at 338.941 kb on - strand, within DDA3937_RS01510 at 338.967 kb on + strand, within DDA3937_RS01510 at 338.967 kb on + strand, within DDA3937_RS01510 at 339.083 kb on + strand at 339.083 kb on + strand at 339.084 kb on - strand at 339.132 kb on + strand, within DDA3937_RS01515 at 339.132 kb on + strand, within DDA3937_RS01515 at 339.132 kb on + strand, within DDA3937_RS01515 at 339.132 kb on + strand, within DDA3937_RS01515 at 339.133 kb on - strand, within DDA3937_RS01515 at 339.133 kb on - strand, within DDA3937_RS01515 at 339.133 kb on - strand, within DDA3937_RS01515 at 339.175 kb on + strand at 339.176 kb on - strand, within DDA3937_RS01515 at 339.180 kb on + strand, within DDA3937_RS01515 at 339.180 kb on + strand, within DDA3937_RS01515 at 339.180 kb on + strand, within DDA3937_RS01515 at 339.180 kb on + strand, within DDA3937_RS01515 at 339.181 kb on - strand, within DDA3937_RS01515 at 339.181 kb on - strand, within DDA3937_RS01515 at 339.181 kb on - strand, within DDA3937_RS01515 at 339.181 kb on - strand, within DDA3937_RS01515 at 339.181 kb on - strand, within DDA3937_RS01515 at 339.225 kb on + strand, within DDA3937_RS01515 at 339.225 kb on + strand, within DDA3937_RS01515 at 339.226 kb on - strand, within DDA3937_RS01515 at 339.226 kb on - strand, within DDA3937_RS01515 at 339.226 kb on - strand, within DDA3937_RS01515 at 339.240 kb on + strand, within DDA3937_RS01515 at 339.240 kb on + strand, within DDA3937_RS01515 at 339.241 kb on - strand, within DDA3937_RS01515 at 339.241 kb on - strand, within DDA3937_RS01515 at 339.241 kb on - strand, within DDA3937_RS01515 at 339.241 kb on - strand, within DDA3937_RS01515 at 339.241 kb on - strand, within DDA3937_RS01515 at 339.337 kb on + strand, within DDA3937_RS01515 at 339.364 kb on - strand, within DDA3937_RS01515 at 339.364 kb on - strand, within DDA3937_RS01515 at 339.394 kb on - strand, within DDA3937_RS01515 at 339.394 kb on - strand, within DDA3937_RS01515 at 339.476 kb on + strand, within DDA3937_RS01515 at 339.476 kb on + strand, within DDA3937_RS01515 at 339.477 kb on - strand, within DDA3937_RS01515 at 339.493 kb on + strand, within DDA3937_RS01515
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 337,253 + DDA3937_RS01500 0.35 -0.1 337,263 + DDA3937_RS01500 0.36 -0.6 337,263 + DDA3937_RS01500 0.36 -1.3 337,309 - DDA3937_RS01500 0.40 -1.9 337,309 - DDA3937_RS01500 0.40 +0.8 337,309 - DDA3937_RS01500 0.40 +0.3 337,377 + DDA3937_RS01500 0.45 -0.8 337,378 - DDA3937_RS01500 0.45 +0.5 337,383 + DDA3937_RS01500 0.45 -0.7 337,475 + DDA3937_RS01500 0.52 -0.5 337,476 - DDA3937_RS01500 0.52 +0.0 337,572 + DDA3937_RS01500 0.59 -0.6 337,577 + DDA3937_RS01500 0.60 -1.8 337,578 - DDA3937_RS01500 0.60 +0.2 337,578 - DDA3937_RS01500 0.60 -1.4 337,578 - DDA3937_RS01500 0.60 -1.8 337,578 - DDA3937_RS01500 0.60 +0.7 337,758 + DDA3937_RS01500 0.73 -0.9 337,758 + DDA3937_RS01500 0.73 +0.2 337,758 + DDA3937_RS01500 0.73 -0.2 337,758 + DDA3937_RS01500 0.73 -0.3 337,758 + DDA3937_RS01500 0.73 -2.1 337,758 + DDA3937_RS01500 0.73 -1.6 337,759 - DDA3937_RS01500 0.73 +1.0 337,759 - DDA3937_RS01500 0.73 -0.3 337,759 - DDA3937_RS01500 0.73 -0.1 337,770 - DDA3937_RS01500 0.74 +0.6 337,811 + DDA3937_RS01500 0.77 +0.3 337,812 - DDA3937_RS01500 0.77 -0.3 338,015 + +1.6 338,015 + +0.1 338,015 + -0.9 338,016 - +0.0 338,025 - -2.1 338,025 - +0.6 338,113 + +0.0 338,113 + -0.2 338,113 + -0.0 338,115 + -1.1 338,115 + -1.1 338,115 + -0.5 338,115 + -1.8 338,115 + -0.7 338,116 - -0.4 338,116 - -0.1 338,116 - +0.9 338,116 - -0.5 338,182 + +1.0 338,183 - -1.6 338,194 + -1.9 338,218 + +1.6 338,218 + -1.3 338,277 - DDA3937_RS01505 0.23 -2.6 338,277 - DDA3937_RS01505 0.23 +0.0 338,381 + DDA3937_RS01505 0.48 -0.2 338,382 - DDA3937_RS01505 0.48 -2.0 338,423 + DDA3937_RS01505 0.58 -0.7 338,424 - DDA3937_RS01505 0.58 -0.9 338,571 - -1.6 338,589 - -1.6 338,594 + -0.7 338,594 + -0.7 338,594 + -1.3 338,595 - -0.5 338,595 - -0.9 338,617 - +0.5 338,617 - -0.5 338,655 + -0.6 338,655 + -0.7 338,655 + -1.0 338,655 + -0.5 338,656 - -1.6 338,656 - -0.6 338,656 - +1.2 338,660 + -1.7 338,661 - -0.1 338,671 + -1.9 338,671 + -2.5 338,671 + +0.2 338,672 - -0.8 338,691 + -0.4 338,699 - -0.6 338,707 - +0.1 338,776 + -0.0 338,777 - +0.4 338,777 - -0.6 338,802 + +0.8 338,803 - DDA3937_RS01510 0.10 +0.8 338,811 - DDA3937_RS01510 0.13 +0.3 338,940 + DDA3937_RS01510 0.60 -0.7 338,940 + DDA3937_RS01510 0.60 +1.0 338,941 - DDA3937_RS01510 0.61 -0.3 338,967 + DDA3937_RS01510 0.70 +1.0 338,967 + DDA3937_RS01510 0.70 +0.7 339,083 + +0.5 339,083 + +1.6 339,084 - +1.9 339,132 + DDA3937_RS01515 0.10 -0.2 339,132 + DDA3937_RS01515 0.10 +0.6 339,132 + DDA3937_RS01515 0.10 +1.6 339,132 + DDA3937_RS01515 0.10 +1.3 339,133 - DDA3937_RS01515 0.10 +0.9 339,133 - DDA3937_RS01515 0.10 +0.9 339,133 - DDA3937_RS01515 0.10 +0.6 339,175 + +2.6 339,176 - DDA3937_RS01515 0.15 +1.3 339,180 + DDA3937_RS01515 0.16 +1.2 339,180 + DDA3937_RS01515 0.16 +0.8 339,180 + DDA3937_RS01515 0.16 +1.1 339,180 + DDA3937_RS01515 0.16 +0.5 339,181 - DDA3937_RS01515 0.16 -0.8 339,181 - DDA3937_RS01515 0.16 +0.4 339,181 - DDA3937_RS01515 0.16 -0.3 339,181 - DDA3937_RS01515 0.16 +1.7 339,181 - DDA3937_RS01515 0.16 +1.1 339,225 + DDA3937_RS01515 0.21 +1.0 339,225 + DDA3937_RS01515 0.21 +0.3 339,226 - DDA3937_RS01515 0.21 -0.2 339,226 - DDA3937_RS01515 0.21 +0.9 339,226 - DDA3937_RS01515 0.21 +0.3 339,240 + DDA3937_RS01515 0.23 +1.6 339,240 + DDA3937_RS01515 0.23 +0.6 339,241 - DDA3937_RS01515 0.23 +1.2 339,241 - DDA3937_RS01515 0.23 +0.8 339,241 - DDA3937_RS01515 0.23 -0.2 339,241 - DDA3937_RS01515 0.23 +1.6 339,241 - DDA3937_RS01515 0.23 +0.0 339,337 + DDA3937_RS01515 0.34 +0.2 339,364 - DDA3937_RS01515 0.37 -0.1 339,364 - DDA3937_RS01515 0.37 -0.4 339,394 - DDA3937_RS01515 0.41 +0.8 339,394 - DDA3937_RS01515 0.41 -1.1 339,476 + DDA3937_RS01515 0.51 +1.2 339,476 + DDA3937_RS01515 0.51 +1.4 339,477 - DDA3937_RS01515 0.51 +0.3 339,493 + DDA3937_RS01515 0.53 +2.4
Or see this region's nucleotide sequence