Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01405 and DDA3937_RS01410 are separated by 238 nucleotides DDA3937_RS01410 and DDA3937_RS01415 are separated by 66 nucleotides DDA3937_RS01415 and DDA3937_RS01420 are separated by 219 nucleotides
DDA3937_RS01405: DDA3937_RS01405 - type II 3-dehydroquinate dehydratase, at 313,618 to 314,070
_RS01405
DDA3937_RS01410: DDA3937_RS01410 - protein-methionine-sulfoxide reductase heme-binding subunit MsrQ, at 314,309 to 314,908
_RS01410
DDA3937_RS01415: DDA3937_RS01415 - protein-methionine-sulfoxide reductase catalytic subunit MsrP, at 314,975 to 315,976
_RS01415
DDA3937_RS01420: DDA3937_RS01420 - oxidoreductase, at 316,196 to 317,182
_RS01420
Position (kb) 314
315
316 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 314.224 kb on + strand at 314.374 kb on - strand, within DDA3937_RS01410 at 314.374 kb on - strand, within DDA3937_RS01410 at 314.456 kb on - strand, within DDA3937_RS01410 at 314.456 kb on - strand, within DDA3937_RS01410 at 314.511 kb on - strand, within DDA3937_RS01410 at 314.625 kb on + strand, within DDA3937_RS01410 at 314.626 kb on - strand, within DDA3937_RS01410 at 314.626 kb on - strand, within DDA3937_RS01410 at 314.704 kb on + strand, within DDA3937_RS01410 at 314.770 kb on + strand, within DDA3937_RS01410 at 314.783 kb on - strand, within DDA3937_RS01410 at 314.887 kb on + strand at 314.887 kb on + strand at 314.887 kb on + strand at 314.887 kb on + strand at 314.887 kb on + strand at 314.887 kb on + strand at 314.888 kb on - strand at 314.888 kb on - strand at 314.888 kb on - strand at 314.888 kb on - strand at 314.888 kb on - strand at 314.888 kb on - strand at 314.960 kb on + strand at 315.006 kb on + strand at 315.089 kb on + strand, within DDA3937_RS01415 at 315.147 kb on + strand, within DDA3937_RS01415 at 315.229 kb on + strand, within DDA3937_RS01415 at 315.229 kb on + strand, within DDA3937_RS01415 at 315.229 kb on + strand, within DDA3937_RS01415 at 315.229 kb on + strand, within DDA3937_RS01415 at 315.229 kb on + strand, within DDA3937_RS01415 at 315.230 kb on - strand, within DDA3937_RS01415 at 315.230 kb on - strand, within DDA3937_RS01415 at 315.230 kb on - strand, within DDA3937_RS01415 at 315.308 kb on + strand, within DDA3937_RS01415 at 315.309 kb on - strand, within DDA3937_RS01415 at 315.309 kb on - strand, within DDA3937_RS01415 at 315.309 kb on - strand, within DDA3937_RS01415 at 315.309 kb on - strand, within DDA3937_RS01415 at 315.369 kb on + strand, within DDA3937_RS01415 at 315.375 kb on + strand, within DDA3937_RS01415 at 315.375 kb on + strand, within DDA3937_RS01415 at 315.375 kb on + strand, within DDA3937_RS01415 at 315.376 kb on - strand, within DDA3937_RS01415 at 315.433 kb on - strand, within DDA3937_RS01415 at 315.453 kb on + strand, within DDA3937_RS01415 at 315.454 kb on - strand, within DDA3937_RS01415 at 315.454 kb on - strand, within DDA3937_RS01415 at 315.555 kb on + strand, within DDA3937_RS01415 at 315.658 kb on + strand, within DDA3937_RS01415 at 315.659 kb on - strand, within DDA3937_RS01415 at 315.659 kb on - strand, within DDA3937_RS01415 at 315.708 kb on + strand, within DDA3937_RS01415 at 315.721 kb on - strand, within DDA3937_RS01415 at 315.752 kb on + strand, within DDA3937_RS01415 at 315.753 kb on - strand, within DDA3937_RS01415 at 315.753 kb on - strand, within DDA3937_RS01415 at 316.055 kb on + strand at 316.055 kb on + strand at 316.056 kb on - strand at 316.056 kb on - strand at 316.056 kb on - strand at 316.067 kb on + strand at 316.067 kb on + strand at 316.067 kb on + strand at 316.067 kb on + strand at 316.067 kb on + strand at 316.067 kb on + strand at 316.067 kb on + strand at 316.067 kb on + strand at 316.068 kb on - strand at 316.068 kb on - strand at 316.068 kb on - strand at 316.068 kb on - strand at 316.078 kb on + strand at 316.079 kb on - strand at 316.079 kb on - strand at 316.090 kb on + strand at 316.090 kb on + strand at 316.091 kb on - strand at 316.091 kb on - strand at 316.128 kb on - strand at 316.146 kb on - strand at 316.225 kb on + strand at 316.409 kb on + strand, within DDA3937_RS01420 at 316.409 kb on + strand, within DDA3937_RS01420 at 316.409 kb on + strand, within DDA3937_RS01420 at 316.409 kb on + strand, within DDA3937_RS01420 at 316.410 kb on - strand, within DDA3937_RS01420 at 316.410 kb on - strand, within DDA3937_RS01420 at 316.410 kb on - strand, within DDA3937_RS01420 at 316.414 kb on + strand, within DDA3937_RS01420 at 316.415 kb on - strand, within DDA3937_RS01420 at 316.483 kb on - strand, within DDA3937_RS01420 at 316.627 kb on - strand, within DDA3937_RS01420 at 316.668 kb on + strand, within DDA3937_RS01420 at 316.784 kb on + strand, within DDA3937_RS01420 at 316.784 kb on + strand, within DDA3937_RS01420 at 316.784 kb on + strand, within DDA3937_RS01420 at 316.784 kb on + strand, within DDA3937_RS01420 at 316.784 kb on + strand, within DDA3937_RS01420 at 316.785 kb on - strand, within DDA3937_RS01420 at 316.785 kb on - strand, within DDA3937_RS01420 at 316.785 kb on - strand, within DDA3937_RS01420 at 316.785 kb on - strand, within DDA3937_RS01420 at 316.785 kb on - strand, within DDA3937_RS01420
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 314,224 + -1.1 314,374 - DDA3937_RS01410 0.11 +0.0 314,374 - DDA3937_RS01410 0.11 -0.5 314,456 - DDA3937_RS01410 0.24 -0.5 314,456 - DDA3937_RS01410 0.24 -0.2 314,511 - DDA3937_RS01410 0.34 -1.4 314,625 + DDA3937_RS01410 0.53 -0.4 314,626 - DDA3937_RS01410 0.53 -0.6 314,626 - DDA3937_RS01410 0.53 -2.9 314,704 + DDA3937_RS01410 0.66 +0.0 314,770 + DDA3937_RS01410 0.77 +0.7 314,783 - DDA3937_RS01410 0.79 +0.0 314,887 + -0.7 314,887 + +0.3 314,887 + +2.6 314,887 + -1.1 314,887 + -0.8 314,887 + -0.3 314,888 - +2.0 314,888 - -0.6 314,888 - -1.0 314,888 - -1.0 314,888 - -1.5 314,888 - +1.4 314,960 + -0.2 315,006 + -0.1 315,089 + DDA3937_RS01415 0.11 -0.4 315,147 + DDA3937_RS01415 0.17 +0.4 315,229 + DDA3937_RS01415 0.25 +0.0 315,229 + DDA3937_RS01415 0.25 -0.5 315,229 + DDA3937_RS01415 0.25 +0.2 315,229 + DDA3937_RS01415 0.25 -0.6 315,229 + DDA3937_RS01415 0.25 -1.3 315,230 - DDA3937_RS01415 0.25 -0.5 315,230 - DDA3937_RS01415 0.25 +0.0 315,230 - DDA3937_RS01415 0.25 -0.3 315,308 + DDA3937_RS01415 0.33 -0.5 315,309 - DDA3937_RS01415 0.33 -1.5 315,309 - DDA3937_RS01415 0.33 +0.0 315,309 - DDA3937_RS01415 0.33 -0.6 315,309 - DDA3937_RS01415 0.33 -0.3 315,369 + DDA3937_RS01415 0.39 -0.5 315,375 + DDA3937_RS01415 0.40 -1.3 315,375 + DDA3937_RS01415 0.40 +2.0 315,375 + DDA3937_RS01415 0.40 -0.6 315,376 - DDA3937_RS01415 0.40 +0.6 315,433 - DDA3937_RS01415 0.46 -0.2 315,453 + DDA3937_RS01415 0.48 +0.1 315,454 - DDA3937_RS01415 0.48 -1.2 315,454 - DDA3937_RS01415 0.48 -0.7 315,555 + DDA3937_RS01415 0.58 +0.6 315,658 + DDA3937_RS01415 0.68 -0.1 315,659 - DDA3937_RS01415 0.68 +0.2 315,659 - DDA3937_RS01415 0.68 +0.5 315,708 + DDA3937_RS01415 0.73 -0.6 315,721 - DDA3937_RS01415 0.74 -1.5 315,752 + DDA3937_RS01415 0.78 -0.4 315,753 - DDA3937_RS01415 0.78 -0.3 315,753 - DDA3937_RS01415 0.78 +0.0 316,055 + +0.0 316,055 + -0.1 316,056 - +0.1 316,056 - +0.7 316,056 - -0.4 316,067 + -0.1 316,067 + +0.8 316,067 + -0.4 316,067 + +0.0 316,067 + +0.0 316,067 + -0.0 316,067 + -1.0 316,067 + -0.3 316,068 - -0.5 316,068 - +0.4 316,068 - -0.4 316,068 - +0.6 316,078 + -0.3 316,079 - -0.3 316,079 - +0.2 316,090 + -0.2 316,090 + +0.2 316,091 - -1.8 316,091 - +0.5 316,128 - +0.3 316,146 - -0.5 316,225 + -0.2 316,409 + DDA3937_RS01420 0.22 -0.6 316,409 + DDA3937_RS01420 0.22 +0.3 316,409 + DDA3937_RS01420 0.22 +0.3 316,409 + DDA3937_RS01420 0.22 -0.5 316,410 - DDA3937_RS01420 0.22 -0.8 316,410 - DDA3937_RS01420 0.22 -1.5 316,410 - DDA3937_RS01420 0.22 -0.4 316,414 + DDA3937_RS01420 0.22 -0.5 316,415 - DDA3937_RS01420 0.22 +0.2 316,483 - DDA3937_RS01420 0.29 -0.6 316,627 - DDA3937_RS01420 0.44 -0.6 316,668 + DDA3937_RS01420 0.48 +0.9 316,784 + DDA3937_RS01420 0.60 -0.7 316,784 + DDA3937_RS01420 0.60 -0.7 316,784 + DDA3937_RS01420 0.60 +1.8 316,784 + DDA3937_RS01420 0.60 -0.4 316,784 + DDA3937_RS01420 0.60 -1.5 316,785 - DDA3937_RS01420 0.60 -1.5 316,785 - DDA3937_RS01420 0.60 +0.0 316,785 - DDA3937_RS01420 0.60 -2.3 316,785 - DDA3937_RS01420 0.60 +0.6 316,785 - DDA3937_RS01420 0.60 +0.2
Or see this region's nucleotide sequence