Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01240 and DDA3937_RS01245 are separated by 108 nucleotides DDA3937_RS01245 and DDA3937_RS01250 are separated by 257 nucleotides DDA3937_RS01250 and DDA3937_RS01255 are separated by 76 nucleotides DDA3937_RS01255 and DDA3937_RS01260 are separated by 8 nucleotides
DDA3937_RS01240: DDA3937_RS01240 - 23S ribosomal RNA, at 280,542 to 283,449
_RS01240
DDA3937_RS01245: DDA3937_RS01245 - 5S ribosomal RNA, at 283,558 to 283,673
_RS01245
DDA3937_RS01250: DDA3937_RS01250 - molybdopterin-guanine dinucleotide biosynthesis protein MobB, at 283,931 to 284,167
_RS01250
DDA3937_RS01255: DDA3937_RS01255 - amino acid ABC transporter ATP-binding protein, at 284,244 to 285,005
_RS01255
DDA3937_RS01260: DDA3937_RS01260 - amino acid ABC transporter permease, at 285,014 to 286,108
_RS01260
Position (kb) 283
284
285 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 283.678 kb on + strand at 283.680 kb on + strand at 283.975 kb on + strand, within DDA3937_RS01250 at 283.979 kb on + strand, within DDA3937_RS01250 at 284.170 kb on + strand at 284.241 kb on + strand at 284.245 kb on + strand at 284.246 kb on - strand at 284.246 kb on - strand at 284.254 kb on - strand at 284.276 kb on + strand at 284.276 kb on + strand at 284.277 kb on - strand at 284.572 kb on + strand, within DDA3937_RS01255 at 284.611 kb on + strand, within DDA3937_RS01255 at 284.612 kb on - strand, within DDA3937_RS01255 at 284.612 kb on - strand, within DDA3937_RS01255 at 284.612 kb on - strand, within DDA3937_RS01255 at 284.676 kb on - strand, within DDA3937_RS01255 at 284.676 kb on - strand, within DDA3937_RS01255 at 284.756 kb on + strand, within DDA3937_RS01255 at 284.790 kb on + strand, within DDA3937_RS01255 at 284.790 kb on + strand, within DDA3937_RS01255 at 284.831 kb on + strand, within DDA3937_RS01255 at 284.882 kb on + strand, within DDA3937_RS01255 at 284.882 kb on + strand at 284.882 kb on + strand, within DDA3937_RS01255 at 284.882 kb on + strand, within DDA3937_RS01255 at 284.883 kb on - strand, within DDA3937_RS01255 at 284.883 kb on - strand, within DDA3937_RS01255 at 284.912 kb on + strand, within DDA3937_RS01255 at 284.913 kb on - strand, within DDA3937_RS01255 at 284.922 kb on + strand, within DDA3937_RS01255 at 284.922 kb on + strand, within DDA3937_RS01255 at 284.923 kb on - strand at 284.938 kb on + strand at 284.945 kb on + strand at 284.945 kb on + strand at 284.945 kb on + strand at 284.946 kb on - strand at 284.946 kb on - strand at 284.946 kb on - strand at 284.972 kb on - strand at 285.050 kb on + strand at 285.061 kb on + strand at 285.061 kb on + strand at 285.110 kb on + strand at 285.110 kb on + strand at 285.110 kb on + strand at 285.110 kb on + strand at 285.111 kb on - strand at 285.111 kb on - strand at 285.111 kb on - strand at 285.111 kb on - strand at 285.114 kb on + strand at 285.114 kb on + strand at 285.114 kb on + strand at 285.114 kb on + strand at 285.114 kb on + strand at 285.114 kb on + strand at 285.114 kb on + strand at 285.114 kb on + strand at 285.114 kb on + strand at 285.114 kb on + strand at 285.114 kb on + strand at 285.115 kb on - strand at 285.115 kb on - strand at 285.115 kb on - strand at 285.115 kb on - strand at 285.115 kb on - strand at 285.115 kb on - strand at 285.115 kb on - strand at 285.115 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 283,678 + -0.8 283,680 + -1.5 283,975 + DDA3937_RS01250 0.19 -0.8 283,979 + DDA3937_RS01250 0.20 -2.5 284,170 + -0.1 284,241 + -0.2 284,245 + +0.8 284,246 - -0.1 284,246 - -0.4 284,254 - -0.5 284,276 + +0.7 284,276 + +0.8 284,277 - +1.3 284,572 + DDA3937_RS01255 0.43 +0.0 284,611 + DDA3937_RS01255 0.48 +0.6 284,612 - DDA3937_RS01255 0.48 +0.1 284,612 - DDA3937_RS01255 0.48 +0.5 284,612 - DDA3937_RS01255 0.48 +0.7 284,676 - DDA3937_RS01255 0.57 -0.1 284,676 - DDA3937_RS01255 0.57 -1.0 284,756 + DDA3937_RS01255 0.67 -0.0 284,790 + DDA3937_RS01255 0.72 +0.3 284,790 + DDA3937_RS01255 0.72 +0.3 284,831 + DDA3937_RS01255 0.77 -0.2 284,882 + DDA3937_RS01255 0.84 +0.2 284,882 + +0.5 284,882 + DDA3937_RS01255 0.84 -0.3 284,882 + DDA3937_RS01255 0.84 -0.5 284,883 - DDA3937_RS01255 0.84 +0.3 284,883 - DDA3937_RS01255 0.84 +0.0 284,912 + DDA3937_RS01255 0.88 -0.1 284,913 - DDA3937_RS01255 0.88 -0.2 284,922 + DDA3937_RS01255 0.89 +0.1 284,922 + DDA3937_RS01255 0.89 -1.1 284,923 - +1.5 284,938 + -0.7 284,945 + +0.0 284,945 + +0.6 284,945 + -0.5 284,946 - -0.1 284,946 - -1.0 284,946 - -0.3 284,972 - +0.8 285,050 + -1.0 285,061 + -0.1 285,061 + -0.6 285,110 + +0.3 285,110 + +0.2 285,110 + -2.0 285,110 + -0.4 285,111 - +0.4 285,111 - -0.3 285,111 - +0.4 285,111 - -0.0 285,114 + +1.0 285,114 + -0.8 285,114 + +0.3 285,114 + -1.9 285,114 + -1.1 285,114 + +0.3 285,114 + -1.3 285,114 + +0.0 285,114 + -2.9 285,114 + -1.3 285,114 + -0.0 285,115 - -0.3 285,115 - +0.2 285,115 - -1.1 285,115 - -0.3 285,115 - -0.5 285,115 - -0.4 285,115 - -0.3 285,115 - -0.5
Or see this region's nucleotide sequence