Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS01220

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDDA3937_RS01215 and DDA3937_RS01220 are separated by 15 nucleotidesDDA3937_RS01220 and DDA3937_RS01225 are separated by 599 nucleotides DDA3937_RS01215: DDA3937_RS01215 - phosphoribosylamine--glycine ligase, at 275,011 to 276,300 _RS01215 DDA3937_RS01220: DDA3937_RS01220 - bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase, at 276,316 to 277,905 _RS01220 DDA3937_RS01225: DDA3937_RS01225 - 16S ribosomal RNA, at 278,505 to 280,046 _RS01225 Position (kb) 276 277 278Strain fitness (log2 ratio) -2 -1 0 1 2at 275.377 kb on + strand, within DDA3937_RS01215at 275.378 kb on - strand, within DDA3937_RS01215at 275.378 kb on - strand, within DDA3937_RS01215at 275.504 kb on + strand, within DDA3937_RS01215at 275.504 kb on + strand, within DDA3937_RS01215at 275.504 kb on + strand, within DDA3937_RS01215at 275.504 kb on + strand, within DDA3937_RS01215at 275.504 kb on + strand, within DDA3937_RS01215at 275.504 kb on + strand, within DDA3937_RS01215at 275.505 kb on - strand, within DDA3937_RS01215at 275.505 kb on - strand, within DDA3937_RS01215at 275.547 kb on + strand, within DDA3937_RS01215at 275.547 kb on + strand, within DDA3937_RS01215at 275.548 kb on - strand, within DDA3937_RS01215at 275.548 kb on - strand, within DDA3937_RS01215at 275.548 kb on - strand, within DDA3937_RS01215at 275.603 kb on + strand, within DDA3937_RS01215at 275.603 kb on + strand, within DDA3937_RS01215at 275.603 kb on + strand, within DDA3937_RS01215at 275.710 kb on - strand, within DDA3937_RS01215at 275.900 kb on + strand, within DDA3937_RS01215at 275.900 kb on + strand, within DDA3937_RS01215at 275.901 kb on - strand, within DDA3937_RS01215at 275.901 kb on - strand, within DDA3937_RS01215at 275.901 kb on - strand, within DDA3937_RS01215at 275.901 kb on - strand, within DDA3937_RS01215at 275.936 kb on + strand, within DDA3937_RS01215at 275.952 kb on + strand, within DDA3937_RS01215at 275.953 kb on - strand, within DDA3937_RS01215at 276.096 kb on + strand, within DDA3937_RS01215at 276.097 kb on - strand, within DDA3937_RS01215at 276.097 kb on - strand, within DDA3937_RS01215at 276.215 kb on + strandat 276.215 kb on + strandat 276.215 kb on + strandat 276.216 kb on - strandat 276.285 kb on + strandat 276.294 kb on + strandat 276.295 kb on - strandat 276.307 kb on - strandat 276.307 kb on - strandat 276.317 kb on + strandat 276.318 kb on - strandat 276.318 kb on - strandat 276.433 kb on + strandat 276.591 kb on + strand, within DDA3937_RS01220at 276.591 kb on + strand, within DDA3937_RS01220at 276.591 kb on + strand, within DDA3937_RS01220at 276.591 kb on + strand, within DDA3937_RS01220at 276.591 kb on + strand, within DDA3937_RS01220at 276.591 kb on + strand, within DDA3937_RS01220at 276.591 kb on + strand, within DDA3937_RS01220at 276.625 kb on - strand, within DDA3937_RS01220at 276.820 kb on + strand, within DDA3937_RS01220at 276.820 kb on + strand, within DDA3937_RS01220at 276.821 kb on - strand, within DDA3937_RS01220at 276.984 kb on - strand, within DDA3937_RS01220at 276.984 kb on - strand, within DDA3937_RS01220at 276.995 kb on + strand, within DDA3937_RS01220at 277.121 kb on + strand, within DDA3937_RS01220at 277.155 kb on + strand, within DDA3937_RS01220at 277.155 kb on + strand, within DDA3937_RS01220at 277.160 kb on - strand, within DDA3937_RS01220at 277.186 kb on + strand, within DDA3937_RS01220at 277.187 kb on - strand, within DDA3937_RS01220at 277.187 kb on - strand, within DDA3937_RS01220at 277.189 kb on - strand, within DDA3937_RS01220at 277.190 kb on + strand, within DDA3937_RS01220at 277.190 kb on + strand, within DDA3937_RS01220at 277.190 kb on + strand, within DDA3937_RS01220at 277.190 kb on + strand, within DDA3937_RS01220at 277.190 kb on + strand, within DDA3937_RS01220at 277.190 kb on + strand, within DDA3937_RS01220at 277.191 kb on - strand, within DDA3937_RS01220at 277.191 kb on - strand, within DDA3937_RS01220at 277.191 kb on - strand, within DDA3937_RS01220at 277.191 kb on - strand, within DDA3937_RS01220at 277.191 kb on - strand, within DDA3937_RS01220at 277.317 kb on + strand, within DDA3937_RS01220at 277.318 kb on - strand, within DDA3937_RS01220at 277.328 kb on + strand, within DDA3937_RS01220at 277.328 kb on + strand, within DDA3937_RS01220at 277.329 kb on - strand, within DDA3937_RS01220at 277.400 kb on + strand, within DDA3937_RS01220at 277.401 kb on - strand, within DDA3937_RS01220at 277.401 kb on - strand, within DDA3937_RS01220at 277.440 kb on + strand, within DDA3937_RS01220at 277.440 kb on + strand, within DDA3937_RS01220at 277.440 kb on + strand, within DDA3937_RS01220at 277.440 kb on + strand, within DDA3937_RS01220at 277.440 kb on + strand, within DDA3937_RS01220at 277.440 kb on + strand, within DDA3937_RS01220at 277.440 kb on + strand, within DDA3937_RS01220at 277.440 kb on + strand, within DDA3937_RS01220at 277.440 kb on + strand, within DDA3937_RS01220at 277.440 kb on + strand, within DDA3937_RS01220at 277.440 kb on + strand, within DDA3937_RS01220at 277.440 kb on + strand, within DDA3937_RS01220at 277.441 kb on - strand, within DDA3937_RS01220at 277.441 kb on - strand, within DDA3937_RS01220at 277.441 kb on - strand, within DDA3937_RS01220at 277.441 kb on - strand, within DDA3937_RS01220at 277.441 kb on - strand, within DDA3937_RS01220at 277.448 kb on + strand, within DDA3937_RS01220at 277.448 kb on + strand, within DDA3937_RS01220at 277.448 kb on + strandat 277.449 kb on - strand, within DDA3937_RS01220at 277.449 kb on - strand, within DDA3937_RS01220at 277.461 kb on + strand, within DDA3937_RS01220at 277.510 kb on - strand, within DDA3937_RS01220at 277.510 kb on - strand, within DDA3937_RS01220at 277.510 kb on - strand, within DDA3937_RS01220at 277.603 kb on + strand, within DDA3937_RS01220at 277.681 kb on + strand, within DDA3937_RS01220at 277.681 kb on + strand, within DDA3937_RS01220at 277.681 kb on + strand, within DDA3937_RS01220at 277.681 kb on + strand, within DDA3937_RS01220at 277.682 kb on - strand, within DDA3937_RS01220at 277.682 kb on - strand, within DDA3937_RS01220at 277.682 kb on - strand, within DDA3937_RS01220at 277.682 kb on - strand, within DDA3937_RS01220at 277.682 kb on - strand, within DDA3937_RS01220at 277.682 kb on - strand, within DDA3937_RS01220at 277.682 kb on - strand, within DDA3937_RS01220at 277.682 kb on - strand, within DDA3937_RS01220at 277.865 kb on - strandat 277.926 kb on + strandat 277.926 kb on + strandat 277.926 kb on + strandat 277.927 kb on - strandat 277.927 kb on - strandat 277.927 kb on - strandat 277.927 kb on - strandat 277.927 kb on - strandat 277.927 kb on - strandat 277.927 kb on - strandat 277.927 kb on - strandat 277.927 kb on - strandat 277.934 kb on + strandat 277.934 kb on + strandat 277.934 kb on + strandat 277.935 kb on - strandat 277.950 kb on - strandat 277.957 kb on + strandat 277.958 kb on - strandat 277.958 kb on - strandat 277.971 kb on + strandat 277.971 kb on + strandat 277.972 kb on - strandat 277.972 kb on - strandat 277.981 kb on + strandat 278.008 kb on - strandat 278.023 kb on - strandat 278.033 kb on + strandat 278.033 kb on + strandat 278.033 kb on + strandat 278.033 kb on + strandat 278.034 kb on - strandat 278.034 kb on - strandat 278.051 kb on - strandat 278.051 kb on - strandat 278.095 kb on + strandat 278.095 kb on + strandat 278.096 kb on - strandat 278.096 kb on - strandat 278.121 kb on + strandat 278.122 kb on - strandat 278.126 kb on + strandat 278.126 kb on + strandat 278.127 kb on - strandat 278.128 kb on + strandat 278.128 kb on + strandat 278.128 kb on + strandat 278.129 kb on - strandat 278.129 kb on - strandat 278.129 kb on - strandat 278.129 kb on - strandat 278.129 kb on - strandat 278.170 kb on - strandat 278.208 kb on - strandat 278.210 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
275,377 + DDA3937_RS01215 0.28 +0.6
275,378 - DDA3937_RS01215 0.28 +1.4
275,378 - DDA3937_RS01215 0.28 -0.8
275,504 + DDA3937_RS01215 0.38 -0.3
275,504 + DDA3937_RS01215 0.38 +0.0
275,504 + DDA3937_RS01215 0.38 -0.0
275,504 + DDA3937_RS01215 0.38 +0.2
275,504 + DDA3937_RS01215 0.38 -1.0
275,504 + DDA3937_RS01215 0.38 -0.3
275,505 - DDA3937_RS01215 0.38 -0.0
275,505 - DDA3937_RS01215 0.38 +0.3
275,547 + DDA3937_RS01215 0.42 +0.5
275,547 + DDA3937_RS01215 0.42 +0.7
275,548 - DDA3937_RS01215 0.42 +0.2
275,548 - DDA3937_RS01215 0.42 -2.7
275,548 - DDA3937_RS01215 0.42 -1.1
275,603 + DDA3937_RS01215 0.46 -0.1
275,603 + DDA3937_RS01215 0.46 -0.4
275,603 + DDA3937_RS01215 0.46 +0.2
275,710 - DDA3937_RS01215 0.54 +1.0
275,900 + DDA3937_RS01215 0.69 -0.3
275,900 + DDA3937_RS01215 0.69 -0.1
275,901 - DDA3937_RS01215 0.69 -0.5
275,901 - DDA3937_RS01215 0.69 +0.0
275,901 - DDA3937_RS01215 0.69 +0.2
275,901 - DDA3937_RS01215 0.69 -0.1
275,936 + DDA3937_RS01215 0.72 +1.8
275,952 + DDA3937_RS01215 0.73 +0.8
275,953 - DDA3937_RS01215 0.73 +0.0
276,096 + DDA3937_RS01215 0.84 +1.0
276,097 - DDA3937_RS01215 0.84 +0.1
276,097 - DDA3937_RS01215 0.84 +0.4
276,215 + -1.3
276,215 + -1.1
276,215 + -0.4
276,216 - -0.3
276,285 + -0.5
276,294 + -0.3
276,295 - +0.1
276,307 - +1.0
276,307 - +0.5
276,317 + +1.2
276,318 - -1.6
276,318 - +0.6
276,433 + -2.3
276,591 + DDA3937_RS01220 0.17 +0.4
276,591 + DDA3937_RS01220 0.17 -0.0
276,591 + DDA3937_RS01220 0.17 +0.1
276,591 + DDA3937_RS01220 0.17 +0.4
276,591 + DDA3937_RS01220 0.17 +0.4
276,591 + DDA3937_RS01220 0.17 -0.6
276,591 + DDA3937_RS01220 0.17 +0.2
276,625 - DDA3937_RS01220 0.19 -0.2
276,820 + DDA3937_RS01220 0.32 +0.3
276,820 + DDA3937_RS01220 0.32 -1.5
276,821 - DDA3937_RS01220 0.32 -0.4
276,984 - DDA3937_RS01220 0.42 +0.7
276,984 - DDA3937_RS01220 0.42 -0.3
276,995 + DDA3937_RS01220 0.43 +0.2
277,121 + DDA3937_RS01220 0.51 -0.2
277,155 + DDA3937_RS01220 0.53 -0.7
277,155 + DDA3937_RS01220 0.53 -0.5
277,160 - DDA3937_RS01220 0.53 +0.5
277,186 + DDA3937_RS01220 0.55 +0.4
277,187 - DDA3937_RS01220 0.55 -0.1
277,187 - DDA3937_RS01220 0.55 +0.3
277,189 - DDA3937_RS01220 0.55 -0.0
277,190 + DDA3937_RS01220 0.55 +0.1
277,190 + DDA3937_RS01220 0.55 -0.2
277,190 + DDA3937_RS01220 0.55 +0.0
277,190 + DDA3937_RS01220 0.55 -0.9
277,190 + DDA3937_RS01220 0.55 -0.3
277,190 + DDA3937_RS01220 0.55 -1.5
277,191 - DDA3937_RS01220 0.55 -0.8
277,191 - DDA3937_RS01220 0.55 -0.5
277,191 - DDA3937_RS01220 0.55 -0.2
277,191 - DDA3937_RS01220 0.55 -0.6
277,191 - DDA3937_RS01220 0.55 +0.2
277,317 + DDA3937_RS01220 0.63 +0.6
277,318 - DDA3937_RS01220 0.63 +0.3
277,328 + DDA3937_RS01220 0.64 -1.4
277,328 + DDA3937_RS01220 0.64 +0.5
277,329 - DDA3937_RS01220 0.64 -1.5
277,400 + DDA3937_RS01220 0.68 -0.4
277,401 - DDA3937_RS01220 0.68 -0.1
277,401 - DDA3937_RS01220 0.68 -1.0
277,440 + DDA3937_RS01220 0.71 -0.1
277,440 + DDA3937_RS01220 0.71 -0.4
277,440 + DDA3937_RS01220 0.71 +0.7
277,440 + DDA3937_RS01220 0.71 +1.5
277,440 + DDA3937_RS01220 0.71 +0.6
277,440 + DDA3937_RS01220 0.71 +0.3
277,440 + DDA3937_RS01220 0.71 -0.2
277,440 + DDA3937_RS01220 0.71 -0.2
277,440 + DDA3937_RS01220 0.71 -0.1
277,440 + DDA3937_RS01220 0.71 -1.5
277,440 + DDA3937_RS01220 0.71 -0.6
277,440 + DDA3937_RS01220 0.71 -0.2
277,441 - DDA3937_RS01220 0.71 -1.0
277,441 - DDA3937_RS01220 0.71 -1.8
277,441 - DDA3937_RS01220 0.71 +0.1
277,441 - DDA3937_RS01220 0.71 -0.3
277,441 - DDA3937_RS01220 0.71 -0.3
277,448 + DDA3937_RS01220 0.71 -0.3
277,448 + DDA3937_RS01220 0.71 -0.7
277,448 + +0.5
277,449 - DDA3937_RS01220 0.71 +0.0
277,449 - DDA3937_RS01220 0.71 -0.4
277,461 + DDA3937_RS01220 0.72 -2.0
277,510 - DDA3937_RS01220 0.75 +0.7
277,510 - DDA3937_RS01220 0.75 +1.4
277,510 - DDA3937_RS01220 0.75 -1.0
277,603 + DDA3937_RS01220 0.81 -0.3
277,681 + DDA3937_RS01220 0.86 +0.6
277,681 + DDA3937_RS01220 0.86 -2.7
277,681 + DDA3937_RS01220 0.86 -0.5
277,681 + DDA3937_RS01220 0.86 -0.3
277,682 - DDA3937_RS01220 0.86 +0.0
277,682 - DDA3937_RS01220 0.86 +0.3
277,682 - DDA3937_RS01220 0.86 -0.1
277,682 - DDA3937_RS01220 0.86 -0.2
277,682 - DDA3937_RS01220 0.86 -0.3
277,682 - DDA3937_RS01220 0.86 +0.0
277,682 - DDA3937_RS01220 0.86 -0.3
277,682 - DDA3937_RS01220 0.86 +0.8
277,865 - -0.8
277,926 + -1.3
277,926 + +0.2
277,926 + -0.1
277,927 - +0.1
277,927 - -0.2
277,927 - -2.0
277,927 - +1.0
277,927 - +1.0
277,927 - +0.8
277,927 - -0.9
277,927 - -0.7
277,927 - -2.4
277,934 + +0.3
277,934 + +0.9
277,934 + +1.0
277,935 - -0.3
277,950 - +0.0
277,957 + +0.2
277,958 - -0.3
277,958 - +0.4
277,971 + -0.5
277,971 + -0.0
277,972 - -0.6
277,972 - -0.4
277,981 + -2.3
278,008 - -0.8
278,023 - -0.6
278,033 + +0.3
278,033 + +1.0
278,033 + +0.5
278,033 + -0.3
278,034 - -1.1
278,034 - +0.0
278,051 - -0.3
278,051 - +0.2
278,095 + +0.3
278,095 + +1.0
278,096 - -1.3
278,096 - -1.2
278,121 + -0.4
278,122 - +0.4
278,126 + -0.5
278,126 + -1.2
278,127 - +0.8
278,128 + -0.8
278,128 + +0.3
278,128 + +1.0
278,129 - -0.7
278,129 - +0.7
278,129 - -1.0
278,129 - +0.2
278,129 - -0.2
278,170 - -1.4
278,208 - -0.1
278,210 - -0.7

Or see this region's nucleotide sequence