Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01190 and DDA3937_RS01195 overlap by 1 nucleotides DDA3937_RS01195 and DDA3937_RS01200 are separated by 91 nucleotides DDA3937_RS01200 and DDA3937_RS01205 are separated by 187 nucleotides DDA3937_RS01205 and DDA3937_RS01210 are separated by 4 nucleotides
DDA3937_RS01190: DDA3937_RS01190 - uroporphyrinogen decarboxylase, at 271,322 to 272,395
_RS01190
DDA3937_RS01195: DDA3937_RS01195 - deoxyribonuclease V, at 272,395 to 273,069
_RS01195
DDA3937_RS01200: DDA3937_RS01200 - YjaG family protein, at 273,161 to 273,751
_RS01200
DDA3937_RS01205: DDA3937_RS01205 - DNA-binding protein HU-alpha, at 273,939 to 274,211
_RS01205
DDA3937_RS01210: DDA3937_RS01210 - DUF1481 domain-containing protein, at 274,216 to 274,926
_RS01210
Position (kb) 273
274 Strain fitness (log2 ratio) -2
-1
0
1
2 at 272.400 kb on + strand at 272.578 kb on + strand, within DDA3937_RS01195 at 272.601 kb on + strand, within DDA3937_RS01195 at 272.601 kb on + strand, within DDA3937_RS01195 at 272.602 kb on - strand, within DDA3937_RS01195 at 272.611 kb on + strand, within DDA3937_RS01195 at 272.611 kb on + strand, within DDA3937_RS01195 at 272.611 kb on + strand, within DDA3937_RS01195 at 272.611 kb on + strand, within DDA3937_RS01195 at 272.611 kb on + strand, within DDA3937_RS01195 at 272.611 kb on + strand, within DDA3937_RS01195 at 272.611 kb on + strand, within DDA3937_RS01195 at 272.611 kb on + strand, within DDA3937_RS01195 at 272.611 kb on + strand, within DDA3937_RS01195 at 272.611 kb on + strand, within DDA3937_RS01195 at 272.611 kb on + strand at 272.612 kb on - strand, within DDA3937_RS01195 at 272.612 kb on - strand, within DDA3937_RS01195 at 272.612 kb on - strand, within DDA3937_RS01195 at 272.612 kb on - strand, within DDA3937_RS01195 at 272.612 kb on - strand, within DDA3937_RS01195 at 272.612 kb on - strand, within DDA3937_RS01195 at 272.612 kb on - strand, within DDA3937_RS01195 at 272.612 kb on - strand, within DDA3937_RS01195 at 272.613 kb on + strand, within DDA3937_RS01195 at 272.613 kb on + strand, within DDA3937_RS01195 at 272.715 kb on - strand, within DDA3937_RS01195 at 272.715 kb on - strand, within DDA3937_RS01195 at 272.756 kb on + strand, within DDA3937_RS01195 at 272.756 kb on + strand, within DDA3937_RS01195 at 273.067 kb on + strand at 273.068 kb on - strand at 273.068 kb on - strand at 273.072 kb on + strand at 273.073 kb on - strand at 273.104 kb on + strand at 273.104 kb on + strand at 273.105 kb on - strand at 273.105 kb on - strand at 273.105 kb on - strand at 273.106 kb on + strand at 273.107 kb on - strand at 273.144 kb on + strand at 273.144 kb on + strand at 273.145 kb on - strand at 273.145 kb on - strand at 273.145 kb on - strand at 273.145 kb on - strand at 273.147 kb on + strand at 273.147 kb on + strand at 273.148 kb on - strand at 273.155 kb on + strand at 273.165 kb on + strand at 273.166 kb on - strand at 273.170 kb on - strand at 273.217 kb on + strand at 273.217 kb on + strand at 273.218 kb on - strand at 273.218 kb on - strand at 273.218 kb on - strand at 273.223 kb on + strand, within DDA3937_RS01200 at 273.244 kb on + strand, within DDA3937_RS01200 at 273.244 kb on + strand, within DDA3937_RS01200 at 273.244 kb on + strand, within DDA3937_RS01200 at 273.244 kb on + strand, within DDA3937_RS01200 at 273.244 kb on + strand, within DDA3937_RS01200 at 273.244 kb on + strand, within DDA3937_RS01200 at 273.244 kb on + strand, within DDA3937_RS01200 at 273.244 kb on + strand, within DDA3937_RS01200 at 273.244 kb on + strand, within DDA3937_RS01200 at 273.244 kb on + strand, within DDA3937_RS01200 at 273.244 kb on + strand, within DDA3937_RS01200 at 273.244 kb on + strand, within DDA3937_RS01200 at 273.244 kb on + strand, within DDA3937_RS01200 at 273.244 kb on + strand, within DDA3937_RS01200 at 273.244 kb on + strand, within DDA3937_RS01200 at 273.244 kb on + strand, within DDA3937_RS01200 at 273.244 kb on + strand, within DDA3937_RS01200 at 273.244 kb on + strand, within DDA3937_RS01200 at 273.244 kb on + strand, within DDA3937_RS01200 at 273.244 kb on + strand, within DDA3937_RS01200 at 273.244 kb on + strand, within DDA3937_RS01200 at 273.244 kb on + strand, within DDA3937_RS01200 at 273.245 kb on - strand, within DDA3937_RS01200 at 273.245 kb on - strand, within DDA3937_RS01200 at 273.245 kb on - strand at 273.245 kb on - strand, within DDA3937_RS01200 at 273.245 kb on - strand, within DDA3937_RS01200 at 273.245 kb on - strand, within DDA3937_RS01200 at 273.245 kb on - strand, within DDA3937_RS01200 at 273.245 kb on - strand, within DDA3937_RS01200 at 273.245 kb on - strand, within DDA3937_RS01200 at 273.245 kb on - strand, within DDA3937_RS01200 at 273.245 kb on - strand, within DDA3937_RS01200 at 273.245 kb on - strand, within DDA3937_RS01200 at 273.245 kb on - strand, within DDA3937_RS01200 at 273.245 kb on - strand, within DDA3937_RS01200 at 273.257 kb on + strand, within DDA3937_RS01200 at 273.257 kb on + strand, within DDA3937_RS01200 at 273.257 kb on + strand, within DDA3937_RS01200 at 273.257 kb on + strand, within DDA3937_RS01200 at 273.257 kb on + strand, within DDA3937_RS01200 at 273.258 kb on - strand, within DDA3937_RS01200 at 273.258 kb on - strand, within DDA3937_RS01200 at 273.258 kb on - strand, within DDA3937_RS01200 at 273.414 kb on - strand, within DDA3937_RS01200 at 273.422 kb on + strand, within DDA3937_RS01200 at 273.422 kb on + strand, within DDA3937_RS01200 at 273.422 kb on + strand, within DDA3937_RS01200 at 273.422 kb on + strand, within DDA3937_RS01200 at 273.422 kb on + strand, within DDA3937_RS01200 at 273.422 kb on + strand, within DDA3937_RS01200 at 273.422 kb on + strand, within DDA3937_RS01200 at 273.423 kb on - strand, within DDA3937_RS01200 at 273.423 kb on - strand, within DDA3937_RS01200 at 273.423 kb on - strand, within DDA3937_RS01200 at 273.423 kb on - strand, within DDA3937_RS01200 at 273.423 kb on - strand, within DDA3937_RS01200 at 273.423 kb on - strand, within DDA3937_RS01200 at 273.423 kb on - strand, within DDA3937_RS01200 at 273.429 kb on + strand, within DDA3937_RS01200 at 273.429 kb on + strand, within DDA3937_RS01200 at 273.429 kb on + strand, within DDA3937_RS01200 at 273.429 kb on + strand, within DDA3937_RS01200 at 273.429 kb on + strand, within DDA3937_RS01200 at 273.429 kb on + strand, within DDA3937_RS01200 at 273.430 kb on - strand, within DDA3937_RS01200 at 273.430 kb on - strand, within DDA3937_RS01200 at 273.430 kb on - strand, within DDA3937_RS01200 at 273.430 kb on - strand, within DDA3937_RS01200 at 273.430 kb on - strand, within DDA3937_RS01200 at 273.430 kb on - strand, within DDA3937_RS01200 at 273.430 kb on - strand, within DDA3937_RS01200 at 273.431 kb on + strand, within DDA3937_RS01200 at 273.432 kb on - strand, within DDA3937_RS01200 at 273.684 kb on + strand, within DDA3937_RS01200 at 273.684 kb on + strand, within DDA3937_RS01200 at 273.685 kb on - strand, within DDA3937_RS01200 at 273.685 kb on - strand, within DDA3937_RS01200 at 273.685 kb on - strand, within DDA3937_RS01200 at 273.722 kb on - strand at 273.725 kb on - strand at 273.743 kb on + strand at 273.744 kb on - strand at 273.744 kb on - strand at 273.769 kb on + strand at 273.770 kb on - strand at 273.792 kb on + strand at 273.793 kb on - strand at 273.821 kb on + strand at 273.861 kb on + strand at 273.879 kb on + strand at 273.879 kb on + strand at 273.881 kb on + strand at 274.209 kb on + strand at 274.210 kb on - strand at 274.323 kb on + strand, within DDA3937_RS01210 at 274.324 kb on - strand, within DDA3937_RS01210 at 274.324 kb on - strand, within DDA3937_RS01210 at 274.324 kb on - strand, within DDA3937_RS01210 at 274.324 kb on - strand, within DDA3937_RS01210 at 274.332 kb on + strand, within DDA3937_RS01210 at 274.333 kb on - strand, within DDA3937_RS01210 at 274.351 kb on + strand, within DDA3937_RS01210 at 274.351 kb on + strand, within DDA3937_RS01210 at 274.352 kb on - strand, within DDA3937_RS01210 at 274.385 kb on + strand, within DDA3937_RS01210 at 274.385 kb on + strand, within DDA3937_RS01210 at 274.399 kb on - strand, within DDA3937_RS01210 at 274.399 kb on - strand, within DDA3937_RS01210 at 274.451 kb on + strand at 274.452 kb on - strand, within DDA3937_RS01210 at 274.522 kb on + strand, within DDA3937_RS01210 at 274.522 kb on + strand, within DDA3937_RS01210 at 274.523 kb on - strand, within DDA3937_RS01210 at 274.582 kb on + strand, within DDA3937_RS01210 at 274.582 kb on + strand, within DDA3937_RS01210 at 274.582 kb on + strand, within DDA3937_RS01210 at 274.583 kb on - strand, within DDA3937_RS01210 at 274.583 kb on - strand, within DDA3937_RS01210 at 274.583 kb on - strand, within DDA3937_RS01210 at 274.583 kb on - strand, within DDA3937_RS01210 at 274.700 kb on + strand, within DDA3937_RS01210 at 274.701 kb on - strand, within DDA3937_RS01210 at 274.701 kb on - strand, within DDA3937_RS01210 at 274.701 kb on - strand, within DDA3937_RS01210
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 272,400 + -0.3 272,578 + DDA3937_RS01195 0.27 -0.2 272,601 + DDA3937_RS01195 0.31 +0.6 272,601 + DDA3937_RS01195 0.31 -0.8 272,602 - DDA3937_RS01195 0.31 -1.4 272,611 + DDA3937_RS01195 0.32 -2.1 272,611 + DDA3937_RS01195 0.32 +0.4 272,611 + DDA3937_RS01195 0.32 +0.2 272,611 + DDA3937_RS01195 0.32 -0.5 272,611 + DDA3937_RS01195 0.32 +0.0 272,611 + DDA3937_RS01195 0.32 -0.1 272,611 + DDA3937_RS01195 0.32 -0.8 272,611 + DDA3937_RS01195 0.32 +0.1 272,611 + DDA3937_RS01195 0.32 +0.3 272,611 + DDA3937_RS01195 0.32 -0.4 272,611 + -1.0 272,612 - DDA3937_RS01195 0.32 -0.8 272,612 - DDA3937_RS01195 0.32 +0.1 272,612 - DDA3937_RS01195 0.32 +0.3 272,612 - DDA3937_RS01195 0.32 -1.1 272,612 - DDA3937_RS01195 0.32 -0.0 272,612 - DDA3937_RS01195 0.32 -1.2 272,612 - DDA3937_RS01195 0.32 -2.2 272,612 - DDA3937_RS01195 0.32 -1.4 272,613 + DDA3937_RS01195 0.32 -0.3 272,613 + DDA3937_RS01195 0.32 -0.3 272,715 - DDA3937_RS01195 0.47 -1.2 272,715 - DDA3937_RS01195 0.47 +0.4 272,756 + DDA3937_RS01195 0.53 -0.8 272,756 + DDA3937_RS01195 0.53 -0.2 273,067 + -0.2 273,068 - +0.1 273,068 - +1.8 273,072 + +0.6 273,073 - +0.0 273,104 + -0.3 273,104 + +0.9 273,105 - +0.0 273,105 - +0.0 273,105 - -0.4 273,106 + +0.5 273,107 - -0.2 273,144 + +0.6 273,144 + +1.4 273,145 - +0.4 273,145 - +0.2 273,145 - -0.3 273,145 - -0.5 273,147 + -0.5 273,147 + +0.3 273,148 - -0.5 273,155 + +0.0 273,165 + -0.3 273,166 - +0.2 273,170 - -0.1 273,217 + +0.2 273,217 + -0.3 273,218 - -0.0 273,218 - +1.0 273,218 - +0.1 273,223 + DDA3937_RS01200 0.10 -0.3 273,244 + DDA3937_RS01200 0.14 +0.6 273,244 + DDA3937_RS01200 0.14 +0.0 273,244 + DDA3937_RS01200 0.14 -0.8 273,244 + DDA3937_RS01200 0.14 +0.6 273,244 + DDA3937_RS01200 0.14 +0.0 273,244 + DDA3937_RS01200 0.14 +0.2 273,244 + DDA3937_RS01200 0.14 -0.6 273,244 + DDA3937_RS01200 0.14 +0.0 273,244 + DDA3937_RS01200 0.14 +0.0 273,244 + DDA3937_RS01200 0.14 +0.4 273,244 + DDA3937_RS01200 0.14 -0.5 273,244 + DDA3937_RS01200 0.14 +0.6 273,244 + DDA3937_RS01200 0.14 +0.2 273,244 + DDA3937_RS01200 0.14 +1.0 273,244 + DDA3937_RS01200 0.14 -0.2 273,244 + DDA3937_RS01200 0.14 +0.0 273,244 + DDA3937_RS01200 0.14 +0.4 273,244 + DDA3937_RS01200 0.14 -0.6 273,244 + DDA3937_RS01200 0.14 +0.1 273,244 + DDA3937_RS01200 0.14 +0.4 273,244 + DDA3937_RS01200 0.14 +0.2 273,244 + DDA3937_RS01200 0.14 +0.0 273,245 - DDA3937_RS01200 0.14 +1.3 273,245 - DDA3937_RS01200 0.14 +0.2 273,245 - -1.0 273,245 - DDA3937_RS01200 0.14 +0.0 273,245 - DDA3937_RS01200 0.14 +0.4 273,245 - DDA3937_RS01200 0.14 +0.4 273,245 - DDA3937_RS01200 0.14 -0.5 273,245 - DDA3937_RS01200 0.14 +0.4 273,245 - DDA3937_RS01200 0.14 +0.2 273,245 - DDA3937_RS01200 0.14 -0.4 273,245 - DDA3937_RS01200 0.14 +0.5 273,245 - DDA3937_RS01200 0.14 +1.5 273,245 - DDA3937_RS01200 0.14 -0.1 273,245 - DDA3937_RS01200 0.14 +1.4 273,257 + DDA3937_RS01200 0.16 +0.4 273,257 + DDA3937_RS01200 0.16 -1.6 273,257 + DDA3937_RS01200 0.16 +0.7 273,257 + DDA3937_RS01200 0.16 -0.6 273,257 + DDA3937_RS01200 0.16 +0.3 273,258 - DDA3937_RS01200 0.16 +0.2 273,258 - DDA3937_RS01200 0.16 -0.1 273,258 - DDA3937_RS01200 0.16 +0.1 273,414 - DDA3937_RS01200 0.43 +1.3 273,422 + DDA3937_RS01200 0.44 +0.2 273,422 + DDA3937_RS01200 0.44 +1.0 273,422 + DDA3937_RS01200 0.44 +0.0 273,422 + DDA3937_RS01200 0.44 +1.5 273,422 + DDA3937_RS01200 0.44 +0.0 273,422 + DDA3937_RS01200 0.44 +0.6 273,422 + DDA3937_RS01200 0.44 -0.3 273,423 - DDA3937_RS01200 0.44 +0.2 273,423 - DDA3937_RS01200 0.44 +0.0 273,423 - DDA3937_RS01200 0.44 -0.2 273,423 - DDA3937_RS01200 0.44 +0.0 273,423 - DDA3937_RS01200 0.44 +0.1 273,423 - DDA3937_RS01200 0.44 -1.0 273,423 - DDA3937_RS01200 0.44 +0.5 273,429 + DDA3937_RS01200 0.45 +0.9 273,429 + DDA3937_RS01200 0.45 -0.2 273,429 + DDA3937_RS01200 0.45 -0.5 273,429 + DDA3937_RS01200 0.45 -1.3 273,429 + DDA3937_RS01200 0.45 +0.7 273,429 + DDA3937_RS01200 0.45 +2.4 273,430 - DDA3937_RS01200 0.46 +1.0 273,430 - DDA3937_RS01200 0.46 +0.5 273,430 - DDA3937_RS01200 0.46 +0.5 273,430 - DDA3937_RS01200 0.46 +1.0 273,430 - DDA3937_RS01200 0.46 +0.9 273,430 - DDA3937_RS01200 0.46 +0.2 273,430 - DDA3937_RS01200 0.46 +0.7 273,431 + DDA3937_RS01200 0.46 -0.7 273,432 - DDA3937_RS01200 0.46 -1.3 273,684 + DDA3937_RS01200 0.88 -0.6 273,684 + DDA3937_RS01200 0.88 +0.3 273,685 - DDA3937_RS01200 0.89 +0.3 273,685 - DDA3937_RS01200 0.89 +2.2 273,685 - DDA3937_RS01200 0.89 -0.9 273,722 - -0.3 273,725 - -0.3 273,743 + -0.4 273,744 - +0.0 273,744 - +0.2 273,769 + -0.7 273,770 - -0.4 273,792 + +1.0 273,793 - +0.0 273,821 + +0.0 273,861 + -1.1 273,879 + -0.6 273,879 + +0.3 273,881 + -1.8 274,209 + +1.0 274,210 - -0.4 274,323 + DDA3937_RS01210 0.15 +0.0 274,324 - DDA3937_RS01210 0.15 -1.3 274,324 - DDA3937_RS01210 0.15 +1.2 274,324 - DDA3937_RS01210 0.15 +0.7 274,324 - DDA3937_RS01210 0.15 +0.4 274,332 + DDA3937_RS01210 0.16 -0.5 274,333 - DDA3937_RS01210 0.16 +1.0 274,351 + DDA3937_RS01210 0.19 -0.3 274,351 + DDA3937_RS01210 0.19 -0.1 274,352 - DDA3937_RS01210 0.19 +0.4 274,385 + DDA3937_RS01210 0.24 -0.5 274,385 + DDA3937_RS01210 0.24 +1.0 274,399 - DDA3937_RS01210 0.26 +0.3 274,399 - DDA3937_RS01210 0.26 +1.0 274,451 + +0.0 274,452 - DDA3937_RS01210 0.33 +1.6 274,522 + DDA3937_RS01210 0.43 +2.6 274,522 + DDA3937_RS01210 0.43 -0.1 274,523 - DDA3937_RS01210 0.43 +0.3 274,582 + DDA3937_RS01210 0.51 +0.3 274,582 + DDA3937_RS01210 0.51 +0.0 274,582 + DDA3937_RS01210 0.51 +0.2 274,583 - DDA3937_RS01210 0.52 -0.4 274,583 - DDA3937_RS01210 0.52 -0.3 274,583 - DDA3937_RS01210 0.52 +0.0 274,583 - DDA3937_RS01210 0.52 -0.4 274,700 + DDA3937_RS01210 0.68 -0.2 274,701 - DDA3937_RS01210 0.68 -2.2 274,701 - DDA3937_RS01210 0.68 +0.0 274,701 - DDA3937_RS01210 0.68 +0.4
Or see this region's nucleotide sequence