Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01120 and DDA3937_RS01125 are separated by 100 nucleotides DDA3937_RS01125 and DDA3937_RS01130 overlap by 8 nucleotides DDA3937_RS01130 and DDA3937_RS01135 are separated by 26 nucleotides DDA3937_RS01135 and DDA3937_RS01140 are separated by 165 nucleotides
DDA3937_RS01120: DDA3937_RS01120 - PLP-dependent aminotransferase family protein, at 258,160 to 259,596
_RS01120
DDA3937_RS01125: DDA3937_RS01125 - molybdopterin-dependent oxidoreductase, at 259,697 to 260,464
_RS01125
DDA3937_RS01130: DDA3937_RS01130 - cytochrome b/b6 domain-containing protein, at 260,457 to 261,059
_RS01130
DDA3937_RS01135: DDA3937_RS01135 - hypothetical protein, at 261,086 to 261,709
_RS01135
DDA3937_RS01140: DDA3937_RS01140 - heavy metal response regulator transcription factor, at 261,875 to 262,546
_RS01140
Position (kb) 260
261
262 Strain fitness (log2 ratio) -2
-1
0
1
2 at 259.471 kb on + strand at 259.471 kb on + strand at 259.488 kb on + strand at 259.488 kb on + strand at 259.489 kb on - strand at 259.489 kb on - strand at 259.489 kb on - strand at 259.521 kb on - strand at 259.521 kb on - strand at 259.575 kb on + strand at 259.576 kb on - strand at 259.576 kb on - strand at 259.576 kb on - strand at 259.576 kb on - strand at 259.594 kb on + strand at 259.625 kb on + strand at 259.703 kb on - strand at 259.703 kb on - strand at 259.717 kb on + strand at 259.719 kb on + strand at 259.719 kb on + strand at 259.720 kb on - strand at 259.907 kb on - strand, within DDA3937_RS01125 at 259.920 kb on + strand, within DDA3937_RS01125 at 259.921 kb on - strand, within DDA3937_RS01125 at 259.921 kb on - strand, within DDA3937_RS01125 at 259.939 kb on + strand, within DDA3937_RS01125 at 259.940 kb on - strand, within DDA3937_RS01125 at 259.950 kb on + strand, within DDA3937_RS01125 at 259.950 kb on + strand, within DDA3937_RS01125 at 259.950 kb on + strand, within DDA3937_RS01125 at 259.975 kb on + strand, within DDA3937_RS01125 at 260.139 kb on + strand, within DDA3937_RS01125 at 260.140 kb on - strand, within DDA3937_RS01125 at 260.151 kb on + strand, within DDA3937_RS01125 at 260.151 kb on + strand, within DDA3937_RS01125 at 260.151 kb on + strand, within DDA3937_RS01125 at 260.151 kb on + strand, within DDA3937_RS01125 at 260.151 kb on + strand, within DDA3937_RS01125 at 260.151 kb on + strand, within DDA3937_RS01125 at 260.151 kb on + strand, within DDA3937_RS01125 at 260.151 kb on + strand, within DDA3937_RS01125 at 260.151 kb on + strand, within DDA3937_RS01125 at 260.151 kb on + strand, within DDA3937_RS01125 at 260.152 kb on - strand, within DDA3937_RS01125 at 260.152 kb on - strand, within DDA3937_RS01125 at 260.152 kb on - strand, within DDA3937_RS01125 at 260.152 kb on - strand, within DDA3937_RS01125 at 260.163 kb on - strand, within DDA3937_RS01125 at 260.169 kb on + strand, within DDA3937_RS01125 at 260.169 kb on + strand, within DDA3937_RS01125 at 260.179 kb on - strand, within DDA3937_RS01125 at 260.181 kb on + strand, within DDA3937_RS01125 at 260.181 kb on + strand, within DDA3937_RS01125 at 260.181 kb on + strand, within DDA3937_RS01125 at 260.181 kb on + strand, within DDA3937_RS01125 at 260.182 kb on - strand, within DDA3937_RS01125 at 260.182 kb on - strand, within DDA3937_RS01125 at 260.188 kb on + strand, within DDA3937_RS01125 at 260.189 kb on - strand, within DDA3937_RS01125 at 260.189 kb on - strand, within DDA3937_RS01125 at 260.252 kb on + strand, within DDA3937_RS01125 at 260.294 kb on + strand, within DDA3937_RS01125 at 260.295 kb on - strand, within DDA3937_RS01125 at 260.326 kb on + strand, within DDA3937_RS01125 at 260.326 kb on + strand at 260.327 kb on - strand, within DDA3937_RS01125 at 260.430 kb on - strand at 260.573 kb on - strand, within DDA3937_RS01130 at 260.573 kb on - strand, within DDA3937_RS01130 at 260.598 kb on + strand, within DDA3937_RS01130 at 260.599 kb on - strand, within DDA3937_RS01130 at 260.599 kb on - strand, within DDA3937_RS01130 at 260.599 kb on - strand, within DDA3937_RS01130 at 260.599 kb on - strand, within DDA3937_RS01130 at 260.661 kb on + strand, within DDA3937_RS01130 at 260.661 kb on + strand, within DDA3937_RS01130 at 260.661 kb on + strand, within DDA3937_RS01130 at 260.662 kb on - strand, within DDA3937_RS01130 at 260.662 kb on - strand, within DDA3937_RS01130 at 260.662 kb on - strand, within DDA3937_RS01130 at 260.686 kb on + strand, within DDA3937_RS01130 at 260.686 kb on + strand, within DDA3937_RS01130 at 260.687 kb on - strand, within DDA3937_RS01130 at 260.687 kb on - strand, within DDA3937_RS01130 at 260.708 kb on + strand, within DDA3937_RS01130 at 260.708 kb on + strand, within DDA3937_RS01130 at 260.708 kb on + strand, within DDA3937_RS01130 at 260.708 kb on + strand, within DDA3937_RS01130 at 260.709 kb on - strand, within DDA3937_RS01130 at 260.709 kb on - strand, within DDA3937_RS01130 at 260.710 kb on + strand, within DDA3937_RS01130 at 260.710 kb on + strand, within DDA3937_RS01130 at 260.710 kb on + strand, within DDA3937_RS01130 at 260.711 kb on - strand, within DDA3937_RS01130 at 260.716 kb on + strand, within DDA3937_RS01130 at 260.717 kb on - strand, within DDA3937_RS01130 at 260.766 kb on + strand, within DDA3937_RS01130 at 260.767 kb on - strand, within DDA3937_RS01130 at 260.767 kb on - strand, within DDA3937_RS01130 at 260.826 kb on + strand, within DDA3937_RS01130 at 260.833 kb on + strand, within DDA3937_RS01130 at 260.833 kb on + strand, within DDA3937_RS01130 at 260.833 kb on + strand, within DDA3937_RS01130 at 260.833 kb on + strand, within DDA3937_RS01130 at 260.833 kb on + strand, within DDA3937_RS01130 at 260.833 kb on + strand, within DDA3937_RS01130 at 260.833 kb on + strand, within DDA3937_RS01130 at 260.833 kb on + strand, within DDA3937_RS01130 at 260.834 kb on - strand, within DDA3937_RS01130 at 260.834 kb on - strand, within DDA3937_RS01130 at 260.834 kb on - strand, within DDA3937_RS01130 at 260.834 kb on - strand, within DDA3937_RS01130 at 260.883 kb on + strand, within DDA3937_RS01130 at 260.916 kb on - strand, within DDA3937_RS01130 at 260.916 kb on - strand, within DDA3937_RS01130 at 260.916 kb on - strand, within DDA3937_RS01130 at 260.916 kb on - strand, within DDA3937_RS01130 at 260.954 kb on + strand, within DDA3937_RS01130 at 260.957 kb on - strand, within DDA3937_RS01130 at 260.957 kb on - strand, within DDA3937_RS01130 at 260.957 kb on - strand, within DDA3937_RS01130 at 260.957 kb on - strand, within DDA3937_RS01130 at 260.975 kb on + strand, within DDA3937_RS01130 at 260.976 kb on - strand, within DDA3937_RS01130 at 260.976 kb on - strand, within DDA3937_RS01130 at 260.976 kb on - strand, within DDA3937_RS01130 at 260.998 kb on - strand, within DDA3937_RS01130 at 260.998 kb on - strand, within DDA3937_RS01130 at 260.998 kb on - strand, within DDA3937_RS01130 at 261.087 kb on + strand at 261.217 kb on + strand, within DDA3937_RS01135 at 261.217 kb on + strand, within DDA3937_RS01135 at 261.270 kb on + strand, within DDA3937_RS01135 at 261.270 kb on + strand, within DDA3937_RS01135 at 261.270 kb on + strand, within DDA3937_RS01135 at 261.270 kb on + strand, within DDA3937_RS01135 at 261.271 kb on - strand, within DDA3937_RS01135 at 261.271 kb on - strand, within DDA3937_RS01135 at 261.271 kb on - strand, within DDA3937_RS01135 at 261.271 kb on - strand, within DDA3937_RS01135 at 261.271 kb on - strand, within DDA3937_RS01135 at 261.314 kb on + strand, within DDA3937_RS01135 at 261.457 kb on + strand, within DDA3937_RS01135 at 261.573 kb on - strand, within DDA3937_RS01135 at 261.573 kb on - strand, within DDA3937_RS01135 at 261.587 kb on + strand, within DDA3937_RS01135 at 261.588 kb on - strand, within DDA3937_RS01135 at 261.588 kb on - strand, within DDA3937_RS01135 at 261.663 kb on - strand at 261.691 kb on + strand at 261.704 kb on + strand at 261.704 kb on + strand at 261.704 kb on + strand at 261.704 kb on + strand at 261.704 kb on + strand at 261.705 kb on - strand at 261.705 kb on - strand at 261.705 kb on - strand at 261.705 kb on - strand at 261.705 kb on - strand at 261.705 kb on - strand at 261.755 kb on + strand at 261.755 kb on + strand at 261.756 kb on - strand at 261.756 kb on - strand at 261.756 kb on - strand at 261.788 kb on + strand at 261.788 kb on + strand at 261.788 kb on + strand at 261.788 kb on + strand at 261.789 kb on - strand at 261.789 kb on - strand at 261.789 kb on - strand at 261.812 kb on + strand at 261.812 kb on + strand at 261.812 kb on + strand at 261.812 kb on + strand at 261.812 kb on + strand at 261.812 kb on + strand at 261.812 kb on + strand at 261.813 kb on - strand at 261.813 kb on - strand at 261.813 kb on - strand at 261.813 kb on - strand at 261.813 kb on - strand at 261.813 kb on - strand at 261.813 kb on - strand at 261.813 kb on - strand at 261.813 kb on - strand at 261.813 kb on - strand at 261.813 kb on - strand at 261.819 kb on + strand at 261.819 kb on + strand at 261.819 kb on + strand at 261.819 kb on + strand at 261.819 kb on + strand at 261.820 kb on - strand at 261.880 kb on + strand at 261.880 kb on + strand at 261.881 kb on - strand at 261.881 kb on - strand at 261.917 kb on + strand at 261.918 kb on - strand at 262.016 kb on - strand, within DDA3937_RS01140 at 262.016 kb on - strand, within DDA3937_RS01140
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 259,471 + -1.5 259,471 + +0.2 259,488 + -0.3 259,488 + -0.3 259,489 - -0.1 259,489 - +1.0 259,489 - +0.0 259,521 - -1.5 259,521 - -0.5 259,575 + -0.4 259,576 - +0.0 259,576 - -0.5 259,576 - -1.1 259,576 - -0.1 259,594 + +0.2 259,625 + -0.2 259,703 - +0.2 259,703 - -0.3 259,717 + +1.0 259,719 + +0.3 259,719 + +0.1 259,720 - +0.5 259,907 - DDA3937_RS01125 0.27 -0.2 259,920 + DDA3937_RS01125 0.29 -1.2 259,921 - DDA3937_RS01125 0.29 -0.7 259,921 - DDA3937_RS01125 0.29 -0.4 259,939 + DDA3937_RS01125 0.32 -0.8 259,940 - DDA3937_RS01125 0.32 -0.0 259,950 + DDA3937_RS01125 0.33 +0.0 259,950 + DDA3937_RS01125 0.33 -0.1 259,950 + DDA3937_RS01125 0.33 +0.1 259,975 + DDA3937_RS01125 0.36 +1.0 260,139 + DDA3937_RS01125 0.58 -0.1 260,140 - DDA3937_RS01125 0.58 -1.3 260,151 + DDA3937_RS01125 0.59 -1.1 260,151 + DDA3937_RS01125 0.59 +0.6 260,151 + DDA3937_RS01125 0.59 -0.5 260,151 + DDA3937_RS01125 0.59 -0.5 260,151 + DDA3937_RS01125 0.59 +0.2 260,151 + DDA3937_RS01125 0.59 -0.1 260,151 + DDA3937_RS01125 0.59 -1.3 260,151 + DDA3937_RS01125 0.59 -0.1 260,151 + DDA3937_RS01125 0.59 -1.1 260,151 + DDA3937_RS01125 0.59 -0.0 260,152 - DDA3937_RS01125 0.59 +0.2 260,152 - DDA3937_RS01125 0.59 -0.6 260,152 - DDA3937_RS01125 0.59 -0.5 260,152 - DDA3937_RS01125 0.59 -0.4 260,163 - DDA3937_RS01125 0.61 +1.4 260,169 + DDA3937_RS01125 0.61 -0.2 260,169 + DDA3937_RS01125 0.61 +1.6 260,179 - DDA3937_RS01125 0.63 -0.0 260,181 + DDA3937_RS01125 0.63 +1.6 260,181 + DDA3937_RS01125 0.63 -1.0 260,181 + DDA3937_RS01125 0.63 +0.0 260,181 + DDA3937_RS01125 0.63 +2.0 260,182 - DDA3937_RS01125 0.63 +0.3 260,182 - DDA3937_RS01125 0.63 -1.7 260,188 + DDA3937_RS01125 0.64 -0.3 260,189 - DDA3937_RS01125 0.64 -0.3 260,189 - DDA3937_RS01125 0.64 -0.3 260,252 + DDA3937_RS01125 0.72 +1.4 260,294 + DDA3937_RS01125 0.78 +1.6 260,295 - DDA3937_RS01125 0.78 +1.0 260,326 + DDA3937_RS01125 0.82 -0.7 260,326 + +0.5 260,327 - DDA3937_RS01125 0.82 -0.7 260,430 - +0.9 260,573 - DDA3937_RS01130 0.19 -0.8 260,573 - DDA3937_RS01130 0.19 -1.5 260,598 + DDA3937_RS01130 0.23 -1.8 260,599 - DDA3937_RS01130 0.24 -0.6 260,599 - DDA3937_RS01130 0.24 -1.3 260,599 - DDA3937_RS01130 0.24 +0.3 260,599 - DDA3937_RS01130 0.24 +0.6 260,661 + DDA3937_RS01130 0.34 -1.0 260,661 + DDA3937_RS01130 0.34 +0.0 260,661 + DDA3937_RS01130 0.34 -0.0 260,662 - DDA3937_RS01130 0.34 +0.6 260,662 - DDA3937_RS01130 0.34 +1.0 260,662 - DDA3937_RS01130 0.34 +0.7 260,686 + DDA3937_RS01130 0.38 +0.0 260,686 + DDA3937_RS01130 0.38 -0.1 260,687 - DDA3937_RS01130 0.38 -0.5 260,687 - DDA3937_RS01130 0.38 -0.4 260,708 + DDA3937_RS01130 0.42 -1.0 260,708 + DDA3937_RS01130 0.42 -1.0 260,708 + DDA3937_RS01130 0.42 -1.0 260,708 + DDA3937_RS01130 0.42 -1.0 260,709 - DDA3937_RS01130 0.42 -1.5 260,709 - DDA3937_RS01130 0.42 -1.0 260,710 + DDA3937_RS01130 0.42 -1.3 260,710 + DDA3937_RS01130 0.42 -1.1 260,710 + DDA3937_RS01130 0.42 -0.7 260,711 - DDA3937_RS01130 0.42 -0.5 260,716 + DDA3937_RS01130 0.43 +2.0 260,717 - DDA3937_RS01130 0.43 +0.8 260,766 + DDA3937_RS01130 0.51 -1.4 260,767 - DDA3937_RS01130 0.51 +0.2 260,767 - DDA3937_RS01130 0.51 -0.5 260,826 + DDA3937_RS01130 0.61 +0.4 260,833 + DDA3937_RS01130 0.62 -0.8 260,833 + DDA3937_RS01130 0.62 -0.2 260,833 + DDA3937_RS01130 0.62 -1.3 260,833 + DDA3937_RS01130 0.62 -0.2 260,833 + DDA3937_RS01130 0.62 +0.6 260,833 + DDA3937_RS01130 0.62 -0.6 260,833 + DDA3937_RS01130 0.62 +0.2 260,833 + DDA3937_RS01130 0.62 -2.1 260,834 - DDA3937_RS01130 0.63 +0.3 260,834 - DDA3937_RS01130 0.63 -0.8 260,834 - DDA3937_RS01130 0.63 -1.8 260,834 - DDA3937_RS01130 0.63 +1.3 260,883 + DDA3937_RS01130 0.71 -0.0 260,916 - DDA3937_RS01130 0.76 -0.2 260,916 - DDA3937_RS01130 0.76 +0.2 260,916 - DDA3937_RS01130 0.76 +0.2 260,916 - DDA3937_RS01130 0.76 -1.8 260,954 + DDA3937_RS01130 0.82 -0.5 260,957 - DDA3937_RS01130 0.83 +0.2 260,957 - DDA3937_RS01130 0.83 +0.1 260,957 - DDA3937_RS01130 0.83 -0.8 260,957 - DDA3937_RS01130 0.83 +2.0 260,975 + DDA3937_RS01130 0.86 +0.2 260,976 - DDA3937_RS01130 0.86 -0.2 260,976 - DDA3937_RS01130 0.86 -1.1 260,976 - DDA3937_RS01130 0.86 -0.9 260,998 - DDA3937_RS01130 0.90 -0.9 260,998 - DDA3937_RS01130 0.90 +0.0 260,998 - DDA3937_RS01130 0.90 +1.3 261,087 + +1.0 261,217 + DDA3937_RS01135 0.21 +1.0 261,217 + DDA3937_RS01135 0.21 +0.9 261,270 + DDA3937_RS01135 0.29 -0.6 261,270 + DDA3937_RS01135 0.29 -0.5 261,270 + DDA3937_RS01135 0.29 +0.3 261,270 + DDA3937_RS01135 0.29 -0.6 261,271 - DDA3937_RS01135 0.30 +0.9 261,271 - DDA3937_RS01135 0.30 -0.3 261,271 - DDA3937_RS01135 0.30 -2.1 261,271 - DDA3937_RS01135 0.30 +0.3 261,271 - DDA3937_RS01135 0.30 +0.3 261,314 + DDA3937_RS01135 0.37 -1.7 261,457 + DDA3937_RS01135 0.59 -0.5 261,573 - DDA3937_RS01135 0.78 -0.5 261,573 - DDA3937_RS01135 0.78 -1.3 261,587 + DDA3937_RS01135 0.80 -0.5 261,588 - DDA3937_RS01135 0.80 -0.6 261,588 - DDA3937_RS01135 0.80 -1.3 261,663 - -0.2 261,691 + +0.0 261,704 + -0.3 261,704 + -0.5 261,704 + +0.9 261,704 + +0.0 261,704 + +0.2 261,705 - -0.7 261,705 - +0.9 261,705 - +0.2 261,705 - -0.4 261,705 - -1.0 261,705 - +0.2 261,755 + +0.0 261,755 + +1.0 261,756 - -0.8 261,756 - -1.0 261,756 - +0.4 261,788 + +0.9 261,788 + -0.4 261,788 + -0.3 261,788 + +0.3 261,789 - +0.0 261,789 - -0.1 261,789 - +0.8 261,812 + -0.2 261,812 + -0.1 261,812 + -1.0 261,812 + +0.5 261,812 + -0.6 261,812 + -0.5 261,812 + -0.2 261,813 - +0.3 261,813 - -1.3 261,813 - +0.8 261,813 - +0.3 261,813 - -0.1 261,813 - +1.4 261,813 - -0.7 261,813 - -0.1 261,813 - -0.5 261,813 - -0.2 261,813 - +1.2 261,819 + +1.6 261,819 + +0.5 261,819 + -0.4 261,819 + -0.1 261,819 + +0.0 261,820 - -0.5 261,880 + +0.1 261,880 + +0.6 261,881 - -0.2 261,881 - -1.0 261,917 + -1.3 261,918 - -0.3 262,016 - DDA3937_RS01140 0.21 -0.0 262,016 - DDA3937_RS01140 0.21 -1.5
Or see this region's nucleotide sequence