Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS00900

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS00895 and DDA3937_RS00900 are separated by 586 nucleotidesDDA3937_RS00900 and DDA3937_RS00905 are separated by 65 nucleotidesDDA3937_RS00905 and DDA3937_RS00910 are separated by 158 nucleotides DDA3937_RS00895: DDA3937_RS00895 - aquaporin, at 206,480 to 207,331 _RS00895 DDA3937_RS00900: DDA3937_RS00900 - cell division protein ZapB, at 207,918 to 208,160 _RS00900 DDA3937_RS00905: DDA3937_RS00905 - ribonuclease E activity regulator RraA, at 208,226 to 208,711 _RS00905 DDA3937_RS00910: DDA3937_RS00910 - 1,4-dihydroxy-2-naphthoate polyprenyltransferase, at 208,870 to 209,787 _RS00910 Position (kb) 207 208 209Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 207.003 kb on + strand, within DDA3937_RS00895at 207.004 kb on - strand, within DDA3937_RS00895at 207.013 kb on - strand, within DDA3937_RS00895at 207.013 kb on - strand, within DDA3937_RS00895at 207.060 kb on + strand, within DDA3937_RS00895at 207.060 kb on + strand, within DDA3937_RS00895at 207.060 kb on + strand, within DDA3937_RS00895at 207.060 kb on + strand, within DDA3937_RS00895at 207.060 kb on + strand, within DDA3937_RS00895at 207.060 kb on + strand, within DDA3937_RS00895at 207.060 kb on + strand, within DDA3937_RS00895at 207.060 kb on + strand, within DDA3937_RS00895at 207.060 kb on + strand, within DDA3937_RS00895at 207.060 kb on + strand, within DDA3937_RS00895at 207.060 kb on + strand, within DDA3937_RS00895at 207.060 kb on + strand, within DDA3937_RS00895at 207.060 kb on + strand, within DDA3937_RS00895at 207.061 kb on - strand, within DDA3937_RS00895at 207.061 kb on - strand, within DDA3937_RS00895at 207.061 kb on - strand, within DDA3937_RS00895at 207.061 kb on - strand, within DDA3937_RS00895at 207.061 kb on - strand, within DDA3937_RS00895at 207.065 kb on + strand, within DDA3937_RS00895at 207.156 kb on + strand, within DDA3937_RS00895at 207.156 kb on + strand, within DDA3937_RS00895at 207.157 kb on - strand, within DDA3937_RS00895at 207.157 kb on - strand, within DDA3937_RS00895at 207.187 kb on + strand, within DDA3937_RS00895at 207.187 kb on + strand, within DDA3937_RS00895at 207.187 kb on + strand, within DDA3937_RS00895at 207.187 kb on + strand, within DDA3937_RS00895at 207.188 kb on - strand, within DDA3937_RS00895at 207.188 kb on - strand, within DDA3937_RS00895at 207.188 kb on - strand, within DDA3937_RS00895at 207.188 kb on - strand, within DDA3937_RS00895at 207.188 kb on - strand, within DDA3937_RS00895at 207.304 kb on + strandat 207.332 kb on - strandat 207.348 kb on + strandat 207.348 kb on + strandat 207.348 kb on + strandat 207.349 kb on - strandat 207.349 kb on - strandat 207.349 kb on - strandat 207.350 kb on + strandat 207.350 kb on + strandat 207.350 kb on + strandat 207.350 kb on + strandat 207.351 kb on - strandat 207.351 kb on - strandat 207.351 kb on - strandat 207.351 kb on - strandat 207.351 kb on - strandat 207.355 kb on + strandat 207.355 kb on + strandat 207.356 kb on - strandat 207.356 kb on - strandat 207.356 kb on - strandat 207.356 kb on - strandat 207.388 kb on + strandat 207.389 kb on - strandat 207.474 kb on + strandat 207.495 kb on - strandat 207.544 kb on + strandat 207.598 kb on + strandat 207.598 kb on + strandat 207.599 kb on - strandat 207.599 kb on - strandat 207.599 kb on - strandat 207.613 kb on + strandat 207.613 kb on + strandat 207.614 kb on - strandat 207.614 kb on - strandat 207.614 kb on - strandat 207.616 kb on + strandat 207.616 kb on + strandat 207.616 kb on + strandat 207.617 kb on - strandat 207.623 kb on + strandat 207.623 kb on + strandat 207.626 kb on + strandat 207.695 kb on + strandat 207.732 kb on + strandat 207.732 kb on + strandat 207.732 kb on + strandat 207.732 kb on + strandat 207.732 kb on + strandat 207.732 kb on + strandat 207.732 kb on + strandat 207.750 kb on + strandat 207.751 kb on - strandat 207.803 kb on + strandat 207.803 kb on + strandat 207.867 kb on + strandat 207.867 kb on + strandat 207.911 kb on - strandat 207.917 kb on + strandat 207.918 kb on - strandat 207.918 kb on - strandat 208.022 kb on + strand, within DDA3937_RS00900at 208.022 kb on + strand, within DDA3937_RS00900at 208.022 kb on + strand, within DDA3937_RS00900at 208.022 kb on + strand, within DDA3937_RS00900at 208.022 kb on + strand, within DDA3937_RS00900at 208.022 kb on + strand, within DDA3937_RS00900at 208.022 kb on + strand, within DDA3937_RS00900at 208.023 kb on - strand, within DDA3937_RS00900at 208.023 kb on - strand, within DDA3937_RS00900at 208.023 kb on - strandat 208.023 kb on - strand, within DDA3937_RS00900at 208.023 kb on - strand, within DDA3937_RS00900at 208.023 kb on - strand, within DDA3937_RS00900at 208.023 kb on - strand, within DDA3937_RS00900at 208.046 kb on + strand, within DDA3937_RS00900at 208.046 kb on + strand, within DDA3937_RS00900at 208.091 kb on - strand, within DDA3937_RS00900at 208.091 kb on - strandat 208.091 kb on - strand, within DDA3937_RS00900at 208.140 kb on - strandat 208.140 kb on - strandat 208.215 kb on + strandat 208.216 kb on - strandat 208.216 kb on - strandat 208.216 kb on - strandat 208.219 kb on + strandat 208.228 kb on - strandat 208.278 kb on + strand, within DDA3937_RS00905at 208.278 kb on + strand, within DDA3937_RS00905at 208.278 kb on + strand, within DDA3937_RS00905at 208.279 kb on - strand, within DDA3937_RS00905at 208.279 kb on - strand, within DDA3937_RS00905at 208.434 kb on + strand, within DDA3937_RS00905at 208.434 kb on + strand, within DDA3937_RS00905at 208.435 kb on - strand, within DDA3937_RS00905at 208.435 kb on - strandat 208.580 kb on - strand, within DDA3937_RS00905at 208.580 kb on - strand, within DDA3937_RS00905at 208.624 kb on + strand, within DDA3937_RS00905at 208.624 kb on + strand, within DDA3937_RS00905at 208.625 kb on - strand, within DDA3937_RS00905at 208.625 kb on - strand, within DDA3937_RS00905at 208.625 kb on - strand, within DDA3937_RS00905at 208.625 kb on - strand, within DDA3937_RS00905at 208.677 kb on + strandat 208.677 kb on + strandat 208.677 kb on + strandat 208.677 kb on + strandat 208.677 kb on + strandat 208.677 kb on + strandat 208.677 kb on + strandat 208.678 kb on - strandat 208.678 kb on - strandat 208.678 kb on - strandat 208.678 kb on - strandat 208.681 kb on + strandat 208.681 kb on + strandat 208.681 kb on + strandat 208.681 kb on + strandat 208.682 kb on - strandat 208.682 kb on - strandat 208.682 kb on - strandat 208.700 kb on - strandat 208.704 kb on + strandat 208.704 kb on + strandat 208.704 kb on + strandat 208.704 kb on + strandat 208.705 kb on - strandat 208.705 kb on - strandat 208.711 kb on + strandat 208.712 kb on - strandat 208.712 kb on - strandat 208.712 kb on - strandat 208.717 kb on + strandat 208.718 kb on - strandat 208.718 kb on - strandat 208.718 kb on - strandat 208.751 kb on + strandat 208.751 kb on + strandat 208.751 kb on + strandat 208.751 kb on + strandat 208.751 kb on + strandat 208.751 kb on + strandat 208.751 kb on + strandat 208.751 kb on + strandat 208.752 kb on - strandat 208.752 kb on - strandat 208.752 kb on - strandat 208.752 kb on - strandat 208.752 kb on - strandat 208.752 kb on - strandat 208.752 kb on - strandat 208.752 kb on - strandat 208.752 kb on - strandat 208.817 kb on + strandat 208.871 kb on + strandat 208.950 kb on + strandat 208.951 kb on - strandat 208.979 kb on + strand, within DDA3937_RS00910at 208.980 kb on - strand, within DDA3937_RS00910at 209.037 kb on + strand, within DDA3937_RS00910at 209.037 kb on + strand, within DDA3937_RS00910at 209.037 kb on + strand, within DDA3937_RS00910at 209.038 kb on - strand, within DDA3937_RS00910at 209.038 kb on - strand, within DDA3937_RS00910at 209.045 kb on + strand, within DDA3937_RS00910at 209.045 kb on + strand, within DDA3937_RS00910at 209.045 kb on + strand, within DDA3937_RS00910at 209.092 kb on + strand, within DDA3937_RS00910at 209.092 kb on + strand, within DDA3937_RS00910at 209.092 kb on + strand, within DDA3937_RS00910at 209.092 kb on + strand, within DDA3937_RS00910at 209.093 kb on - strand, within DDA3937_RS00910at 209.093 kb on - strand, within DDA3937_RS00910at 209.093 kb on - strand, within DDA3937_RS00910at 209.093 kb on - strand, within DDA3937_RS00910at 209.102 kb on + strand, within DDA3937_RS00910

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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207,003 + DDA3937_RS00895 0.61 -1.6
207,004 - DDA3937_RS00895 0.62 -0.1
207,013 - DDA3937_RS00895 0.63 +0.5
207,013 - DDA3937_RS00895 0.63 -0.4
207,060 + DDA3937_RS00895 0.68 +0.3
207,060 + DDA3937_RS00895 0.68 -0.3
207,060 + DDA3937_RS00895 0.68 +0.1
207,060 + DDA3937_RS00895 0.68 -1.3
207,060 + DDA3937_RS00895 0.68 -1.5
207,060 + DDA3937_RS00895 0.68 -0.5
207,060 + DDA3937_RS00895 0.68 -0.3
207,060 + DDA3937_RS00895 0.68 -0.2
207,060 + DDA3937_RS00895 0.68 -1.5
207,060 + DDA3937_RS00895 0.68 +0.3
207,060 + DDA3937_RS00895 0.68 -1.1
207,060 + DDA3937_RS00895 0.68 +0.4
207,060 + DDA3937_RS00895 0.68 -1.9
207,061 - DDA3937_RS00895 0.68 +0.1
207,061 - DDA3937_RS00895 0.68 -0.3
207,061 - DDA3937_RS00895 0.68 +0.8
207,061 - DDA3937_RS00895 0.68 -0.5
207,061 - DDA3937_RS00895 0.68 -0.8
207,065 + DDA3937_RS00895 0.69 +2.6
207,156 + DDA3937_RS00895 0.79 +0.1
207,156 + DDA3937_RS00895 0.79 -1.2
207,157 - DDA3937_RS00895 0.79 -1.0
207,157 - DDA3937_RS00895 0.79 +0.3
207,187 + DDA3937_RS00895 0.83 +0.3
207,187 + DDA3937_RS00895 0.83 +0.1
207,187 + DDA3937_RS00895 0.83 -0.7
207,187 + DDA3937_RS00895 0.83 -0.3
207,188 - DDA3937_RS00895 0.83 +2.6
207,188 - DDA3937_RS00895 0.83 -2.5
207,188 - DDA3937_RS00895 0.83 +0.2
207,188 - DDA3937_RS00895 0.83 -0.6
207,188 - DDA3937_RS00895 0.83 +1.9
207,304 + +1.3
207,332 - -0.2
207,348 + -2.1
207,348 + +0.1
207,348 + -0.8
207,349 - +1.1
207,349 - -1.2
207,349 - -0.3
207,350 + -0.0
207,350 + -1.2
207,350 + -0.5
207,350 + +0.2
207,351 - -1.5
207,351 - -1.9
207,351 - +0.5
207,351 - -3.2
207,351 - -0.2
207,355 + -1.1
207,355 + -0.1
207,356 - +0.3
207,356 - +1.1
207,356 - -0.0
207,356 - -1.4
207,388 + +0.3
207,389 - -0.4
207,474 + -0.4
207,495 - +0.2
207,544 + -0.3
207,598 + +0.4
207,598 + +1.1
207,599 - -0.1
207,599 - +1.5
207,599 - +0.2
207,613 + +0.7
207,613 + -0.6
207,614 - +0.5
207,614 - -1.9
207,614 - -1.6
207,616 + -0.5
207,616 + +0.1
207,616 + +0.6
207,617 - -0.2
207,623 + +0.5
207,623 + -0.5
207,626 + +0.5
207,695 + -0.3
207,732 + +1.2
207,732 + +1.6
207,732 + +0.5
207,732 + -0.5
207,732 + -0.1
207,732 + -0.4
207,732 + +0.6
207,750 + +0.3
207,751 - -2.6
207,803 + +2.3
207,803 + +0.2
207,867 + +0.3
207,867 + +0.8
207,911 - +2.1
207,917 + -1.8
207,918 - -1.9
207,918 - -3.2
208,022 + DDA3937_RS00900 0.43 +0.6
208,022 + DDA3937_RS00900 0.43 -0.9
208,022 + DDA3937_RS00900 0.43 +0.6
208,022 + DDA3937_RS00900 0.43 -0.5
208,022 + DDA3937_RS00900 0.43 -1.1
208,022 + DDA3937_RS00900 0.43 -1.4
208,022 + DDA3937_RS00900 0.43 -2.1
208,023 - DDA3937_RS00900 0.43 +0.5
208,023 - DDA3937_RS00900 0.43 -0.9
208,023 - +2.1
208,023 - DDA3937_RS00900 0.43 -0.5
208,023 - DDA3937_RS00900 0.43 -1.4
208,023 - DDA3937_RS00900 0.43 -2.3
208,023 - DDA3937_RS00900 0.43 -4.0
208,046 + DDA3937_RS00900 0.53 -2.2
208,046 + DDA3937_RS00900 0.53 -0.7
208,091 - DDA3937_RS00900 0.71 -1.9
208,091 - +0.5
208,091 - DDA3937_RS00900 0.71 -1.8
208,140 - +0.6
208,140 - -0.9
208,215 + -1.9
208,216 - -0.1
208,216 - -1.3
208,216 - -0.2
208,219 + -2.5
208,228 - -1.4
208,278 + DDA3937_RS00905 0.11 -0.4
208,278 + DDA3937_RS00905 0.11 +0.1
208,278 + DDA3937_RS00905 0.11 -0.5
208,279 - DDA3937_RS00905 0.11 -0.6
208,279 - DDA3937_RS00905 0.11 +0.7
208,434 + DDA3937_RS00905 0.43 +2.4
208,434 + DDA3937_RS00905 0.43 -0.3
208,435 - DDA3937_RS00905 0.43 +1.1
208,435 - +2.1
208,580 - DDA3937_RS00905 0.73 -0.8
208,580 - DDA3937_RS00905 0.73 -0.0
208,624 + DDA3937_RS00905 0.82 -0.5
208,624 + DDA3937_RS00905 0.82 -0.9
208,625 - DDA3937_RS00905 0.82 +0.1
208,625 - DDA3937_RS00905 0.82 -0.2
208,625 - DDA3937_RS00905 0.82 -0.5
208,625 - DDA3937_RS00905 0.82 -0.3
208,677 + -1.9
208,677 + -0.8
208,677 + -0.1
208,677 + -1.9
208,677 + -0.4
208,677 + -0.4
208,677 + +0.1
208,678 - -0.0
208,678 - -0.1
208,678 - +1.9
208,678 - -0.5
208,681 + -0.4
208,681 + -0.2
208,681 + +0.4
208,681 + -0.3
208,682 - -0.3
208,682 - -0.5
208,682 - +0.6
208,700 - +0.5
208,704 + -0.6
208,704 + -1.4
208,704 + +0.9
208,704 + -1.1
208,705 - -0.8
208,705 - +0.0
208,711 + +0.2
208,712 - +0.3
208,712 - -0.9
208,712 - +0.2
208,717 + +0.3
208,718 - -1.5
208,718 - +0.2
208,718 - -0.3
208,751 + +0.2
208,751 + -0.1
208,751 + +0.9
208,751 + +0.5
208,751 + +0.3
208,751 + +0.5
208,751 + +0.2
208,751 + +1.1
208,752 - +0.1
208,752 - -1.9
208,752 - +1.1
208,752 - -1.9
208,752 - +0.9
208,752 - +0.5
208,752 - -1.0
208,752 - +1.1
208,752 - -0.1
208,817 + -0.3
208,871 + +1.1
208,950 + -0.9
208,951 - +0.7
208,979 + DDA3937_RS00910 0.12 +0.6
208,980 - DDA3937_RS00910 0.12 +1.6
209,037 + DDA3937_RS00910 0.18 +0.1
209,037 + DDA3937_RS00910 0.18 -0.3
209,037 + DDA3937_RS00910 0.18 -0.1
209,038 - DDA3937_RS00910 0.18 -0.1
209,038 - DDA3937_RS00910 0.18 -0.4
209,045 + DDA3937_RS00910 0.19 -0.3
209,045 + DDA3937_RS00910 0.19 -0.4
209,045 + DDA3937_RS00910 0.19 -0.3
209,092 + DDA3937_RS00910 0.24 +0.2
209,092 + DDA3937_RS00910 0.24 +0.1
209,092 + DDA3937_RS00910 0.24 +0.4
209,092 + DDA3937_RS00910 0.24 -1.5
209,093 - DDA3937_RS00910 0.24 -1.5
209,093 - DDA3937_RS00910 0.24 +0.1
209,093 - DDA3937_RS00910 0.24 -0.3
209,093 - DDA3937_RS00910 0.24 -0.3
209,102 + DDA3937_RS00910 0.25 +0.2

Or see this region's nucleotide sequence