Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00735 and DDA3937_RS00740 overlap by 4 nucleotides DDA3937_RS00740 and DDA3937_RS00745 are separated by 205 nucleotides
DDA3937_RS00735: DDA3937_RS00735 - sn-glycerol-3-phosphate import ATP-binding protein UgpC, at 174,312 to 175,388
_RS00735
DDA3937_RS00740: DDA3937_RS00740 - glycerophosphodiester phosphodiesterase, at 175,385 to 176,134
_RS00740
DDA3937_RS00745: DDA3937_RS00745 - AEC family transporter, at 176,340 to 177,296
_RS00745
Position (kb) 175
176
177 Strain fitness (log2 ratio) -2
-1
0
1
2 at 174.443 kb on + strand, within DDA3937_RS00735 at 174.443 kb on + strand, within DDA3937_RS00735 at 174.443 kb on + strand, within DDA3937_RS00735 at 174.444 kb on - strand, within DDA3937_RS00735 at 174.444 kb on - strand, within DDA3937_RS00735 at 174.495 kb on + strand, within DDA3937_RS00735 at 174.495 kb on + strand at 174.495 kb on + strand, within DDA3937_RS00735 at 174.495 kb on + strand, within DDA3937_RS00735 at 174.495 kb on + strand, within DDA3937_RS00735 at 174.495 kb on + strand, within DDA3937_RS00735 at 174.495 kb on + strand, within DDA3937_RS00735 at 174.495 kb on + strand, within DDA3937_RS00735 at 174.495 kb on + strand, within DDA3937_RS00735 at 174.495 kb on + strand, within DDA3937_RS00735 at 174.495 kb on + strand, within DDA3937_RS00735 at 174.495 kb on + strand, within DDA3937_RS00735 at 174.495 kb on + strand, within DDA3937_RS00735 at 174.495 kb on + strand, within DDA3937_RS00735 at 174.495 kb on + strand, within DDA3937_RS00735 at 174.495 kb on + strand, within DDA3937_RS00735 at 174.495 kb on + strand, within DDA3937_RS00735 at 174.495 kb on + strand, within DDA3937_RS00735 at 174.495 kb on + strand, within DDA3937_RS00735 at 174.495 kb on + strand, within DDA3937_RS00735 at 174.495 kb on + strand, within DDA3937_RS00735 at 174.495 kb on + strand, within DDA3937_RS00735 at 174.496 kb on - strand, within DDA3937_RS00735 at 174.496 kb on - strand, within DDA3937_RS00735 at 174.496 kb on - strand, within DDA3937_RS00735 at 174.496 kb on - strand, within DDA3937_RS00735 at 174.496 kb on - strand, within DDA3937_RS00735 at 174.496 kb on - strand, within DDA3937_RS00735 at 174.496 kb on - strand, within DDA3937_RS00735 at 174.496 kb on - strand, within DDA3937_RS00735 at 174.496 kb on - strand, within DDA3937_RS00735 at 174.496 kb on - strand, within DDA3937_RS00735 at 174.496 kb on - strand, within DDA3937_RS00735 at 174.496 kb on - strand, within DDA3937_RS00735 at 174.496 kb on - strand, within DDA3937_RS00735 at 174.565 kb on - strand, within DDA3937_RS00735 at 174.565 kb on - strand, within DDA3937_RS00735 at 174.592 kb on - strand, within DDA3937_RS00735 at 174.606 kb on + strand, within DDA3937_RS00735 at 174.879 kb on + strand, within DDA3937_RS00735 at 174.879 kb on + strand, within DDA3937_RS00735 at 174.880 kb on - strand, within DDA3937_RS00735 at 174.978 kb on + strand, within DDA3937_RS00735 at 174.979 kb on - strand, within DDA3937_RS00735 at 175.349 kb on + strand at 175.349 kb on + strand at 175.350 kb on - strand at 175.350 kb on - strand at 175.350 kb on - strand at 175.351 kb on + strand at 175.351 kb on + strand at 175.351 kb on + strand at 175.352 kb on - strand at 175.352 kb on - strand at 175.352 kb on - strand at 175.706 kb on + strand, within DDA3937_RS00740 at 175.706 kb on + strand, within DDA3937_RS00740 at 175.723 kb on + strand, within DDA3937_RS00740 at 175.724 kb on - strand, within DDA3937_RS00740 at 175.960 kb on + strand, within DDA3937_RS00740 at 175.960 kb on + strand, within DDA3937_RS00740 at 176.027 kb on + strand, within DDA3937_RS00740 at 176.027 kb on + strand, within DDA3937_RS00740 at 176.027 kb on + strand, within DDA3937_RS00740 at 176.027 kb on + strand, within DDA3937_RS00740 at 176.028 kb on - strand, within DDA3937_RS00740 at 176.029 kb on + strand, within DDA3937_RS00740 at 176.030 kb on - strand, within DDA3937_RS00740 at 176.030 kb on - strand, within DDA3937_RS00740 at 176.122 kb on + strand at 176.123 kb on - strand at 176.138 kb on + strand at 176.138 kb on + strand at 176.138 kb on + strand at 176.144 kb on + strand at 176.144 kb on + strand at 176.148 kb on + strand at 176.235 kb on - strand at 176.329 kb on - strand at 176.510 kb on + strand, within DDA3937_RS00745 at 176.511 kb on - strand, within DDA3937_RS00745 at 176.511 kb on - strand, within DDA3937_RS00745 at 176.582 kb on + strand, within DDA3937_RS00745 at 176.798 kb on - strand, within DDA3937_RS00745 at 176.901 kb on + strand, within DDA3937_RS00745 at 176.902 kb on - strand, within DDA3937_RS00745 at 177.018 kb on - strand, within DDA3937_RS00745 at 177.018 kb on - strand, within DDA3937_RS00745 at 177.048 kb on - strand, within DDA3937_RS00745
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 174,443 + DDA3937_RS00735 0.12 +0.9 174,443 + DDA3937_RS00735 0.12 +0.3 174,443 + DDA3937_RS00735 0.12 -0.5 174,444 - DDA3937_RS00735 0.12 -0.1 174,444 - DDA3937_RS00735 0.12 +0.1 174,495 + DDA3937_RS00735 0.17 -1.6 174,495 + +0.1 174,495 + DDA3937_RS00735 0.17 +0.1 174,495 + DDA3937_RS00735 0.17 -1.5 174,495 + DDA3937_RS00735 0.17 -0.9 174,495 + DDA3937_RS00735 0.17 -1.6 174,495 + DDA3937_RS00735 0.17 -0.3 174,495 + DDA3937_RS00735 0.17 +0.7 174,495 + DDA3937_RS00735 0.17 +0.2 174,495 + DDA3937_RS00735 0.17 +1.1 174,495 + DDA3937_RS00735 0.17 -0.5 174,495 + DDA3937_RS00735 0.17 +0.3 174,495 + DDA3937_RS00735 0.17 +0.4 174,495 + DDA3937_RS00735 0.17 +0.9 174,495 + DDA3937_RS00735 0.17 +0.1 174,495 + DDA3937_RS00735 0.17 -0.4 174,495 + DDA3937_RS00735 0.17 +0.2 174,495 + DDA3937_RS00735 0.17 +0.8 174,495 + DDA3937_RS00735 0.17 +0.2 174,495 + DDA3937_RS00735 0.17 -0.4 174,495 + DDA3937_RS00735 0.17 +0.2 174,495 + DDA3937_RS00735 0.17 -0.5 174,496 - DDA3937_RS00735 0.17 +0.5 174,496 - DDA3937_RS00735 0.17 -0.0 174,496 - DDA3937_RS00735 0.17 +0.3 174,496 - DDA3937_RS00735 0.17 -1.2 174,496 - DDA3937_RS00735 0.17 +0.9 174,496 - DDA3937_RS00735 0.17 -0.5 174,496 - DDA3937_RS00735 0.17 +0.6 174,496 - DDA3937_RS00735 0.17 +0.6 174,496 - DDA3937_RS00735 0.17 +0.1 174,496 - DDA3937_RS00735 0.17 -1.5 174,496 - DDA3937_RS00735 0.17 +2.3 174,496 - DDA3937_RS00735 0.17 -1.7 174,496 - DDA3937_RS00735 0.17 -0.7 174,565 - DDA3937_RS00735 0.23 -1.3 174,565 - DDA3937_RS00735 0.23 -0.7 174,592 - DDA3937_RS00735 0.26 -0.6 174,606 + DDA3937_RS00735 0.27 -0.4 174,879 + DDA3937_RS00735 0.53 -0.1 174,879 + DDA3937_RS00735 0.53 +0.3 174,880 - DDA3937_RS00735 0.53 +0.6 174,978 + DDA3937_RS00735 0.62 -0.8 174,979 - DDA3937_RS00735 0.62 -0.2 175,349 + +0.1 175,349 + +0.1 175,350 - +0.4 175,350 - +0.7 175,350 - -0.1 175,351 + -1.4 175,351 + +0.6 175,351 + -0.7 175,352 - -0.5 175,352 - -0.7 175,352 - +0.3 175,706 + DDA3937_RS00740 0.43 -1.9 175,706 + DDA3937_RS00740 0.43 +0.1 175,723 + DDA3937_RS00740 0.45 -0.6 175,724 - DDA3937_RS00740 0.45 -0.3 175,960 + DDA3937_RS00740 0.77 -0.8 175,960 + DDA3937_RS00740 0.77 -0.4 176,027 + DDA3937_RS00740 0.86 -1.5 176,027 + DDA3937_RS00740 0.86 -0.1 176,027 + DDA3937_RS00740 0.86 -0.2 176,027 + DDA3937_RS00740 0.86 +0.3 176,028 - DDA3937_RS00740 0.86 -0.4 176,029 + DDA3937_RS00740 0.86 -1.7 176,030 - DDA3937_RS00740 0.86 -0.2 176,030 - DDA3937_RS00740 0.86 -0.1 176,122 + -0.5 176,123 - -1.4 176,138 + +0.2 176,138 + -0.3 176,138 + +0.3 176,144 + +0.1 176,144 + -0.7 176,148 + -0.2 176,235 - -0.4 176,329 - -2.6 176,510 + DDA3937_RS00745 0.18 +0.1 176,511 - DDA3937_RS00745 0.18 -0.9 176,511 - DDA3937_RS00745 0.18 +1.4 176,582 + DDA3937_RS00745 0.25 +0.3 176,798 - DDA3937_RS00745 0.48 -1.5 176,901 + DDA3937_RS00745 0.59 -0.6 176,902 - DDA3937_RS00745 0.59 +0.8 177,018 - DDA3937_RS00745 0.71 -0.5 177,018 - DDA3937_RS00745 0.71 -0.2 177,048 - DDA3937_RS00745 0.74 -0.0
Or see this region's nucleotide sequence