Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00635 and DDA3937_RS00640 are separated by 5 nucleotides DDA3937_RS00640 and DDA3937_RS00645 overlap by 11 nucleotides DDA3937_RS00645 and DDA3937_RS00650 are separated by 360 nucleotides
DDA3937_RS00635: DDA3937_RS00635 - signal recognition particle-docking protein FtsY, at 146,929 to 148,269
_RS00635
DDA3937_RS00640: DDA3937_RS00640 - cell division ATP-binding protein FtsE, at 148,275 to 148,943
_RS00640
DDA3937_RS00645: DDA3937_RS00645 - cell division protein FtsX, at 148,933 to 149,904
_RS00645
DDA3937_RS00650: DDA3937_RS00650 - RNA polymerase sigma factor RpoH, at 150,265 to 151,122
_RS00650
Position (kb) 148
149
150 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 148.267 kb on + strand at 148.267 kb on + strand at 148.268 kb on - strand at 148.268 kb on - strand at 148.400 kb on + strand, within DDA3937_RS00640 at 148.469 kb on + strand, within DDA3937_RS00640 at 148.564 kb on - strand, within DDA3937_RS00640 at 148.854 kb on - strand, within DDA3937_RS00640 at 148.941 kb on + strand at 148.942 kb on - strand at 149.018 kb on - strand at 149.018 kb on - strand at 149.043 kb on + strand, within DDA3937_RS00645 at 149.119 kb on + strand, within DDA3937_RS00645 at 149.185 kb on + strand, within DDA3937_RS00645 at 149.186 kb on - strand, within DDA3937_RS00645 at 149.186 kb on - strand, within DDA3937_RS00645 at 149.186 kb on - strand, within DDA3937_RS00645 at 149.269 kb on + strand, within DDA3937_RS00645 at 149.269 kb on + strand, within DDA3937_RS00645 at 149.270 kb on - strand, within DDA3937_RS00645 at 149.270 kb on - strand, within DDA3937_RS00645 at 149.270 kb on - strand, within DDA3937_RS00645 at 149.413 kb on - strand, within DDA3937_RS00645 at 149.413 kb on - strand, within DDA3937_RS00645 at 149.413 kb on - strand, within DDA3937_RS00645 at 149.413 kb on - strand, within DDA3937_RS00645 at 149.516 kb on + strand, within DDA3937_RS00645 at 149.516 kb on + strand, within DDA3937_RS00645 at 149.517 kb on - strand, within DDA3937_RS00645 at 149.533 kb on - strand, within DDA3937_RS00645 at 149.553 kb on - strand, within DDA3937_RS00645 at 149.778 kb on + strand, within DDA3937_RS00645 at 149.778 kb on + strand, within DDA3937_RS00645 at 149.778 kb on + strand, within DDA3937_RS00645 at 149.779 kb on - strand, within DDA3937_RS00645 at 149.779 kb on - strand, within DDA3937_RS00645 at 149.784 kb on + strand, within DDA3937_RS00645 at 149.785 kb on - strand, within DDA3937_RS00645 at 149.785 kb on - strand, within DDA3937_RS00645 at 149.874 kb on - strand at 149.882 kb on + strand at 149.882 kb on + strand at 149.902 kb on + strand at 149.909 kb on + strand at 149.940 kb on + strand at 149.940 kb on + strand at 149.940 kb on + strand at 149.980 kb on + strand at 149.981 kb on - strand at 150.058 kb on - strand at 150.062 kb on + strand at 150.062 kb on + strand at 150.062 kb on + strand at 150.062 kb on + strand at 150.063 kb on - strand at 150.072 kb on - strand at 150.105 kb on + strand at 150.115 kb on + strand at 150.116 kb on - strand at 150.116 kb on - strand at 150.153 kb on + strand at 150.153 kb on + strand at 150.153 kb on + strand at 150.153 kb on + strand at 150.153 kb on + strand at 150.153 kb on + strand at 150.153 kb on + strand at 150.153 kb on + strand at 150.153 kb on + strand at 150.153 kb on + strand at 150.153 kb on + strand at 150.153 kb on + strand at 150.174 kb on + strand at 150.174 kb on + strand at 150.174 kb on + strand at 150.174 kb on + strand at 150.174 kb on + strand at 150.174 kb on + strand at 150.174 kb on + strand at 150.174 kb on + strand at 150.174 kb on + strand at 150.174 kb on + strand at 150.174 kb on + strand at 150.174 kb on + strand at 150.174 kb on + strand at 150.175 kb on - strand at 150.175 kb on - strand at 150.175 kb on - strand at 150.175 kb on - strand at 150.186 kb on + strand at 150.208 kb on + strand at 150.208 kb on + strand at 150.208 kb on + strand at 150.209 kb on - strand at 150.239 kb on + strand at 150.250 kb on + strand at 150.250 kb on + strand at 150.250 kb on + strand at 150.250 kb on + strand at 150.250 kb on + strand at 150.250 kb on + strand at 150.250 kb on + strand at 150.276 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 148,267 + -0.9 148,267 + -1.2 148,268 - -2.0 148,268 - -0.8 148,400 + DDA3937_RS00640 0.19 -1.3 148,469 + DDA3937_RS00640 0.29 -1.9 148,564 - DDA3937_RS00640 0.43 -0.5 148,854 - DDA3937_RS00640 0.87 -1.7 148,941 + -1.5 148,942 - +0.1 149,018 - +0.3 149,018 - -0.3 149,043 + DDA3937_RS00645 0.11 +0.8 149,119 + DDA3937_RS00645 0.19 -2.5 149,185 + DDA3937_RS00645 0.26 -0.9 149,186 - DDA3937_RS00645 0.26 -0.4 149,186 - DDA3937_RS00645 0.26 +0.7 149,186 - DDA3937_RS00645 0.26 -3.4 149,269 + DDA3937_RS00645 0.35 -1.5 149,269 + DDA3937_RS00645 0.35 -1.3 149,270 - DDA3937_RS00645 0.35 -2.3 149,270 - DDA3937_RS00645 0.35 -3.0 149,270 - DDA3937_RS00645 0.35 +0.3 149,413 - DDA3937_RS00645 0.49 -2.9 149,413 - DDA3937_RS00645 0.49 -0.1 149,413 - DDA3937_RS00645 0.49 -1.7 149,413 - DDA3937_RS00645 0.49 -2.7 149,516 + DDA3937_RS00645 0.60 -0.7 149,516 + DDA3937_RS00645 0.60 -1.8 149,517 - DDA3937_RS00645 0.60 +0.5 149,533 - DDA3937_RS00645 0.62 -1.2 149,553 - DDA3937_RS00645 0.64 -2.6 149,778 + DDA3937_RS00645 0.87 -1.7 149,778 + DDA3937_RS00645 0.87 -1.6 149,778 + DDA3937_RS00645 0.87 -2.3 149,779 - DDA3937_RS00645 0.87 -2.3 149,779 - DDA3937_RS00645 0.87 +2.1 149,784 + DDA3937_RS00645 0.88 -0.6 149,785 - DDA3937_RS00645 0.88 +0.1 149,785 - DDA3937_RS00645 0.88 -0.3 149,874 - +0.2 149,882 + -0.6 149,882 + -0.2 149,902 + +0.7 149,909 + -0.3 149,940 + +0.2 149,940 + +0.3 149,940 + -1.0 149,980 + +0.1 149,981 - -0.2 150,058 - -0.0 150,062 + +0.6 150,062 + -0.8 150,062 + +0.1 150,062 + +0.8 150,063 - -0.2 150,072 - +0.3 150,105 + -0.2 150,115 + +0.1 150,116 - +0.6 150,116 - +0.5 150,153 + -0.3 150,153 + -0.4 150,153 + +0.2 150,153 + +0.1 150,153 + +0.7 150,153 + +0.1 150,153 + +0.5 150,153 + +0.1 150,153 + +1.1 150,153 + -0.3 150,153 + -0.3 150,153 + +0.2 150,174 + +0.2 150,174 + -0.3 150,174 + -0.3 150,174 + +0.8 150,174 + -1.3 150,174 + -0.2 150,174 + -0.5 150,174 + -0.3 150,174 + -0.9 150,174 + -0.1 150,174 + +0.9 150,174 + +0.7 150,174 + -0.6 150,175 - -1.5 150,175 - -1.3 150,175 - -0.3 150,175 - +2.1 150,186 + +0.6 150,208 + -0.7 150,208 + -1.5 150,208 + +0.5 150,209 - -0.6 150,239 + +0.1 150,250 + -0.5 150,250 + +0.7 150,250 + -0.8 150,250 + -0.1 150,250 + +0.3 150,250 + -0.5 150,250 + -0.4 150,276 + -1.3
Or see this region's nucleotide sequence