Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00540 and DDA3937_RS00545 are separated by 2 nucleotides DDA3937_RS00545 and DDA3937_RS00550 are separated by 12 nucleotides DDA3937_RS00550 and DDA3937_RS00555 are separated by 400 nucleotides
DDA3937_RS00540: DDA3937_RS00540 - cellulose biosynthesis protein BcsC, at 126,690 to 130,586
_RS00540
DDA3937_RS00545: DDA3937_RS00545 - cellulose synthase, at 130,589 to 131,056
_RS00545
DDA3937_RS00550: DDA3937_RS00550 - endoglucanase, at 131,069 to 132,067
_RS00550
DDA3937_RS00555: DDA3937_RS00555 - dicarboxylate/amino acid:cation symporter, at 132,468 to 133,754
_RS00555
Position (kb) 131
132
133 Strain fitness (log2 ratio) -2
-1
0
1
2 at 130.083 kb on - strand, within DDA3937_RS00540 at 130.110 kb on + strand, within DDA3937_RS00540 at 130.110 kb on + strand, within DDA3937_RS00540 at 130.110 kb on + strand, within DDA3937_RS00540 at 130.111 kb on - strand, within DDA3937_RS00540 at 130.111 kb on - strand, within DDA3937_RS00540 at 130.111 kb on - strand, within DDA3937_RS00540 at 130.111 kb on - strand, within DDA3937_RS00540 at 130.113 kb on - strand, within DDA3937_RS00540 at 130.194 kb on + strand, within DDA3937_RS00540 at 130.194 kb on + strand, within DDA3937_RS00540 at 130.194 kb on + strand, within DDA3937_RS00540 at 130.194 kb on + strand, within DDA3937_RS00540 at 130.194 kb on + strand, within DDA3937_RS00540 at 130.194 kb on + strand, within DDA3937_RS00540 at 130.195 kb on - strand, within DDA3937_RS00540 at 130.197 kb on + strand at 130.197 kb on + strand at 130.197 kb on + strand at 130.197 kb on + strand at 130.197 kb on + strand at 130.197 kb on + strand at 130.197 kb on + strand at 130.198 kb on - strand at 130.198 kb on - strand at 130.198 kb on - strand at 130.198 kb on - strand at 130.203 kb on + strand at 130.203 kb on + strand at 130.204 kb on - strand at 130.218 kb on + strand at 130.236 kb on + strand at 130.236 kb on + strand at 130.236 kb on + strand at 130.237 kb on - strand at 130.237 kb on - strand at 130.237 kb on - strand at 130.276 kb on - strand at 130.323 kb on + strand at 130.324 kb on - strand at 130.324 kb on - strand at 130.345 kb on - strand at 130.433 kb on + strand at 130.434 kb on - strand at 130.434 kb on - strand at 130.449 kb on + strand at 130.449 kb on + strand at 130.449 kb on + strand at 130.450 kb on - strand at 130.450 kb on - strand at 130.451 kb on + strand at 130.515 kb on + strand at 130.516 kb on - strand at 130.533 kb on + strand at 130.533 kb on + strand at 130.533 kb on + strand at 130.533 kb on + strand at 130.533 kb on + strand at 130.533 kb on + strand at 130.534 kb on - strand at 130.534 kb on - strand at 130.557 kb on + strand at 130.558 kb on - strand at 130.558 kb on - strand at 130.584 kb on + strand at 130.584 kb on + strand at 130.584 kb on + strand at 130.584 kb on + strand at 130.585 kb on - strand at 130.585 kb on - strand at 130.585 kb on - strand at 130.585 kb on - strand at 130.585 kb on - strand at 130.585 kb on - strand at 130.585 kb on - strand at 130.585 kb on - strand at 130.619 kb on + strand at 130.619 kb on + strand at 130.619 kb on + strand at 130.619 kb on + strand at 130.619 kb on + strand at 130.620 kb on - strand at 130.620 kb on - strand at 130.620 kb on - strand at 130.620 kb on - strand at 130.731 kb on + strand, within DDA3937_RS00545 at 130.731 kb on + strand, within DDA3937_RS00545 at 130.731 kb on + strand, within DDA3937_RS00545 at 130.731 kb on + strand, within DDA3937_RS00545 at 130.732 kb on - strand, within DDA3937_RS00545 at 130.732 kb on - strand, within DDA3937_RS00545 at 130.732 kb on - strand, within DDA3937_RS00545 at 130.801 kb on + strand, within DDA3937_RS00545 at 130.871 kb on + strand, within DDA3937_RS00545 at 130.871 kb on + strand, within DDA3937_RS00545 at 130.872 kb on - strand, within DDA3937_RS00545 at 130.872 kb on - strand, within DDA3937_RS00545 at 130.955 kb on + strand, within DDA3937_RS00545 at 130.955 kb on + strand, within DDA3937_RS00545 at 130.956 kb on - strand, within DDA3937_RS00545 at 131.067 kb on + strand at 131.068 kb on - strand at 131.068 kb on - strand at 131.157 kb on - strand at 131.159 kb on - strand at 131.206 kb on + strand, within DDA3937_RS00550 at 131.207 kb on - strand, within DDA3937_RS00550 at 131.261 kb on + strand, within DDA3937_RS00550 at 131.261 kb on + strand, within DDA3937_RS00550 at 131.262 kb on - strand, within DDA3937_RS00550 at 131.262 kb on - strand at 131.339 kb on + strand, within DDA3937_RS00550 at 131.339 kb on + strand, within DDA3937_RS00550 at 131.339 kb on + strand, within DDA3937_RS00550 at 131.380 kb on + strand, within DDA3937_RS00550 at 131.380 kb on + strand, within DDA3937_RS00550 at 131.440 kb on + strand, within DDA3937_RS00550 at 131.440 kb on + strand, within DDA3937_RS00550 at 131.440 kb on + strand, within DDA3937_RS00550 at 131.440 kb on + strand, within DDA3937_RS00550 at 131.460 kb on - strand, within DDA3937_RS00550 at 131.506 kb on + strand, within DDA3937_RS00550 at 131.506 kb on + strand, within DDA3937_RS00550 at 131.506 kb on + strand, within DDA3937_RS00550 at 131.507 kb on - strand, within DDA3937_RS00550 at 131.507 kb on - strand, within DDA3937_RS00550 at 131.507 kb on - strand, within DDA3937_RS00550 at 131.570 kb on + strand, within DDA3937_RS00550 at 131.570 kb on + strand, within DDA3937_RS00550 at 131.570 kb on + strand, within DDA3937_RS00550 at 131.570 kb on + strand, within DDA3937_RS00550 at 131.570 kb on + strand, within DDA3937_RS00550 at 131.570 kb on + strand, within DDA3937_RS00550 at 131.570 kb on + strand, within DDA3937_RS00550 at 131.570 kb on + strand, within DDA3937_RS00550 at 131.570 kb on + strand, within DDA3937_RS00550 at 131.570 kb on + strand, within DDA3937_RS00550 at 131.570 kb on + strand, within DDA3937_RS00550 at 131.570 kb on + strand at 131.571 kb on - strand, within DDA3937_RS00550 at 131.571 kb on - strand, within DDA3937_RS00550 at 131.571 kb on - strand, within DDA3937_RS00550 at 131.571 kb on - strand, within DDA3937_RS00550 at 131.571 kb on - strand, within DDA3937_RS00550 at 131.571 kb on - strand, within DDA3937_RS00550 at 131.571 kb on - strand, within DDA3937_RS00550 at 131.571 kb on - strand, within DDA3937_RS00550 at 131.571 kb on - strand, within DDA3937_RS00550 at 131.571 kb on - strand, within DDA3937_RS00550 at 131.592 kb on - strand, within DDA3937_RS00550 at 131.807 kb on + strand, within DDA3937_RS00550 at 131.807 kb on + strand, within DDA3937_RS00550 at 131.807 kb on + strand, within DDA3937_RS00550 at 131.808 kb on - strand, within DDA3937_RS00550 at 131.813 kb on + strand, within DDA3937_RS00550 at 131.813 kb on + strand, within DDA3937_RS00550 at 131.819 kb on + strand, within DDA3937_RS00550 at 131.819 kb on + strand, within DDA3937_RS00550 at 131.819 kb on + strand, within DDA3937_RS00550 at 131.858 kb on + strand, within DDA3937_RS00550 at 131.858 kb on + strand, within DDA3937_RS00550 at 131.859 kb on - strand, within DDA3937_RS00550 at 131.866 kb on + strand, within DDA3937_RS00550 at 131.866 kb on + strand, within DDA3937_RS00550 at 131.867 kb on - strand, within DDA3937_RS00550 at 131.867 kb on - strand, within DDA3937_RS00550 at 131.867 kb on - strand, within DDA3937_RS00550 at 131.867 kb on - strand, within DDA3937_RS00550 at 131.870 kb on + strand, within DDA3937_RS00550 at 131.871 kb on - strand, within DDA3937_RS00550 at 131.914 kb on + strand, within DDA3937_RS00550 at 131.915 kb on - strand, within DDA3937_RS00550 at 131.915 kb on - strand, within DDA3937_RS00550 at 131.915 kb on - strand, within DDA3937_RS00550 at 131.927 kb on + strand, within DDA3937_RS00550 at 131.927 kb on + strand, within DDA3937_RS00550 at 131.928 kb on - strand, within DDA3937_RS00550 at 131.928 kb on - strand, within DDA3937_RS00550 at 131.928 kb on - strand, within DDA3937_RS00550 at 131.928 kb on - strand, within DDA3937_RS00550 at 131.932 kb on + strand, within DDA3937_RS00550 at 131.932 kb on + strand, within DDA3937_RS00550 at 131.932 kb on + strand, within DDA3937_RS00550 at 131.933 kb on - strand, within DDA3937_RS00550 at 132.017 kb on + strand at 132.017 kb on + strand at 132.018 kb on - strand at 132.020 kb on + strand at 132.061 kb on + strand at 132.066 kb on - strand at 132.071 kb on + strand at 132.072 kb on - strand at 132.072 kb on - strand at 132.072 kb on - strand at 132.072 kb on - strand at 132.082 kb on + strand at 132.083 kb on - strand at 132.125 kb on - strand at 132.170 kb on + strand at 132.284 kb on - strand at 132.354 kb on - strand at 132.354 kb on - strand at 132.359 kb on + strand at 132.361 kb on + strand at 132.361 kb on + strand at 132.368 kb on - strand at 132.379 kb on + strand at 132.468 kb on - strand at 132.518 kb on + strand at 132.598 kb on + strand, within DDA3937_RS00555 at 132.599 kb on - strand, within DDA3937_RS00555 at 132.632 kb on + strand, within DDA3937_RS00555 at 132.633 kb on - strand, within DDA3937_RS00555 at 132.665 kb on + strand, within DDA3937_RS00555 at 132.723 kb on - strand, within DDA3937_RS00555 at 132.723 kb on - strand, within DDA3937_RS00555 at 132.826 kb on - strand, within DDA3937_RS00555 at 132.826 kb on - strand, within DDA3937_RS00555 at 132.826 kb on - strand, within DDA3937_RS00555 at 132.884 kb on + strand, within DDA3937_RS00555 at 132.885 kb on - strand, within DDA3937_RS00555
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 130,083 - DDA3937_RS00540 0.87 -0.3 130,110 + DDA3937_RS00540 0.88 -0.6 130,110 + DDA3937_RS00540 0.88 +1.1 130,110 + DDA3937_RS00540 0.88 -0.7 130,111 - DDA3937_RS00540 0.88 -0.2 130,111 - DDA3937_RS00540 0.88 +0.3 130,111 - DDA3937_RS00540 0.88 -1.4 130,111 - DDA3937_RS00540 0.88 -0.8 130,113 - DDA3937_RS00540 0.88 +0.8 130,194 + DDA3937_RS00540 0.90 +0.3 130,194 + DDA3937_RS00540 0.90 -0.2 130,194 + DDA3937_RS00540 0.90 -0.6 130,194 + DDA3937_RS00540 0.90 +0.5 130,194 + DDA3937_RS00540 0.90 +0.3 130,194 + DDA3937_RS00540 0.90 -1.3 130,195 - DDA3937_RS00540 0.90 -0.7 130,197 + -0.8 130,197 + +0.3 130,197 + +1.7 130,197 + +0.7 130,197 + -0.7 130,197 + +0.7 130,197 + +1.2 130,198 - +0.7 130,198 - +0.1 130,198 - -0.8 130,198 - +0.4 130,203 + +0.2 130,203 + +0.7 130,204 - +0.1 130,218 + -0.1 130,236 + -1.6 130,236 + +0.7 130,236 + +0.8 130,237 - +0.2 130,237 - -0.2 130,237 - -0.6 130,276 - +0.4 130,323 + -1.3 130,324 - -0.4 130,324 - -0.3 130,345 - +0.1 130,433 + -0.4 130,434 - +0.4 130,434 - -0.4 130,449 + +1.4 130,449 + +0.0 130,449 + -0.4 130,450 - +0.3 130,450 - -0.5 130,451 + -1.4 130,515 + -1.3 130,516 - -0.0 130,533 + +0.2 130,533 + +0.1 130,533 + +0.2 130,533 + +0.7 130,533 + -0.1 130,533 + +0.1 130,534 - +0.4 130,534 - +1.8 130,557 + -0.1 130,558 - -0.3 130,558 - -1.5 130,584 + -1.5 130,584 + -0.3 130,584 + -0.8 130,584 + -0.9 130,585 - +0.7 130,585 - -0.0 130,585 - -0.1 130,585 - -0.3 130,585 - +1.1 130,585 - +0.4 130,585 - -0.5 130,585 - +0.3 130,619 + -1.5 130,619 + -0.3 130,619 + +0.2 130,619 + +0.0 130,619 + -0.3 130,620 - -0.3 130,620 - -0.0 130,620 - +0.2 130,620 - -1.9 130,731 + DDA3937_RS00545 0.30 +0.4 130,731 + DDA3937_RS00545 0.30 +0.3 130,731 + DDA3937_RS00545 0.30 -0.8 130,731 + DDA3937_RS00545 0.30 +0.5 130,732 - DDA3937_RS00545 0.31 +0.8 130,732 - DDA3937_RS00545 0.31 -0.5 130,732 - DDA3937_RS00545 0.31 -0.5 130,801 + DDA3937_RS00545 0.45 +0.7 130,871 + DDA3937_RS00545 0.60 +0.3 130,871 + DDA3937_RS00545 0.60 +1.1 130,872 - DDA3937_RS00545 0.60 -0.5 130,872 - DDA3937_RS00545 0.60 +1.2 130,955 + DDA3937_RS00545 0.78 -0.2 130,955 + DDA3937_RS00545 0.78 +0.7 130,956 - DDA3937_RS00545 0.78 -0.4 131,067 + -0.4 131,068 - -0.4 131,068 - +0.4 131,157 - +0.1 131,159 - -0.3 131,206 + DDA3937_RS00550 0.14 -0.3 131,207 - DDA3937_RS00550 0.14 +0.1 131,261 + DDA3937_RS00550 0.19 -0.4 131,261 + DDA3937_RS00550 0.19 +1.1 131,262 - DDA3937_RS00550 0.19 -1.0 131,262 - -0.5 131,339 + DDA3937_RS00550 0.27 -0.0 131,339 + DDA3937_RS00550 0.27 -1.3 131,339 + DDA3937_RS00550 0.27 +0.7 131,380 + DDA3937_RS00550 0.31 -1.5 131,380 + DDA3937_RS00550 0.31 +1.0 131,440 + DDA3937_RS00550 0.37 -0.9 131,440 + DDA3937_RS00550 0.37 -0.7 131,440 + DDA3937_RS00550 0.37 -0.5 131,440 + DDA3937_RS00550 0.37 -0.9 131,460 - DDA3937_RS00550 0.39 -1.6 131,506 + DDA3937_RS00550 0.44 +0.7 131,506 + DDA3937_RS00550 0.44 -0.5 131,506 + DDA3937_RS00550 0.44 -0.5 131,507 - DDA3937_RS00550 0.44 -1.1 131,507 - DDA3937_RS00550 0.44 +0.6 131,507 - DDA3937_RS00550 0.44 -0.3 131,570 + DDA3937_RS00550 0.50 -1.3 131,570 + DDA3937_RS00550 0.50 -0.3 131,570 + DDA3937_RS00550 0.50 -0.3 131,570 + DDA3937_RS00550 0.50 +1.5 131,570 + DDA3937_RS00550 0.50 -0.0 131,570 + DDA3937_RS00550 0.50 -0.8 131,570 + DDA3937_RS00550 0.50 -0.8 131,570 + DDA3937_RS00550 0.50 +0.3 131,570 + DDA3937_RS00550 0.50 -0.4 131,570 + DDA3937_RS00550 0.50 -1.7 131,570 + DDA3937_RS00550 0.50 -1.3 131,570 + +1.1 131,571 - DDA3937_RS00550 0.50 +0.2 131,571 - DDA3937_RS00550 0.50 +0.0 131,571 - DDA3937_RS00550 0.50 -0.6 131,571 - DDA3937_RS00550 0.50 +0.6 131,571 - DDA3937_RS00550 0.50 -1.0 131,571 - DDA3937_RS00550 0.50 +0.6 131,571 - DDA3937_RS00550 0.50 -1.5 131,571 - DDA3937_RS00550 0.50 +0.8 131,571 - DDA3937_RS00550 0.50 +0.5 131,571 - DDA3937_RS00550 0.50 -0.7 131,592 - DDA3937_RS00550 0.52 -0.0 131,807 + DDA3937_RS00550 0.74 -2.5 131,807 + DDA3937_RS00550 0.74 +1.5 131,807 + DDA3937_RS00550 0.74 -0.4 131,808 - DDA3937_RS00550 0.74 +0.2 131,813 + DDA3937_RS00550 0.74 +1.1 131,813 + DDA3937_RS00550 0.74 +0.5 131,819 + DDA3937_RS00550 0.75 -0.8 131,819 + DDA3937_RS00550 0.75 +0.6 131,819 + DDA3937_RS00550 0.75 -0.4 131,858 + DDA3937_RS00550 0.79 +0.4 131,858 + DDA3937_RS00550 0.79 -2.0 131,859 - DDA3937_RS00550 0.79 -2.1 131,866 + DDA3937_RS00550 0.80 -0.8 131,866 + DDA3937_RS00550 0.80 -2.5 131,867 - DDA3937_RS00550 0.80 -0.8 131,867 - DDA3937_RS00550 0.80 -0.8 131,867 - DDA3937_RS00550 0.80 -0.2 131,867 - DDA3937_RS00550 0.80 -0.9 131,870 + DDA3937_RS00550 0.80 +0.1 131,871 - DDA3937_RS00550 0.80 +0.1 131,914 + DDA3937_RS00550 0.85 +0.2 131,915 - DDA3937_RS00550 0.85 -1.1 131,915 - DDA3937_RS00550 0.85 -0.7 131,915 - DDA3937_RS00550 0.85 -1.3 131,927 + DDA3937_RS00550 0.86 +0.1 131,927 + DDA3937_RS00550 0.86 +1.5 131,928 - DDA3937_RS00550 0.86 -0.6 131,928 - DDA3937_RS00550 0.86 -0.2 131,928 - DDA3937_RS00550 0.86 -0.1 131,928 - DDA3937_RS00550 0.86 -0.3 131,932 + DDA3937_RS00550 0.86 -0.1 131,932 + DDA3937_RS00550 0.86 -0.5 131,932 + DDA3937_RS00550 0.86 -0.4 131,933 - DDA3937_RS00550 0.86 -0.8 132,017 + -0.8 132,017 + -0.2 132,018 - -0.1 132,020 + -0.2 132,061 + -0.4 132,066 - +0.8 132,071 + +0.4 132,072 - -1.5 132,072 - +0.7 132,072 - +0.5 132,072 - +0.2 132,082 + +0.6 132,083 - +0.0 132,125 - -0.2 132,170 + -0.4 132,284 - -1.1 132,354 - -0.9 132,354 - -1.0 132,359 + +1.5 132,361 + -1.3 132,361 + +0.2 132,368 - +0.3 132,379 + -0.3 132,468 - +0.1 132,518 + -0.0 132,598 + DDA3937_RS00555 0.10 +0.1 132,599 - DDA3937_RS00555 0.10 -1.4 132,632 + DDA3937_RS00555 0.13 -2.1 132,633 - DDA3937_RS00555 0.13 +0.3 132,665 + DDA3937_RS00555 0.15 -1.1 132,723 - DDA3937_RS00555 0.20 -0.1 132,723 - DDA3937_RS00555 0.20 +0.5 132,826 - DDA3937_RS00555 0.28 -1.0 132,826 - DDA3937_RS00555 0.28 +0.1 132,826 - DDA3937_RS00555 0.28 -1.7 132,884 + DDA3937_RS00555 0.32 +0.7 132,885 - DDA3937_RS00555 0.32 -0.4
Or see this region's nucleotide sequence