Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS00490

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
114,565	+		DDA3937_RS00480	0.70	-0.2
114,565	+		DDA3937_RS00480	0.70	+0.5
114,565	+		DDA3937_RS00480	0.70	+0.7
114,565	+		DDA3937_RS00480	0.70	+1.1
114,565	+		DDA3937_RS00480	0.70	-3.3
114,565	+		DDA3937_RS00480	0.70	+0.6
114,566	-		DDA3937_RS00480	0.70	+0.7
114,566	-		DDA3937_RS00480	0.70	+0.5
114,566	-		DDA3937_RS00480	0.70	-0.4
114,628	+		DDA3937_RS00480	0.76	+0.6
114,629	-		DDA3937_RS00480	0.77	-0.9
114,629	-		DDA3937_RS00480	0.77	+0.7
114,857	+				+0.5
114,857	+				+0.2
114,857	+				+1.7
114,858	-				-0.5
114,874	+				-0.9
114,874	+				+0.1
114,874	+				-2.4
114,874	+				-0.4
114,878	+				-0.9
114,878	+				+0.1
114,878	+				+0.7
114,878	+				-0.7
114,878	+				-0.9
114,878	+				-1.3
114,878	+				-0.2
114,879	-				+1.3
114,879	-				-2.7
114,879	-				+1.9
114,879	-				-0.4
114,933	+				-0.3
114,933	+				-1.5
114,966	+				+0.1
114,967	-				-0.3
114,972	-				-0.7
114,972	-				+0.2
115,040	+		DDA3937_RS00485	0.13	-0.8
115,040	+		DDA3937_RS00485	0.13	+0.1
115,040	+		DDA3937_RS00485	0.13	-0.4
115,040	+		DDA3937_RS00485	0.13	-0.0
115,040	+		DDA3937_RS00485	0.13	-0.3
115,040	+		DDA3937_RS00485	0.13	+1.1
115,040	+		DDA3937_RS00485	0.13	-0.5
115,040	+		DDA3937_RS00485	0.13	+0.3
115,040	+		DDA3937_RS00485	0.13	-0.5
115,040	+		DDA3937_RS00485	0.13	+0.5
115,040	+		DDA3937_RS00485	0.13	-0.4
115,041	-		DDA3937_RS00485	0.13	-1.0
115,041	-		DDA3937_RS00485	0.13	+0.0
115,041	-		DDA3937_RS00485	0.13	-0.3
115,041	-		DDA3937_RS00485	0.13	-0.3
115,041	-		DDA3937_RS00485	0.13	+1.4
115,084	-		DDA3937_RS00485	0.21	-0.4
115,085	+		DDA3937_RS00485	0.22	-0.4
115,085	+		DDA3937_RS00485	0.22	-1.9
115,085	+		DDA3937_RS00485	0.22	-0.1
115,085	+		DDA3937_RS00485	0.22	+0.5
115,085	+		DDA3937_RS00485	0.22	-0.7
115,085	+		DDA3937_RS00485	0.22	-0.3
115,085	+		DDA3937_RS00485	0.22	-0.1
115,085	+		DDA3937_RS00485	0.22	+0.7
115,086	-		DDA3937_RS00485	0.22	+0.0
115,086	-		DDA3937_RS00485	0.22	+0.3
115,086	-		DDA3937_RS00485	0.22	-0.3
115,086	-		DDA3937_RS00485	0.22	+0.5
115,086	-		DDA3937_RS00485	0.22	+0.9
115,086	-		DDA3937_RS00485	0.22	+0.8
115,086	-		DDA3937_RS00485	0.22	+0.7
115,086	-		DDA3937_RS00485	0.22	-0.3
115,086	-		DDA3937_RS00485	0.22	-1.1
115,086	-		DDA3937_RS00485	0.22	-0.7
115,129	+		DDA3937_RS00485	0.30	+0.6
115,129	+		DDA3937_RS00485	0.30	+0.1
115,129	+		DDA3937_RS00485	0.30	-0.5
115,129	+		DDA3937_RS00485	0.30	+0.4
115,129	+		DDA3937_RS00485	0.30	-0.0
115,129	+		DDA3937_RS00485	0.30	-0.7
115,129	+		DDA3937_RS00485	0.30	-0.0
115,129	+		DDA3937_RS00485	0.30	-0.1
115,129	+		DDA3937_RS00485	0.30	-1.5
115,129	+		DDA3937_RS00485	0.30	+1.7
115,130	-		DDA3937_RS00485	0.30	+0.3
115,130	-		DDA3937_RS00485	0.30	+1.6
115,130	-		DDA3937_RS00485	0.30	-0.5
115,130	-		DDA3937_RS00485	0.30	-1.3
115,130	-		DDA3937_RS00485	0.30	-0.8
115,130	-		DDA3937_RS00485	0.30	+0.5
115,134	+		DDA3937_RS00485	0.31	-0.2
115,207	-		DDA3937_RS00485	0.44	-1.0
115,238	+		DDA3937_RS00485	0.50	-0.9
115,238	+		DDA3937_RS00485	0.50	-0.4
115,238	+		DDA3937_RS00485	0.50	+0.9
115,238	+		DDA3937_RS00485	0.50	+1.1
115,238	+		DDA3937_RS00485	0.50	-0.4
115,238	+		DDA3937_RS00485	0.50	-0.2
115,239	-		DDA3937_RS00485	0.50	-0.5
115,239	-		DDA3937_RS00485	0.50	+2.4
115,239	-		DDA3937_RS00485	0.50	-0.6
115,239	-		DDA3937_RS00485	0.50	-0.6
115,260	+		DDA3937_RS00485	0.54	-2.7
115,261	-		DDA3937_RS00485	0.54	+0.8
115,279	-		DDA3937_RS00485	0.58	+1.0
115,310	+		DDA3937_RS00485	0.64	+0.5
115,310	+		DDA3937_RS00485	0.64	-0.7
115,310	+		DDA3937_RS00485	0.64	+0.1
115,310	+		DDA3937_RS00485	0.64	-0.8
115,311	-		DDA3937_RS00485	0.64	+0.2
115,311	-		DDA3937_RS00485	0.64	+0.3
115,311	-		DDA3937_RS00485	0.64	-0.4
115,311	-		DDA3937_RS00485	0.64	+0.2
115,352	+		DDA3937_RS00485	0.72	+0.3
115,352	+		DDA3937_RS00485	0.72	+0.2
115,353	-		DDA3937_RS00485	0.72	-0.2
115,353	-		DDA3937_RS00485	0.72	-0.5
115,416	+		DDA3937_RS00485	0.84	+0.6
115,457	+				+0.7
115,457	+				-0.4
115,458	-				+2.1
115,458	-				-1.2
115,458	-				-1.3
115,493	-				-0.0
115,515	+				-0.6
115,515	+				-1.0
115,515	+				-0.8
115,515	+				-0.5
115,516	-				-1.3
115,516	-				-0.5
115,518	-				+0.1
115,529	-				-0.8
115,529	-				-0.9
115,538	-				+0.0
115,628	+		DDA3937_RS00490	0.29	-0.4
115,628	+		DDA3937_RS00490	0.29	-1.3
115,628	+		DDA3937_RS00490	0.29	-0.9
115,629	-		DDA3937_RS00490	0.29	+0.3
115,629	-		DDA3937_RS00490	0.29	-0.8
115,674	+		DDA3937_RS00490	0.49	-0.5
115,674	+		DDA3937_RS00490	0.49	-0.9
115,716	-		DDA3937_RS00490	0.68	-1.4
115,751	+		DDA3937_RS00490	0.83	-1.7
115,751	+		DDA3937_RS00490	0.83	-1.5
115,752	-		DDA3937_RS00490	0.83	-0.3
115,757	-		DDA3937_RS00490	0.86	+0.8
115,757	-		DDA3937_RS00490	0.86	-1.4
115,789	+				-0.5
115,789	+				-1.0
115,789	+				-2.1
115,789	+				+0.1
115,790	-				+0.3
115,790	-				+0.2
115,790	-				-1.7
115,790	-				+0.2
115,790	-				+0.3
115,790	-				-0.2
115,815	+				-1.3
115,815	+				+1.2
115,815	+				-0.3
115,816	-				-0.3
115,827	+				-0.9
115,827	+				-0.7
115,827	+				+0.7
115,827	+				+0.2
115,828	-				-0.2
115,828	-				+0.4
115,828	-				-0.3
115,879	-				+2.7
115,887	+				-0.7
115,888	-				+1.3
115,888	-				-0.9
115,907	+				+0.8
115,907	+				-0.6
115,908	-				+0.6
115,944	+		DDA3937_RS00495	0.14	+1.7
115,997	+		DDA3937_RS00495	0.33	-0.9
115,997	+		DDA3937_RS00495	0.33	-1.8
115,997	+		DDA3937_RS00495	0.33	+0.2
115,997	+		DDA3937_RS00495	0.33	-0.0
115,997	+		DDA3937_RS00495	0.33	-1.0
115,997	+		DDA3937_RS00495	0.33	-0.5
115,997	+		DDA3937_RS00495	0.33	+0.2
115,997	+		DDA3937_RS00495	0.33	-0.1
115,997	+				+0.5
115,998	-		DDA3937_RS00495	0.34	+0.1
116,028	+		DDA3937_RS00495	0.45	-0.3
116,028	+		DDA3937_RS00495	0.45	-0.5
116,029	-		DDA3937_RS00495	0.45	-0.9
116,029	-		DDA3937_RS00495	0.45	+0.4
116,035	-		DDA3937_RS00495	0.47	-0.3
116,035	-		DDA3937_RS00495	0.47	+0.3
116,035	-		DDA3937_RS00495	0.47	+0.8
116,156	+				+1.1
116,167	+				+0.2
116,167	+				+0.3
116,167	+				+1.1
116,178	+				+0.1
116,178	+				+0.2
116,178	+				-0.3
116,178	+				-0.9
116,178	+				+0.9
116,178	+				-0.1
116,202	-				-0.4
116,211	+				+0.2
116,211	+				-0.4
116,211	+				-1.3
116,212	-				-2.0
116,212	-				+0.9
116,212	-				-0.3
116,224	-				-0.7
116,243	-				-1.6
116,249	+				+0.3
116,249	+				+0.3
116,254	+				+0.2
116,254	+				+0.6
116,254	+				+0.4
116,254	+				-1.3
116,255	-				-0.1
116,255	-				-1.1
116,257	+				+1.4
116,257	+				+0.2
116,264	+				+1.3
116,264	+				+0.1
116,265	-				-0.9
116,265	-				-0.9
116,265	-				-0.6
116,265	-				+1.3
116,265	-				+0.2
116,277	+				+1.1
116,277	+				+0.6
116,341	+				+0.0
116,351	+				-0.1
116,351	+				-0.3
116,352	-				+1.0
116,422	+		DDA3937_RS00500	0.10	+0.1
116,422	+		DDA3937_RS00500	0.10	+0.2
116,423	-		DDA3937_RS00500	0.10	-0.5
116,559	+		DDA3937_RS00500	0.20	+0.0
116,559	+		DDA3937_RS00500	0.20	-0.1
116,560	-		DDA3937_RS00500	0.20	-0.3
116,560	-		DDA3937_RS00500	0.20	-0.3
116,651	+		DDA3937_RS00500	0.26	+0.1
116,652	-		DDA3937_RS00500	0.26	+0.3