Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00465 and DDA3937_RS00470 are separated by 12 nucleotides DDA3937_RS00470 and DDA3937_RS00475 are separated by 28 nucleotides DDA3937_RS00475 and DDA3937_RS00480 overlap by 4 nucleotides
DDA3937_RS00465: DDA3937_RS00465 - dipeptide ABC transporter permease DppB, at 110,917 to 111,936
_RS00465
DDA3937_RS00470: DDA3937_RS00470 - dipeptide ABC transporter permease DppC, at 111,949 to 112,851
_RS00470
DDA3937_RS00475: DDA3937_RS00475 - dipeptide ABC transporter ATP-binding protein, at 112,880 to 113,860
_RS00475
DDA3937_RS00480: DDA3937_RS00480 - ABC transporter ATP-binding protein, at 113,857 to 114,864
_RS00480
Position (kb) 112
113
114 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 111.893 kb on + strand at 111.893 kb on + strand at 111.893 kb on + strand at 111.893 kb on + strand at 111.898 kb on + strand at 111.899 kb on - strand at 111.934 kb on + strand at 111.934 kb on + strand at 111.934 kb on + strand at 111.935 kb on - strand at 112.022 kb on - strand at 112.022 kb on - strand at 112.032 kb on + strand at 112.032 kb on + strand at 112.032 kb on + strand at 112.032 kb on + strand at 112.033 kb on - strand at 112.035 kb on + strand at 112.035 kb on + strand at 112.036 kb on - strand at 112.060 kb on + strand, within DDA3937_RS00470 at 112.060 kb on + strand, within DDA3937_RS00470 at 112.060 kb on + strand, within DDA3937_RS00470 at 112.060 kb on + strand, within DDA3937_RS00470 at 112.061 kb on - strand, within DDA3937_RS00470 at 112.061 kb on - strand, within DDA3937_RS00470 at 112.061 kb on - strand, within DDA3937_RS00470 at 112.147 kb on - strand, within DDA3937_RS00470 at 112.183 kb on + strand, within DDA3937_RS00470 at 112.183 kb on + strand, within DDA3937_RS00470 at 112.183 kb on + strand, within DDA3937_RS00470 at 112.183 kb on + strand, within DDA3937_RS00470 at 112.183 kb on + strand, within DDA3937_RS00470 at 112.183 kb on + strand, within DDA3937_RS00470 at 112.184 kb on - strand, within DDA3937_RS00470 at 112.184 kb on - strand, within DDA3937_RS00470 at 112.184 kb on - strand, within DDA3937_RS00470 at 112.184 kb on - strand, within DDA3937_RS00470 at 112.184 kb on - strand, within DDA3937_RS00470 at 112.234 kb on + strand, within DDA3937_RS00470 at 112.234 kb on + strand, within DDA3937_RS00470 at 112.235 kb on - strand, within DDA3937_RS00470 at 112.474 kb on + strand, within DDA3937_RS00470 at 112.474 kb on + strand, within DDA3937_RS00470 at 112.474 kb on + strand, within DDA3937_RS00470 at 112.475 kb on - strand, within DDA3937_RS00470 at 112.475 kb on - strand, within DDA3937_RS00470 at 112.475 kb on - strand, within DDA3937_RS00470 at 112.475 kb on - strand, within DDA3937_RS00470 at 112.475 kb on - strand, within DDA3937_RS00470 at 112.475 kb on - strand at 112.523 kb on - strand, within DDA3937_RS00470 at 112.523 kb on - strand, within DDA3937_RS00470 at 112.788 kb on - strand at 112.797 kb on + strand at 112.797 kb on + strand at 112.797 kb on + strand at 112.797 kb on + strand at 112.798 kb on - strand at 112.849 kb on + strand at 112.849 kb on + strand at 112.865 kb on + strand at 112.865 kb on + strand at 112.865 kb on + strand at 112.865 kb on + strand at 112.866 kb on - strand at 112.867 kb on + strand at 112.867 kb on + strand at 112.868 kb on - strand at 112.868 kb on - strand at 112.868 kb on - strand at 112.868 kb on - strand at 112.868 kb on - strand at 112.873 kb on + strand at 112.874 kb on - strand at 112.896 kb on + strand at 112.897 kb on - strand at 112.954 kb on + strand at 112.962 kb on - strand at 112.962 kb on - strand at 113.195 kb on + strand, within DDA3937_RS00475 at 113.196 kb on - strand, within DDA3937_RS00475 at 113.215 kb on + strand, within DDA3937_RS00475 at 113.561 kb on + strand, within DDA3937_RS00475 at 113.561 kb on + strand, within DDA3937_RS00475 at 113.561 kb on + strand, within DDA3937_RS00475 at 113.562 kb on - strand, within DDA3937_RS00475 at 113.562 kb on - strand, within DDA3937_RS00475 at 113.562 kb on - strand, within DDA3937_RS00475 at 113.624 kb on + strand, within DDA3937_RS00475 at 113.624 kb on + strand, within DDA3937_RS00475 at 113.624 kb on + strand, within DDA3937_RS00475 at 113.625 kb on - strand, within DDA3937_RS00475 at 113.625 kb on - strand, within DDA3937_RS00475 at 113.625 kb on - strand, within DDA3937_RS00475 at 113.625 kb on - strand, within DDA3937_RS00475 at 113.711 kb on + strand, within DDA3937_RS00475 at 113.712 kb on - strand, within DDA3937_RS00475 at 113.824 kb on + strand at 113.825 kb on - strand at 113.825 kb on - strand at 113.856 kb on + strand at 113.857 kb on - strand at 113.857 kb on - strand at 113.890 kb on + strand at 113.964 kb on - strand, within DDA3937_RS00480 at 113.964 kb on - strand, within DDA3937_RS00480 at 114.045 kb on + strand, within DDA3937_RS00480 at 114.045 kb on + strand, within DDA3937_RS00480 at 114.046 kb on - strand, within DDA3937_RS00480 at 114.097 kb on + strand, within DDA3937_RS00480 at 114.097 kb on + strand, within DDA3937_RS00480 at 114.097 kb on + strand, within DDA3937_RS00480 at 114.097 kb on + strand, within DDA3937_RS00480 at 114.098 kb on - strand, within DDA3937_RS00480 at 114.098 kb on - strand, within DDA3937_RS00480 at 114.098 kb on - strand, within DDA3937_RS00480 at 114.100 kb on + strand, within DDA3937_RS00480 at 114.101 kb on - strand, within DDA3937_RS00480 at 114.101 kb on - strand, within DDA3937_RS00480 at 114.101 kb on - strand, within DDA3937_RS00480 at 114.196 kb on - strand, within DDA3937_RS00480 at 114.196 kb on - strand at 114.322 kb on + strand, within DDA3937_RS00480 at 114.322 kb on + strand, within DDA3937_RS00480 at 114.323 kb on - strand, within DDA3937_RS00480 at 114.323 kb on - strand, within DDA3937_RS00480 at 114.366 kb on + strand, within DDA3937_RS00480 at 114.503 kb on - strand, within DDA3937_RS00480 at 114.565 kb on + strand, within DDA3937_RS00480 at 114.565 kb on + strand, within DDA3937_RS00480 at 114.565 kb on + strand, within DDA3937_RS00480 at 114.565 kb on + strand, within DDA3937_RS00480 at 114.565 kb on + strand, within DDA3937_RS00480 at 114.565 kb on + strand, within DDA3937_RS00480 at 114.566 kb on - strand, within DDA3937_RS00480 at 114.566 kb on - strand, within DDA3937_RS00480 at 114.566 kb on - strand, within DDA3937_RS00480 at 114.628 kb on + strand, within DDA3937_RS00480 at 114.629 kb on - strand, within DDA3937_RS00480 at 114.629 kb on - strand, within DDA3937_RS00480 at 114.857 kb on + strand at 114.857 kb on + strand at 114.857 kb on + strand at 114.858 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 111,893 + +1.5 111,893 + -0.2 111,893 + +0.4 111,893 + -0.3 111,898 + -0.5 111,899 - +0.2 111,934 + -1.2 111,934 + +0.2 111,934 + -0.5 111,935 - -0.5 112,022 - -0.9 112,022 - +1.1 112,032 + -0.3 112,032 + -0.0 112,032 + +0.6 112,032 + +0.4 112,033 - +0.4 112,035 + -0.4 112,035 + +0.2 112,036 - -0.1 112,060 + DDA3937_RS00470 0.12 +0.2 112,060 + DDA3937_RS00470 0.12 +0.2 112,060 + DDA3937_RS00470 0.12 -0.8 112,060 + DDA3937_RS00470 0.12 -0.1 112,061 - DDA3937_RS00470 0.12 +0.5 112,061 - DDA3937_RS00470 0.12 +0.7 112,061 - DDA3937_RS00470 0.12 +1.1 112,147 - DDA3937_RS00470 0.22 +0.9 112,183 + DDA3937_RS00470 0.26 +0.1 112,183 + DDA3937_RS00470 0.26 +0.4 112,183 + DDA3937_RS00470 0.26 -0.5 112,183 + DDA3937_RS00470 0.26 -0.3 112,183 + DDA3937_RS00470 0.26 -0.4 112,183 + DDA3937_RS00470 0.26 +0.7 112,184 - DDA3937_RS00470 0.26 -0.0 112,184 - DDA3937_RS00470 0.26 +0.1 112,184 - DDA3937_RS00470 0.26 -0.2 112,184 - DDA3937_RS00470 0.26 +0.1 112,184 - DDA3937_RS00470 0.26 +0.2 112,234 + DDA3937_RS00470 0.32 -2.7 112,234 + DDA3937_RS00470 0.32 +0.3 112,235 - DDA3937_RS00470 0.32 -0.3 112,474 + DDA3937_RS00470 0.58 -1.4 112,474 + DDA3937_RS00470 0.58 -1.0 112,474 + DDA3937_RS00470 0.58 -1.3 112,475 - DDA3937_RS00470 0.58 +0.6 112,475 - DDA3937_RS00470 0.58 -0.9 112,475 - DDA3937_RS00470 0.58 -1.1 112,475 - DDA3937_RS00470 0.58 +0.3 112,475 - DDA3937_RS00470 0.58 -1.4 112,475 - +0.1 112,523 - DDA3937_RS00470 0.64 +0.2 112,523 - DDA3937_RS00470 0.64 -0.3 112,788 - +0.5 112,797 + +0.1 112,797 + -0.9 112,797 + -0.9 112,797 + -1.7 112,798 - -0.3 112,849 + +0.1 112,849 + -0.2 112,865 + -0.3 112,865 + -0.8 112,865 + +1.8 112,865 + -1.0 112,866 - +0.7 112,867 + -0.1 112,867 + +0.2 112,868 - -1.2 112,868 - +0.1 112,868 - -1.2 112,868 - +0.2 112,868 - -1.2 112,873 + +0.7 112,874 - -1.4 112,896 + -0.6 112,897 - -0.5 112,954 + +0.2 112,962 - -0.3 112,962 - +0.4 113,195 + DDA3937_RS00475 0.32 -0.3 113,196 - DDA3937_RS00475 0.32 -0.6 113,215 + DDA3937_RS00475 0.34 -0.2 113,561 + DDA3937_RS00475 0.69 +0.5 113,561 + DDA3937_RS00475 0.69 -1.1 113,561 + DDA3937_RS00475 0.69 +0.8 113,562 - DDA3937_RS00475 0.70 -1.2 113,562 - DDA3937_RS00475 0.70 -0.7 113,562 - DDA3937_RS00475 0.70 +0.7 113,624 + DDA3937_RS00475 0.76 +0.1 113,624 + DDA3937_RS00475 0.76 +0.6 113,624 + DDA3937_RS00475 0.76 +0.5 113,625 - DDA3937_RS00475 0.76 -0.9 113,625 - DDA3937_RS00475 0.76 +1.1 113,625 - DDA3937_RS00475 0.76 +0.1 113,625 - DDA3937_RS00475 0.76 -0.4 113,711 + DDA3937_RS00475 0.85 -0.5 113,712 - DDA3937_RS00475 0.85 +1.6 113,824 + -0.3 113,825 - +0.3 113,825 - -1.2 113,856 + +0.4 113,857 - -1.0 113,857 - -0.5 113,890 + -1.7 113,964 - DDA3937_RS00480 0.11 +0.7 113,964 - DDA3937_RS00480 0.11 -1.9 114,045 + DDA3937_RS00480 0.19 -0.8 114,045 + DDA3937_RS00480 0.19 -0.4 114,046 - DDA3937_RS00480 0.19 -0.1 114,097 + DDA3937_RS00480 0.24 -0.3 114,097 + DDA3937_RS00480 0.24 -0.1 114,097 + DDA3937_RS00480 0.24 -1.0 114,097 + DDA3937_RS00480 0.24 +0.1 114,098 - DDA3937_RS00480 0.24 -0.7 114,098 - DDA3937_RS00480 0.24 -0.3 114,098 - DDA3937_RS00480 0.24 -0.7 114,100 + DDA3937_RS00480 0.24 +0.4 114,101 - DDA3937_RS00480 0.24 -0.1 114,101 - DDA3937_RS00480 0.24 -0.4 114,101 - DDA3937_RS00480 0.24 -1.3 114,196 - DDA3937_RS00480 0.34 -0.3 114,196 - +2.7 114,322 + DDA3937_RS00480 0.46 -0.7 114,322 + DDA3937_RS00480 0.46 -0.5 114,323 - DDA3937_RS00480 0.46 +0.6 114,323 - DDA3937_RS00480 0.46 +0.3 114,366 + DDA3937_RS00480 0.50 +0.1 114,503 - DDA3937_RS00480 0.64 -0.4 114,565 + DDA3937_RS00480 0.70 -0.2 114,565 + DDA3937_RS00480 0.70 +0.5 114,565 + DDA3937_RS00480 0.70 +0.7 114,565 + DDA3937_RS00480 0.70 +1.1 114,565 + DDA3937_RS00480 0.70 -3.3 114,565 + DDA3937_RS00480 0.70 +0.6 114,566 - DDA3937_RS00480 0.70 +0.7 114,566 - DDA3937_RS00480 0.70 +0.5 114,566 - DDA3937_RS00480 0.70 -0.4 114,628 + DDA3937_RS00480 0.76 +0.6 114,629 - DDA3937_RS00480 0.77 -0.9 114,629 - DDA3937_RS00480 0.77 +0.7 114,857 + +0.5 114,857 + +0.2 114,857 + +1.7 114,858 - -0.5
Or see this region's nucleotide sequence