Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS00370

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
85,386	+		DDA3937_RS00365	0.19	+0.2
85,422	+		DDA3937_RS00365	0.24	+1.1
85,423	-		DDA3937_RS00365	0.24	-0.5
85,423	-		DDA3937_RS00365	0.24	+0.5
85,423	-		DDA3937_RS00365	0.24	-0.5
85,506	+		DDA3937_RS00365	0.34	+0.3
85,570	-		DDA3937_RS00365	0.42	+1.2
85,570	-				+0.1
85,570	-		DDA3937_RS00365	0.42	-0.4
85,602	+		DDA3937_RS00365	0.46	-0.5
85,602	+		DDA3937_RS00365	0.46	-1.1
85,603	-		DDA3937_RS00365	0.46	-1.1
85,605	-		DDA3937_RS00365	0.46	-0.3
85,605	-		DDA3937_RS00365	0.46	+0.8
85,762	-		DDA3937_RS00365	0.65	+0.1
85,788	+		DDA3937_RS00365	0.68	-0.4
85,789	-		DDA3937_RS00365	0.69	-0.5
85,943	+		DDA3937_RS00365	0.87	+0.2
85,982	+				-1.9
86,013	+				+0.1
86,013	+				-0.6
86,063	+				-0.1
86,064	-				-0.4
86,064	-				-1.0
86,064	-				+1.4
86,064	-				+0.1
86,064	-				-1.0
86,064	-				-0.4
86,064	-				-0.5
86,064	-				-0.0
86,064	-				-0.1
86,064	-				+0.5
86,064	-				-1.1
86,064	-				-0.4
86,064	-				-0.3
86,064	-				+0.1
86,064	-				+1.8
86,064	-				-0.3
86,064	-				-0.3
86,064	-				+0.1
86,064	-				-0.1
86,064	-				+0.0
86,064	-				+0.1
86,064	-				+0.4
86,065	+				-1.3
86,065	+				+0.7
86,065	+				-0.0
86,065	+				-0.6
86,065	+				-0.9
86,065	+				-0.1
86,065	+				+0.3
86,065	+				-0.3
86,065	+				-0.9
86,065	+				-1.2
86,065	+				+0.8
86,065	+				-0.5
86,065	+				+0.1
86,065	+				-0.2
86,065	+				+1.4
86,065	+				-0.2
86,065	+				+0.2
86,065	+				-0.5
86,065	+				-0.3
86,065	+				-0.2
86,065	+				+0.6
86,065	+				+0.9
86,065	+				+0.2
86,065	+				+2.1
86,065	+				+0.3
86,066	-				-0.1
86,066	-				-0.9
86,066	-				+2.1
86,066	-				-0.3
86,066	-				+0.8
86,066	-				-1.9
86,066	-				+0.5
86,066	-				+0.6
86,066	-				+0.7
86,066	-				+0.1
86,066	-				-0.3
86,066	-				+0.2
86,066	-				+0.6
86,066	-				-0.5
86,066	-				-1.3
86,066	-				-0.5
86,066	-				+0.2
86,066	-				+0.6
86,066	-				+0.3
86,066	-				-0.9
86,066	-				+0.3
86,066	-				-0.8
86,068	-				-0.7
86,068	-				-0.1
86,076	+				+0.0
86,076	+				-0.7
86,077	-				-0.0
86,106	+				+0.0
86,208	-				+0.1
86,324	+				-0.5
86,324	+				-0.6
86,324	+				+0.1
86,325	-				+0.0
86,325	-				-1.5
86,328	+				-0.1
86,333	+				+0.5
86,334	-				-0.3
86,335	+				+0.1
86,336	-				-1.1
86,532	+		DDA3937_RS00370	0.15	+0.2
86,713	-		DDA3937_RS00370	0.31	-0.5
86,777	-		DDA3937_RS00370	0.36	-1.1
86,902	+		DDA3937_RS00370	0.46	+0.7
86,902	+		DDA3937_RS00370	0.46	-0.1
86,902	+		DDA3937_RS00370	0.46	-0.5
86,902	+		DDA3937_RS00370	0.46	+0.2
86,903	-		DDA3937_RS00370	0.47	+0.2
86,937	+		DDA3937_RS00370	0.49	+0.1
86,938	-		DDA3937_RS00370	0.50	-0.6
86,973	+		DDA3937_RS00370	0.52	-0.9
86,974	-		DDA3937_RS00370	0.53	-1.1
87,007	+		DDA3937_RS00370	0.55	-0.2
87,007	+		DDA3937_RS00370	0.55	+1.1
87,088	-		DDA3937_RS00370	0.62	-0.6
87,187	-		DDA3937_RS00370	0.71	+2.1
87,223	+		DDA3937_RS00370	0.74	-0.9
87,223	+		DDA3937_RS00370	0.74	-0.5
87,224	-		DDA3937_RS00370	0.74	+0.7
87,231	+		DDA3937_RS00370	0.74	-0.7
87,232	-		DDA3937_RS00370	0.74	+0.3
87,232	-		DDA3937_RS00370	0.74	-0.6
87,232	-		DDA3937_RS00370	0.74	+0.2
87,283	-		DDA3937_RS00370	0.79	+0.1
87,283	-		DDA3937_RS00370	0.79	-1.7
87,283	-		DDA3937_RS00370	0.79	-2.1
87,294	+		DDA3937_RS00370	0.80	-0.6
87,294	+		DDA3937_RS00370	0.80	-0.5
87,294	+		DDA3937_RS00370	0.80	+0.1
87,295	-		DDA3937_RS00370	0.80	-0.3
87,295	-		DDA3937_RS00370	0.80	-3.3
87,295	-		DDA3937_RS00370	0.80	+0.3
87,295	-		DDA3937_RS00370	0.80	-2.7
87,295	-		DDA3937_RS00370	0.80	-0.6
87,303	+		DDA3937_RS00370	0.80	-1.3
87,335	+		DDA3937_RS00370	0.83	+0.7
87,400	+		DDA3937_RS00370	0.89	-1.2
87,400	+		DDA3937_RS00370	0.89	+1.9
87,400	+		DDA3937_RS00370	0.89	+0.5
87,513	+				+0.3
87,536	-				-0.5
87,549	-				+0.1
87,553	+				-1.3
87,553	+				+0.9
87,553	+				+3.4
87,553	+				-0.5
87,555	+				+0.2
87,555	+				+0.1
87,556	-				-0.3
87,568	+				+0.5
87,568	+				+2.1
87,578	-				+0.3
87,578	-				+0.7
87,661	-				+0.3
87,697	+				-1.6
87,697	+				+2.1
87,697	+				+1.1
87,698	-				-0.6
87,698	-				-1.1
87,736	-				-0.4
87,740	+				+0.1
87,740	+				+0.3
87,740	+				+1.1
87,741	-				+0.5
87,741	-				-0.3
87,759	+				-1.6
87,760	-				-0.4
87,760	-				-1.1
87,760	-				-0.6
87,760	-				-0.2
87,760	-				-0.6
87,761	+				-0.4
87,761	+				+1.1
87,761	+				+0.5
87,761	+				-0.3
87,762	-				+1.1
87,762	-				+0.1
87,794	-				+0.6
87,853	+				+0.3
87,853	+				+0.2
87,854	-				+0.1
87,854	-				-0.7
87,854	-				-0.6
87,854	-				+0.4
88,010	+		DDA3937_RS00375	0.31	-0.1
88,010	+		DDA3937_RS00375	0.31	+0.7
88,010	+		DDA3937_RS00375	0.31	-0.6
88,011	-		DDA3937_RS00375	0.31	+0.1
88,011	-		DDA3937_RS00375	0.31	+0.0
88,011	-		DDA3937_RS00375	0.31	-1.4
88,082	-		DDA3937_RS00375	0.41	+0.0
88,082	-		DDA3937_RS00375	0.41	-0.4
88,100	+		DDA3937_RS00375	0.44	-1.3
88,101	-		DDA3937_RS00375	0.44	-0.2
88,131	+		DDA3937_RS00375	0.48	+0.2
88,132	-		DDA3937_RS00375	0.49	+1.2
88,289	+		DDA3937_RS00375	0.71	+0.7
88,289	+		DDA3937_RS00375	0.71	-0.8
88,289	+		DDA3937_RS00375	0.71	-0.3
88,289	+		DDA3937_RS00375	0.71	-1.6
88,290	-		DDA3937_RS00375	0.71	-1.5
88,340	+		DDA3937_RS00375	0.78	-1.3
88,460	+				-0.1
88,460	+				+0.4
88,460	+				+2.3
88,460	+				-1.3
88,460	+				-1.1
88,461	-				-0.6
88,483	+				-0.1
88,484	-				+0.4
88,487	+				+0.5
88,487	+				-0.2
88,487	+				-0.2
88,488	-				+1.4
88,488	-				+0.3
88,488	-				+0.1
88,488	-				+1.5
88,488	-				-1.7
88,488	-				-0.4
88,488	-				-0.3
88,488	-				-0.1
88,488	-				-0.3
88,488	-				-0.5
88,517	-				+0.9