Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00235 and DDA3937_RS00240 are separated by 118 nucleotides DDA3937_RS00240 and DDA3937_RS00245 are separated by 359 nucleotides
DDA3937_RS00235: DDA3937_RS00235 - MFS transporter, at 55,731 to 56,900
_RS00235
DDA3937_RS00240: DDA3937_RS00240 - histidine-type phosphatase, at 57,019 to 58,296
_RS00240
DDA3937_RS00245: DDA3937_RS00245 - sugar ABC transporter permease, at 58,656 to 59,504
_RS00245
Position (kb) 57
58
59 Strain fitness (log2 ratio) -2
-1
0
1
2 at 56.062 kb on + strand, within DDA3937_RS00235 at 56.101 kb on + strand, within DDA3937_RS00235 at 56.101 kb on + strand, within DDA3937_RS00235 at 56.101 kb on + strand, within DDA3937_RS00235 at 56.101 kb on + strand, within DDA3937_RS00235 at 56.102 kb on - strand, within DDA3937_RS00235 at 56.291 kb on + strand, within DDA3937_RS00235 at 56.452 kb on - strand, within DDA3937_RS00235 at 56.452 kb on - strand, within DDA3937_RS00235 at 56.666 kb on - strand, within DDA3937_RS00235 at 56.666 kb on - strand, within DDA3937_RS00235 at 56.666 kb on - strand, within DDA3937_RS00235 at 56.666 kb on - strand, within DDA3937_RS00235 at 56.718 kb on + strand, within DDA3937_RS00235 at 56.718 kb on + strand, within DDA3937_RS00235 at 56.718 kb on + strand, within DDA3937_RS00235 at 56.719 kb on - strand, within DDA3937_RS00235 at 56.753 kb on + strand, within DDA3937_RS00235 at 56.753 kb on + strand, within DDA3937_RS00235 at 56.753 kb on + strand, within DDA3937_RS00235 at 56.754 kb on - strand, within DDA3937_RS00235 at 56.754 kb on - strand, within DDA3937_RS00235 at 56.898 kb on + strand at 56.898 kb on + strand at 56.935 kb on + strand at 56.935 kb on + strand at 56.935 kb on + strand at 56.944 kb on + strand at 56.945 kb on - strand at 57.016 kb on + strand at 57.017 kb on - strand at 57.020 kb on + strand at 57.020 kb on + strand at 57.020 kb on + strand at 57.021 kb on - strand at 57.218 kb on + strand, within DDA3937_RS00240 at 57.219 kb on - strand, within DDA3937_RS00240 at 57.219 kb on - strand, within DDA3937_RS00240 at 57.219 kb on - strand, within DDA3937_RS00240 at 57.219 kb on - strand, within DDA3937_RS00240 at 57.219 kb on - strand, within DDA3937_RS00240 at 57.288 kb on + strand, within DDA3937_RS00240 at 57.288 kb on + strand, within DDA3937_RS00240 at 57.371 kb on + strand, within DDA3937_RS00240 at 57.371 kb on + strand, within DDA3937_RS00240 at 57.372 kb on - strand, within DDA3937_RS00240 at 57.372 kb on - strand, within DDA3937_RS00240 at 57.372 kb on - strand, within DDA3937_RS00240 at 57.372 kb on - strand, within DDA3937_RS00240 at 57.420 kb on + strand, within DDA3937_RS00240 at 57.433 kb on + strand, within DDA3937_RS00240 at 57.469 kb on + strand, within DDA3937_RS00240 at 57.473 kb on + strand, within DDA3937_RS00240 at 57.473 kb on + strand, within DDA3937_RS00240 at 57.474 kb on - strand, within DDA3937_RS00240 at 57.474 kb on - strand, within DDA3937_RS00240 at 57.497 kb on + strand, within DDA3937_RS00240 at 57.590 kb on + strand, within DDA3937_RS00240 at 57.591 kb on - strand, within DDA3937_RS00240 at 57.913 kb on + strand, within DDA3937_RS00240 at 57.913 kb on + strand, within DDA3937_RS00240 at 57.976 kb on + strand, within DDA3937_RS00240 at 57.976 kb on + strand, within DDA3937_RS00240 at 57.976 kb on + strand, within DDA3937_RS00240 at 57.977 kb on - strand, within DDA3937_RS00240 at 57.977 kb on - strand, within DDA3937_RS00240 at 57.977 kb on - strand, within DDA3937_RS00240 at 57.977 kb on - strand, within DDA3937_RS00240 at 57.977 kb on - strand, within DDA3937_RS00240 at 57.977 kb on - strand, within DDA3937_RS00240 at 57.977 kb on - strand, within DDA3937_RS00240 at 57.977 kb on - strand, within DDA3937_RS00240 at 57.977 kb on - strand, within DDA3937_RS00240 at 57.977 kb on - strand, within DDA3937_RS00240 at 57.977 kb on - strand, within DDA3937_RS00240 at 58.028 kb on + strand, within DDA3937_RS00240 at 58.041 kb on - strand, within DDA3937_RS00240 at 58.052 kb on - strand, within DDA3937_RS00240 at 58.052 kb on - strand, within DDA3937_RS00240 at 58.052 kb on - strand, within DDA3937_RS00240 at 58.052 kb on - strand at 58.052 kb on - strand, within DDA3937_RS00240 at 58.184 kb on - strand at 58.184 kb on - strand at 58.184 kb on - strand at 58.291 kb on + strand at 58.291 kb on + strand at 58.292 kb on - strand at 58.292 kb on - strand at 58.292 kb on - strand at 58.296 kb on + strand at 58.296 kb on + strand at 58.296 kb on + strand at 58.296 kb on + strand at 58.296 kb on + strand at 58.296 kb on + strand at 58.296 kb on + strand at 58.296 kb on + strand at 58.296 kb on + strand at 58.296 kb on + strand at 58.296 kb on + strand at 58.296 kb on + strand at 58.296 kb on + strand at 58.296 kb on + strand at 58.296 kb on + strand at 58.297 kb on - strand at 58.297 kb on - strand at 58.297 kb on - strand at 58.297 kb on - strand at 58.297 kb on - strand at 58.297 kb on - strand at 58.297 kb on - strand at 58.297 kb on - strand at 58.297 kb on - strand at 58.297 kb on - strand at 58.297 kb on - strand at 58.297 kb on - strand at 58.311 kb on + strand at 58.311 kb on + strand at 58.312 kb on - strand at 58.312 kb on - strand at 58.312 kb on - strand at 58.312 kb on - strand at 58.362 kb on + strand at 58.372 kb on - strand at 58.375 kb on + strand at 58.375 kb on + strand at 58.375 kb on + strand at 58.375 kb on + strand at 58.375 kb on + strand at 58.376 kb on - strand at 58.403 kb on + strand at 58.407 kb on + strand at 58.407 kb on + strand at 58.408 kb on - strand at 58.444 kb on + strand at 58.444 kb on + strand at 58.445 kb on - strand at 58.445 kb on - strand at 58.459 kb on + strand at 58.554 kb on + strand at 58.554 kb on + strand at 58.584 kb on + strand at 58.622 kb on - strand at 58.625 kb on + strand at 58.625 kb on + strand at 58.625 kb on + strand at 58.626 kb on - strand at 58.655 kb on + strand at 58.656 kb on - strand at 58.671 kb on - strand at 58.671 kb on - strand at 58.700 kb on - strand at 58.731 kb on + strand at 58.731 kb on + strand at 58.731 kb on + strand at 58.731 kb on + strand at 58.731 kb on + strand at 58.731 kb on + strand at 58.732 kb on - strand at 58.732 kb on - strand at 58.733 kb on + strand at 58.733 kb on + strand at 58.734 kb on - strand at 58.757 kb on + strand, within DDA3937_RS00245 at 58.757 kb on + strand, within DDA3937_RS00245 at 58.757 kb on + strand, within DDA3937_RS00245 at 58.757 kb on + strand, within DDA3937_RS00245 at 58.757 kb on + strand, within DDA3937_RS00245 at 58.758 kb on - strand, within DDA3937_RS00245 at 58.758 kb on - strand, within DDA3937_RS00245 at 58.758 kb on - strand, within DDA3937_RS00245 at 58.770 kb on + strand, within DDA3937_RS00245 at 58.770 kb on + strand, within DDA3937_RS00245 at 58.771 kb on - strand, within DDA3937_RS00245 at 58.790 kb on + strand, within DDA3937_RS00245 at 58.791 kb on - strand, within DDA3937_RS00245 at 58.791 kb on - strand, within DDA3937_RS00245 at 58.795 kb on - strand, within DDA3937_RS00245 at 58.795 kb on - strand, within DDA3937_RS00245 at 58.938 kb on + strand, within DDA3937_RS00245 at 59.119 kb on + strand, within DDA3937_RS00245 at 59.119 kb on + strand, within DDA3937_RS00245 at 59.185 kb on + strand, within DDA3937_RS00245 at 59.185 kb on + strand, within DDA3937_RS00245 at 59.186 kb on - strand, within DDA3937_RS00245 at 59.186 kb on - strand, within DDA3937_RS00245 at 59.186 kb on - strand, within DDA3937_RS00245 at 59.186 kb on - strand, within DDA3937_RS00245 at 59.187 kb on + strand, within DDA3937_RS00245 at 59.187 kb on + strand, within DDA3937_RS00245 at 59.188 kb on - strand, within DDA3937_RS00245 at 59.188 kb on - strand, within DDA3937_RS00245
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 56,062 + DDA3937_RS00235 0.28 +0.1 56,101 + DDA3937_RS00235 0.32 -0.4 56,101 + DDA3937_RS00235 0.32 +0.5 56,101 + DDA3937_RS00235 0.32 +0.2 56,101 + DDA3937_RS00235 0.32 -0.7 56,102 - DDA3937_RS00235 0.32 -1.1 56,291 + DDA3937_RS00235 0.48 +0.6 56,452 - DDA3937_RS00235 0.62 -0.2 56,452 - DDA3937_RS00235 0.62 -0.0 56,666 - DDA3937_RS00235 0.80 -0.3 56,666 - DDA3937_RS00235 0.80 +0.5 56,666 - DDA3937_RS00235 0.80 -0.3 56,666 - DDA3937_RS00235 0.80 +0.1 56,718 + DDA3937_RS00235 0.84 -0.6 56,718 + DDA3937_RS00235 0.84 -0.7 56,718 + DDA3937_RS00235 0.84 -1.7 56,719 - DDA3937_RS00235 0.84 -2.3 56,753 + DDA3937_RS00235 0.87 -0.3 56,753 + DDA3937_RS00235 0.87 +0.5 56,753 + DDA3937_RS00235 0.87 -0.9 56,754 - DDA3937_RS00235 0.87 -0.4 56,754 - DDA3937_RS00235 0.87 +0.1 56,898 + -0.1 56,898 + -0.0 56,935 + -0.1 56,935 + -0.7 56,935 + -0.4 56,944 + -0.7 56,945 - +0.1 57,016 + -0.2 57,017 - -2.4 57,020 + +0.1 57,020 + -0.4 57,020 + -0.0 57,021 - +0.1 57,218 + DDA3937_RS00240 0.16 -0.1 57,219 - DDA3937_RS00240 0.16 +0.2 57,219 - DDA3937_RS00240 0.16 +0.8 57,219 - DDA3937_RS00240 0.16 +0.6 57,219 - DDA3937_RS00240 0.16 -0.1 57,219 - DDA3937_RS00240 0.16 +1.7 57,288 + DDA3937_RS00240 0.21 -0.1 57,288 + DDA3937_RS00240 0.21 -1.3 57,371 + DDA3937_RS00240 0.28 +0.5 57,371 + DDA3937_RS00240 0.28 -0.5 57,372 - DDA3937_RS00240 0.28 -1.7 57,372 - DDA3937_RS00240 0.28 -0.5 57,372 - DDA3937_RS00240 0.28 -0.5 57,372 - DDA3937_RS00240 0.28 -2.3 57,420 + DDA3937_RS00240 0.31 +0.5 57,433 + DDA3937_RS00240 0.32 -0.1 57,469 + DDA3937_RS00240 0.35 +1.1 57,473 + DDA3937_RS00240 0.36 -0.9 57,473 + DDA3937_RS00240 0.36 -0.3 57,474 - DDA3937_RS00240 0.36 -0.8 57,474 - DDA3937_RS00240 0.36 -0.2 57,497 + DDA3937_RS00240 0.37 -0.9 57,590 + DDA3937_RS00240 0.45 -0.4 57,591 - DDA3937_RS00240 0.45 -0.8 57,913 + DDA3937_RS00240 0.70 -1.0 57,913 + DDA3937_RS00240 0.70 -0.3 57,976 + DDA3937_RS00240 0.75 -0.8 57,976 + DDA3937_RS00240 0.75 +0.2 57,976 + DDA3937_RS00240 0.75 -0.1 57,977 - DDA3937_RS00240 0.75 +1.4 57,977 - DDA3937_RS00240 0.75 +1.7 57,977 - DDA3937_RS00240 0.75 -2.3 57,977 - DDA3937_RS00240 0.75 -0.7 57,977 - DDA3937_RS00240 0.75 -0.1 57,977 - DDA3937_RS00240 0.75 +0.5 57,977 - DDA3937_RS00240 0.75 -1.3 57,977 - DDA3937_RS00240 0.75 -1.0 57,977 - DDA3937_RS00240 0.75 -1.9 57,977 - DDA3937_RS00240 0.75 -0.7 57,977 - DDA3937_RS00240 0.75 +0.1 58,028 + DDA3937_RS00240 0.79 -0.6 58,041 - DDA3937_RS00240 0.80 -0.3 58,052 - DDA3937_RS00240 0.81 -0.8 58,052 - DDA3937_RS00240 0.81 -1.3 58,052 - DDA3937_RS00240 0.81 -1.9 58,052 - +1.8 58,052 - DDA3937_RS00240 0.81 -0.7 58,184 - +0.6 58,184 - -1.3 58,184 - -0.8 58,291 + -0.2 58,291 + +1.7 58,292 - -0.6 58,292 - +0.3 58,292 - +0.3 58,296 + +1.1 58,296 + +0.1 58,296 + -0.9 58,296 + -1.0 58,296 + +0.8 58,296 + -0.3 58,296 + +0.5 58,296 + -0.3 58,296 + +0.1 58,296 + +0.8 58,296 + -0.5 58,296 + +0.3 58,296 + -0.2 58,296 + +1.5 58,296 + -0.9 58,297 - +0.1 58,297 - -0.2 58,297 - +1.1 58,297 - +0.5 58,297 - -0.9 58,297 - -0.4 58,297 - -0.1 58,297 - +0.2 58,297 - -0.1 58,297 - +0.3 58,297 - -0.9 58,297 - -0.3 58,311 + -0.4 58,311 + -0.3 58,312 - +0.5 58,312 - -0.7 58,312 - +2.1 58,312 - -1.1 58,362 + +0.1 58,372 - -0.4 58,375 + -0.3 58,375 + -0.9 58,375 + +0.2 58,375 + +0.4 58,375 + -0.8 58,376 - +0.9 58,403 + -2.3 58,407 + +0.3 58,407 + +0.5 58,408 - -0.4 58,444 + +1.4 58,444 + +0.7 58,445 - +0.1 58,445 - -1.2 58,459 + -0.7 58,554 + -0.3 58,554 + +0.0 58,584 + -0.2 58,622 - +0.2 58,625 + +1.1 58,625 + +1.1 58,625 + -0.5 58,626 - -1.4 58,655 + +0.7 58,656 - +0.2 58,671 - +0.1 58,671 - +0.5 58,700 - -0.2 58,731 + -1.7 58,731 + -1.5 58,731 + -0.8 58,731 + -0.0 58,731 + -1.3 58,731 + +0.6 58,732 - +0.2 58,732 - -1.3 58,733 + +0.4 58,733 + +0.9 58,734 - +0.1 58,757 + DDA3937_RS00245 0.12 -2.3 58,757 + DDA3937_RS00245 0.12 -1.3 58,757 + DDA3937_RS00245 0.12 -0.7 58,757 + DDA3937_RS00245 0.12 -0.9 58,757 + DDA3937_RS00245 0.12 +0.7 58,758 - DDA3937_RS00245 0.12 -0.7 58,758 - DDA3937_RS00245 0.12 -0.4 58,758 - DDA3937_RS00245 0.12 -0.3 58,770 + DDA3937_RS00245 0.13 +0.1 58,770 + DDA3937_RS00245 0.13 +2.4 58,771 - DDA3937_RS00245 0.14 -2.3 58,790 + DDA3937_RS00245 0.16 -0.3 58,791 - DDA3937_RS00245 0.16 -1.6 58,791 - DDA3937_RS00245 0.16 -1.6 58,795 - DDA3937_RS00245 0.16 -0.7 58,795 - DDA3937_RS00245 0.16 -0.4 58,938 + DDA3937_RS00245 0.33 +0.4 59,119 + DDA3937_RS00245 0.55 +0.3 59,119 + DDA3937_RS00245 0.55 +0.9 59,185 + DDA3937_RS00245 0.62 +0.8 59,185 + DDA3937_RS00245 0.62 -0.0 59,186 - DDA3937_RS00245 0.62 +0.1 59,186 - DDA3937_RS00245 0.62 -0.4 59,186 - DDA3937_RS00245 0.62 +0.2 59,186 - DDA3937_RS00245 0.62 -0.2 59,187 + DDA3937_RS00245 0.63 -0.2 59,187 + DDA3937_RS00245 0.63 -0.3 59,188 - DDA3937_RS00245 0.63 -0.2 59,188 - DDA3937_RS00245 0.63 +0.3
Or see this region's nucleotide sequence