Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00135 and DDA3937_RS00140 are separated by 377 nucleotides DDA3937_RS00140 and DDA3937_RS00145 are separated by 222 nucleotides DDA3937_RS00145 and DDA3937_RS00150 are separated by 7 nucleotides
DDA3937_RS00135: DDA3937_RS00135 - glutamate--ammonia ligase, at 31,065 to 32,474
_RS00135
DDA3937_RS00140: DDA3937_RS00140 - ribosome-dependent GTPase TypA, at 32,852 to 34,675
_RS00140
DDA3937_RS00145: DDA3937_RS00145 - glucose-1-phosphatase, at 34,898 to 35,509
_RS00145
DDA3937_RS00150: DDA3937_RS00150 - D-tyrosyl-tRNA(Tyr) deacylase, at 35,517 to 35,954
_RS00150
Position (kb) 32
33
34
35 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 31.982 kb on - strand, within DDA3937_RS00135 at 32.400 kb on - strand at 32.475 kb on - strand at 32.501 kb on - strand at 32.501 kb on - strand at 32.501 kb on - strand at 32.531 kb on - strand at 32.531 kb on - strand at 32.548 kb on - strand at 32.548 kb on - strand at 32.548 kb on - strand at 32.548 kb on - strand at 32.548 kb on - strand at 32.558 kb on + strand at 32.559 kb on - strand at 32.563 kb on - strand at 32.563 kb on - strand at 32.581 kb on - strand at 32.581 kb on - strand at 32.641 kb on + strand at 32.642 kb on - strand at 32.642 kb on - strand at 32.720 kb on + strand at 32.720 kb on + strand at 32.721 kb on - strand at 32.804 kb on - strand at 32.804 kb on - strand at 32.806 kb on + strand at 32.806 kb on + strand at 32.806 kb on + strand at 32.807 kb on - strand at 32.807 kb on - strand at 32.807 kb on - strand at 32.807 kb on - strand at 32.807 kb on - strand at 32.807 kb on - strand at 32.807 kb on - strand at 32.812 kb on + strand at 32.812 kb on + strand at 32.812 kb on + strand at 32.813 kb on - strand at 32.813 kb on - strand at 32.813 kb on - strand at 32.813 kb on - strand at 32.813 kb on - strand at 32.813 kb on - strand at 32.813 kb on - strand at 32.817 kb on + strand at 32.825 kb on + strand at 32.826 kb on - strand at 32.831 kb on + strand at 32.881 kb on + strand at 32.882 kb on - strand at 32.882 kb on - strand at 33.013 kb on + strand at 33.065 kb on - strand, within DDA3937_RS00140 at 33.135 kb on + strand, within DDA3937_RS00140 at 33.135 kb on + strand, within DDA3937_RS00140 at 33.136 kb on - strand at 33.206 kb on + strand, within DDA3937_RS00140 at 33.342 kb on - strand, within DDA3937_RS00140 at 33.492 kb on - strand, within DDA3937_RS00140 at 33.492 kb on - strand, within DDA3937_RS00140 at 33.492 kb on - strand, within DDA3937_RS00140 at 33.500 kb on + strand, within DDA3937_RS00140 at 33.500 kb on + strand, within DDA3937_RS00140 at 33.500 kb on + strand, within DDA3937_RS00140 at 33.500 kb on + strand, within DDA3937_RS00140 at 33.500 kb on + strand, within DDA3937_RS00140 at 33.501 kb on - strand, within DDA3937_RS00140 at 33.501 kb on - strand, within DDA3937_RS00140 at 33.501 kb on - strand, within DDA3937_RS00140 at 33.501 kb on - strand, within DDA3937_RS00140 at 33.501 kb on - strand, within DDA3937_RS00140 at 33.588 kb on + strand, within DDA3937_RS00140 at 33.588 kb on + strand, within DDA3937_RS00140 at 33.589 kb on - strand at 33.589 kb on - strand, within DDA3937_RS00140 at 33.589 kb on - strand, within DDA3937_RS00140 at 33.612 kb on + strand, within DDA3937_RS00140 at 33.713 kb on - strand, within DDA3937_RS00140 at 33.757 kb on - strand, within DDA3937_RS00140 at 33.779 kb on + strand, within DDA3937_RS00140 at 33.779 kb on + strand, within DDA3937_RS00140 at 33.780 kb on - strand, within DDA3937_RS00140 at 33.780 kb on - strand, within DDA3937_RS00140 at 33.824 kb on + strand, within DDA3937_RS00140 at 33.825 kb on - strand, within DDA3937_RS00140 at 33.825 kb on - strand, within DDA3937_RS00140 at 34.161 kb on + strand, within DDA3937_RS00140 at 34.161 kb on + strand, within DDA3937_RS00140 at 34.162 kb on - strand, within DDA3937_RS00140 at 34.172 kb on + strand, within DDA3937_RS00140 at 34.172 kb on + strand, within DDA3937_RS00140 at 34.173 kb on - strand, within DDA3937_RS00140 at 34.265 kb on + strand, within DDA3937_RS00140 at 34.347 kb on - strand, within DDA3937_RS00140 at 34.347 kb on - strand, within DDA3937_RS00140 at 34.347 kb on - strand, within DDA3937_RS00140 at 34.406 kb on + strand, within DDA3937_RS00140 at 34.406 kb on + strand, within DDA3937_RS00140 at 34.407 kb on - strand, within DDA3937_RS00140 at 34.407 kb on - strand at 34.426 kb on + strand, within DDA3937_RS00140 at 34.484 kb on - strand, within DDA3937_RS00140 at 34.484 kb on - strand, within DDA3937_RS00140 at 34.518 kb on + strand at 34.615 kb on + strand at 34.673 kb on + strand at 34.673 kb on + strand at 34.674 kb on - strand at 34.681 kb on + strand at 34.693 kb on + strand at 34.693 kb on + strand at 34.693 kb on + strand at 34.693 kb on + strand at 34.693 kb on + strand at 34.693 kb on + strand at 34.693 kb on + strand at 34.693 kb on + strand at 34.694 kb on - strand at 34.694 kb on - strand at 34.694 kb on - strand at 34.694 kb on - strand at 34.694 kb on - strand at 34.694 kb on - strand at 34.694 kb on - strand at 34.694 kb on - strand at 34.694 kb on - strand at 34.694 kb on - strand at 34.694 kb on - strand at 34.694 kb on - strand at 34.694 kb on - strand at 34.694 kb on - strand at 34.694 kb on - strand at 34.707 kb on + strand at 34.708 kb on - strand at 34.712 kb on + strand at 34.779 kb on - strand at 34.815 kb on + strand at 34.816 kb on - strand at 34.816 kb on - strand at 34.816 kb on - strand at 34.816 kb on - strand at 34.818 kb on + strand at 34.818 kb on + strand at 34.818 kb on + strand at 34.818 kb on + strand at 34.819 kb on - strand at 34.819 kb on - strand at 34.862 kb on + strand at 34.904 kb on + strand at 34.904 kb on + strand at 34.904 kb on + strand at 34.904 kb on + strand at 34.904 kb on + strand at 34.904 kb on + strand at 34.905 kb on - strand at 34.905 kb on - strand at 34.906 kb on + strand at 34.906 kb on + strand at 34.906 kb on + strand at 34.907 kb on - strand at 34.907 kb on - strand at 34.907 kb on - strand at 34.917 kb on + strand at 34.917 kb on + strand at 34.918 kb on - strand at 34.921 kb on + strand at 34.921 kb on + strand at 34.922 kb on - strand at 34.922 kb on - strand at 34.934 kb on + strand at 35.098 kb on + strand, within DDA3937_RS00145 at 35.098 kb on + strand, within DDA3937_RS00145 at 35.099 kb on - strand, within DDA3937_RS00145 at 35.099 kb on - strand, within DDA3937_RS00145 at 35.145 kb on + strand, within DDA3937_RS00145 at 35.146 kb on - strand, within DDA3937_RS00145 at 35.146 kb on - strand, within DDA3937_RS00145 at 35.151 kb on + strand, within DDA3937_RS00145 at 35.152 kb on - strand, within DDA3937_RS00145 at 35.152 kb on - strand, within DDA3937_RS00145 at 35.152 kb on - strand, within DDA3937_RS00145 at 35.152 kb on - strand, within DDA3937_RS00145 at 35.152 kb on - strand, within DDA3937_RS00145 at 35.171 kb on - strand, within DDA3937_RS00145 at 35.208 kb on + strand, within DDA3937_RS00145 at 35.209 kb on - strand, within DDA3937_RS00145 at 35.209 kb on - strand, within DDA3937_RS00145 at 35.211 kb on + strand, within DDA3937_RS00145 at 35.211 kb on + strand, within DDA3937_RS00145 at 35.211 kb on + strand, within DDA3937_RS00145 at 35.211 kb on + strand, within DDA3937_RS00145 at 35.212 kb on - strand, within DDA3937_RS00145 at 35.212 kb on - strand, within DDA3937_RS00145 at 35.212 kb on - strand, within DDA3937_RS00145 at 35.212 kb on - strand, within DDA3937_RS00145 at 35.212 kb on - strand, within DDA3937_RS00145 at 35.212 kb on - strand, within DDA3937_RS00145 at 35.221 kb on + strand, within DDA3937_RS00145 at 35.221 kb on + strand, within DDA3937_RS00145 at 35.291 kb on + strand, within DDA3937_RS00145 at 35.336 kb on + strand, within DDA3937_RS00145 at 35.337 kb on - strand, within DDA3937_RS00145 at 35.337 kb on - strand, within DDA3937_RS00145 at 35.440 kb on + strand, within DDA3937_RS00145 at 35.440 kb on + strand, within DDA3937_RS00145 at 35.440 kb on + strand, within DDA3937_RS00145 at 35.441 kb on - strand, within DDA3937_RS00145 at 35.495 kb on - strand at 35.495 kb on - strand at 35.507 kb on + strand at 35.508 kb on - strand at 35.516 kb on + strand at 35.516 kb on + strand at 35.517 kb on - strand at 35.527 kb on + strand at 35.561 kb on - strand, within DDA3937_RS00150 at 35.572 kb on + strand, within DDA3937_RS00150 at 35.602 kb on + strand, within DDA3937_RS00150 at 35.602 kb on + strand, within DDA3937_RS00150 at 35.615 kb on - strand, within DDA3937_RS00150
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 31,982 - DDA3937_RS00135 0.65 -2.1 32,400 - -0.5 32,475 - +0.3 32,501 - +1.1 32,501 - +0.5 32,501 - +0.8 32,531 - -0.0 32,531 - +0.7 32,548 - +1.1 32,548 - +0.1 32,548 - -0.2 32,548 - -1.0 32,548 - -0.8 32,558 + -0.9 32,559 - -0.7 32,563 - +0.8 32,563 - -1.5 32,581 - +0.5 32,581 - -0.2 32,641 + +0.2 32,642 - +1.1 32,642 - -0.6 32,720 + +0.1 32,720 + +1.1 32,721 - +0.0 32,804 - -1.3 32,804 - -0.1 32,806 + +1.1 32,806 + +1.6 32,806 + +0.2 32,807 - +0.1 32,807 - -0.4 32,807 - +0.4 32,807 - -0.7 32,807 - -0.6 32,807 - -0.6 32,807 - +0.2 32,812 + +0.4 32,812 + -0.5 32,812 + -0.1 32,813 - -0.5 32,813 - -0.4 32,813 - -0.6 32,813 - +0.1 32,813 - -0.4 32,813 - +0.1 32,813 - +2.4 32,817 + -0.3 32,825 + -0.4 32,826 - +0.2 32,831 + -0.0 32,881 + -1.7 32,882 - -0.5 32,882 - -1.8 33,013 + +0.5 33,065 - DDA3937_RS00140 0.12 -1.9 33,135 + DDA3937_RS00140 0.16 -0.9 33,135 + DDA3937_RS00140 0.16 -2.9 33,136 - -0.9 33,206 + DDA3937_RS00140 0.19 +0.7 33,342 - DDA3937_RS00140 0.27 -0.9 33,492 - DDA3937_RS00140 0.35 -0.9 33,492 - DDA3937_RS00140 0.35 -2.1 33,492 - DDA3937_RS00140 0.35 -2.1 33,500 + DDA3937_RS00140 0.36 +0.3 33,500 + DDA3937_RS00140 0.36 -0.7 33,500 + DDA3937_RS00140 0.36 -1.5 33,500 + DDA3937_RS00140 0.36 -0.8 33,500 + DDA3937_RS00140 0.36 -1.7 33,501 - DDA3937_RS00140 0.36 +0.7 33,501 - DDA3937_RS00140 0.36 -0.5 33,501 - DDA3937_RS00140 0.36 +0.5 33,501 - DDA3937_RS00140 0.36 -0.5 33,501 - DDA3937_RS00140 0.36 -0.5 33,588 + DDA3937_RS00140 0.40 -1.5 33,588 + DDA3937_RS00140 0.40 -1.3 33,589 - -0.5 33,589 - DDA3937_RS00140 0.40 -1.9 33,589 - DDA3937_RS00140 0.40 +0.5 33,612 + DDA3937_RS00140 0.42 -1.7 33,713 - DDA3937_RS00140 0.47 -1.7 33,757 - DDA3937_RS00140 0.50 -1.3 33,779 + DDA3937_RS00140 0.51 -0.2 33,779 + DDA3937_RS00140 0.51 -1.7 33,780 - DDA3937_RS00140 0.51 +0.1 33,780 - DDA3937_RS00140 0.51 -1.3 33,824 + DDA3937_RS00140 0.53 -0.9 33,825 - DDA3937_RS00140 0.53 -1.3 33,825 - DDA3937_RS00140 0.53 -3.0 34,161 + DDA3937_RS00140 0.72 -1.4 34,161 + DDA3937_RS00140 0.72 -0.9 34,162 - DDA3937_RS00140 0.72 -1.3 34,172 + DDA3937_RS00140 0.72 -1.9 34,172 + DDA3937_RS00140 0.72 -0.3 34,173 - DDA3937_RS00140 0.72 -0.9 34,265 + DDA3937_RS00140 0.77 -1.6 34,347 - DDA3937_RS00140 0.82 +0.4 34,347 - DDA3937_RS00140 0.82 -0.4 34,347 - DDA3937_RS00140 0.82 +0.7 34,406 + DDA3937_RS00140 0.85 -2.4 34,406 + DDA3937_RS00140 0.85 -1.5 34,407 - DDA3937_RS00140 0.85 -1.2 34,407 - +1.7 34,426 + DDA3937_RS00140 0.86 +0.3 34,484 - DDA3937_RS00140 0.89 -2.7 34,484 - DDA3937_RS00140 0.89 -1.9 34,518 + -0.3 34,615 + -0.5 34,673 + +0.2 34,673 + -0.4 34,674 - +0.3 34,681 + -0.6 34,693 + -1.3 34,693 + -0.8 34,693 + -0.3 34,693 + +0.2 34,693 + -0.1 34,693 + +0.5 34,693 + +0.8 34,693 + +0.3 34,694 - +0.1 34,694 - -1.4 34,694 - +0.3 34,694 - -0.9 34,694 - -1.0 34,694 - -0.5 34,694 - -1.5 34,694 - -0.7 34,694 - -0.7 34,694 - -1.8 34,694 - -0.2 34,694 - -1.5 34,694 - -1.3 34,694 - -0.1 34,694 - -0.0 34,707 + +0.7 34,708 - -2.3 34,712 + -0.3 34,779 - +0.3 34,815 + +2.1 34,816 - +0.6 34,816 - +0.3 34,816 - -0.7 34,816 - +1.5 34,818 + -0.0 34,818 + +1.4 34,818 + +1.3 34,818 + +0.2 34,819 - -0.1 34,819 - -1.0 34,862 + -0.9 34,904 + -0.1 34,904 + +3.2 34,904 + +1.1 34,904 + +0.2 34,904 + +0.6 34,904 + +1.7 34,905 - -0.5 34,905 - -0.5 34,906 + -1.5 34,906 + +0.3 34,906 + +0.4 34,907 - +0.3 34,907 - +0.2 34,907 - -0.6 34,917 + -0.2 34,917 + +0.8 34,918 - +0.8 34,921 + -0.5 34,921 + -0.3 34,922 - -0.4 34,922 - +0.1 34,934 + +0.3 35,098 + DDA3937_RS00145 0.33 +0.9 35,098 + DDA3937_RS00145 0.33 +0.9 35,099 - DDA3937_RS00145 0.33 -0.4 35,099 - DDA3937_RS00145 0.33 +0.8 35,145 + DDA3937_RS00145 0.40 +0.3 35,146 - DDA3937_RS00145 0.41 +0.7 35,146 - DDA3937_RS00145 0.41 +0.4 35,151 + DDA3937_RS00145 0.41 -0.0 35,152 - DDA3937_RS00145 0.42 -0.1 35,152 - DDA3937_RS00145 0.42 +0.2 35,152 - DDA3937_RS00145 0.42 -0.5 35,152 - DDA3937_RS00145 0.42 -0.9 35,152 - DDA3937_RS00145 0.42 -0.4 35,171 - DDA3937_RS00145 0.45 -0.3 35,208 + DDA3937_RS00145 0.51 +0.6 35,209 - DDA3937_RS00145 0.51 -1.3 35,209 - DDA3937_RS00145 0.51 -1.3 35,211 + DDA3937_RS00145 0.51 -0.2 35,211 + DDA3937_RS00145 0.51 -1.3 35,211 + DDA3937_RS00145 0.51 +0.1 35,211 + DDA3937_RS00145 0.51 +0.5 35,212 - DDA3937_RS00145 0.51 +0.3 35,212 - DDA3937_RS00145 0.51 -0.3 35,212 - DDA3937_RS00145 0.51 -0.8 35,212 - DDA3937_RS00145 0.51 -0.3 35,212 - DDA3937_RS00145 0.51 -0.6 35,212 - DDA3937_RS00145 0.51 +0.1 35,221 + DDA3937_RS00145 0.53 -0.2 35,221 + DDA3937_RS00145 0.53 +0.1 35,291 + DDA3937_RS00145 0.64 -0.9 35,336 + DDA3937_RS00145 0.72 -0.2 35,337 - DDA3937_RS00145 0.72 -1.3 35,337 - DDA3937_RS00145 0.72 -1.1 35,440 + DDA3937_RS00145 0.89 -0.7 35,440 + DDA3937_RS00145 0.89 +0.4 35,440 + DDA3937_RS00145 0.89 -0.4 35,441 - DDA3937_RS00145 0.89 +0.7 35,495 - +0.9 35,495 - +0.1 35,507 + -0.2 35,508 - -3.6 35,516 + -0.1 35,516 + +0.4 35,517 - -1.3 35,527 + +0.4 35,561 - DDA3937_RS00150 0.10 -1.3 35,572 + DDA3937_RS00150 0.13 +0.0 35,602 + DDA3937_RS00150 0.19 -0.7 35,602 + DDA3937_RS00150 0.19 -0.3 35,615 - DDA3937_RS00150 0.22 +0.3
Or see this region's nucleotide sequence