Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS00065

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS00060 and DDA3937_RS00065 are separated by 86 nucleotidesDDA3937_RS00065 and DDA3937_RS00070 are separated by 194 nucleotides DDA3937_RS00060: DDA3937_RS00060 - 16S ribosomal RNA, at 12,976 to 14,517 _RS00060 DDA3937_RS00065: DDA3937_RS00065 - tRNA-Glu, at 14,604 to 14,679 _RS00065 DDA3937_RS00070: DDA3937_RS00070 - 23S ribosomal RNA, at 14,874 to 17,781 _RS00070 Position (kb) 14 15Strain fitness (log2 ratio) -1 0 1at 15.463 kb on + strand, within DDA3937_RS00070at 15.541 kb on + strand, within DDA3937_RS00070

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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15,463 + DDA3937_RS00070 0.20 +0.1
15,541 + DDA3937_RS00070 0.23 -0.3

Or see this region's nucleotide sequence