Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS23485

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS06825 and DDA3937_RS23485 are separated by 395 nucleotidesDDA3937_RS23485 and DDA3937_RS06830 are separated by 345 nucleotides DDA3937_RS06825: DDA3937_RS06825 - YjbH domain-containing protein, at 1,526,747 to 1,528,888 _RS06825 DDA3937_RS23485: DDA3937_RS23485 - hypothetical protein, at 1,529,284 to 1,529,448 _RS23485 DDA3937_RS06830: DDA3937_RS06830 - diguanylate cyclase, at 1,529,794 to 1,530,858 _RS06830 Position (kb) 1529 1530Strain fitness (log2 ratio) -3 -2 -1 0 1at 1528.294 kb on + strand, within DDA3937_RS06825at 1528.295 kb on - strand, within DDA3937_RS06825at 1528.304 kb on + strand, within DDA3937_RS06825at 1528.304 kb on + strand, within DDA3937_RS06825at 1528.304 kb on + strand, within DDA3937_RS06825at 1528.304 kb on + strand, within DDA3937_RS06825at 1528.304 kb on + strand, within DDA3937_RS06825at 1528.304 kb on + strand, within DDA3937_RS06825at 1528.304 kb on + strand, within DDA3937_RS06825at 1528.305 kb on - strand, within DDA3937_RS06825at 1528.305 kb on - strand, within DDA3937_RS06825at 1528.305 kb on - strand, within DDA3937_RS06825at 1528.305 kb on - strandat 1528.376 kb on + strand, within DDA3937_RS06825at 1528.376 kb on + strand, within DDA3937_RS06825at 1528.377 kb on - strand, within DDA3937_RS06825at 1528.378 kb on + strand, within DDA3937_RS06825at 1528.397 kb on + strand, within DDA3937_RS06825at 1528.412 kb on + strand, within DDA3937_RS06825at 1528.412 kb on + strand, within DDA3937_RS06825at 1528.412 kb on + strand, within DDA3937_RS06825at 1528.412 kb on + strand, within DDA3937_RS06825at 1528.413 kb on - strand, within DDA3937_RS06825at 1528.480 kb on + strand, within DDA3937_RS06825at 1528.480 kb on + strand, within DDA3937_RS06825at 1528.480 kb on + strand, within DDA3937_RS06825at 1528.480 kb on + strand, within DDA3937_RS06825at 1528.481 kb on - strandat 1528.481 kb on - strand, within DDA3937_RS06825at 1528.481 kb on - strand, within DDA3937_RS06825at 1528.484 kb on + strand, within DDA3937_RS06825at 1528.484 kb on + strand, within DDA3937_RS06825at 1528.484 kb on + strand, within DDA3937_RS06825at 1528.485 kb on - strand, within DDA3937_RS06825at 1528.485 kb on - strand, within DDA3937_RS06825at 1528.485 kb on - strand, within DDA3937_RS06825at 1528.485 kb on - strand, within DDA3937_RS06825at 1528.485 kb on - strand, within DDA3937_RS06825at 1528.530 kb on - strand, within DDA3937_RS06825at 1528.559 kb on + strand, within DDA3937_RS06825at 1528.559 kb on + strand, within DDA3937_RS06825at 1528.560 kb on - strand, within DDA3937_RS06825at 1528.560 kb on - strand, within DDA3937_RS06825at 1528.748 kb on + strandat 1528.748 kb on + strandat 1528.748 kb on + strandat 1528.749 kb on - strandat 1528.749 kb on - strandat 1528.749 kb on - strandat 1528.865 kb on + strandat 1528.865 kb on + strandat 1528.865 kb on + strandat 1528.865 kb on + strandat 1528.865 kb on + strandat 1528.865 kb on + strandat 1528.866 kb on - strandat 1528.866 kb on - strandat 1528.866 kb on - strandat 1528.866 kb on - strandat 1528.866 kb on - strandat 1528.866 kb on - strandat 1528.866 kb on - strandat 1528.867 kb on + strandat 1528.868 kb on - strandat 1528.887 kb on - strandat 1528.902 kb on + strandat 1529.094 kb on + strandat 1529.149 kb on - strandat 1529.190 kb on + strandat 1529.191 kb on - strandat 1529.254 kb on - strandat 1529.333 kb on + strand, within DDA3937_RS23485at 1529.333 kb on + strand, within DDA3937_RS23485at 1529.497 kb on - strandat 1529.574 kb on + strandat 1529.575 kb on - strandat 1529.575 kb on - strandat 1529.578 kb on + strandat 1529.585 kb on - strandat 1529.612 kb on + strandat 1529.613 kb on - strandat 1529.613 kb on - strandat 1529.627 kb on + strandat 1529.627 kb on + strandat 1529.627 kb on + strandat 1529.627 kb on + strandat 1529.627 kb on + strandat 1529.627 kb on + strandat 1529.627 kb on + strandat 1529.628 kb on - strandat 1529.628 kb on - strandat 1529.628 kb on - strandat 1529.628 kb on - strandat 1529.628 kb on - strandat 1529.628 kb on - strandat 1529.648 kb on - strandat 1529.653 kb on - strandat 1529.705 kb on + strandat 1529.705 kb on + strandat 1529.705 kb on + strandat 1529.705 kb on + strandat 1529.706 kb on - strandat 1529.740 kb on + strandat 1529.776 kb on + strandat 1529.777 kb on - strandat 1529.777 kb on - strandat 1529.778 kb on + strandat 1529.778 kb on + strandat 1529.778 kb on + strandat 1529.778 kb on + strandat 1529.778 kb on + strandat 1529.778 kb on + strandat 1529.778 kb on + strandat 1529.778 kb on + strandat 1529.779 kb on - strandat 1529.779 kb on - strandat 1529.779 kb on - strandat 1529.779 kb on - strandat 1529.779 kb on - strandat 1529.779 kb on - strandat 1529.779 kb on - strandat 1529.797 kb on + strandat 1529.797 kb on + strandat 1529.797 kb on + strandat 1529.797 kb on + strandat 1529.798 kb on - strandat 1529.798 kb on - strandat 1529.798 kb on - strandat 1529.798 kb on - strandat 1529.869 kb on + strandat 1529.869 kb on + strandat 1529.869 kb on + strandat 1529.870 kb on - strandat 1529.883 kb on + strandat 1529.927 kb on - strand, within DDA3937_RS06830at 1530.147 kb on + strand, within DDA3937_RS06830at 1530.147 kb on + strand, within DDA3937_RS06830at 1530.216 kb on + strand, within DDA3937_RS06830at 1530.217 kb on - strand, within DDA3937_RS06830at 1530.217 kb on - strand, within DDA3937_RS06830at 1530.268 kb on + strand, within DDA3937_RS06830at 1530.268 kb on + strand, within DDA3937_RS06830at 1530.268 kb on + strand, within DDA3937_RS06830at 1530.268 kb on + strand, within DDA3937_RS06830at 1530.268 kb on + strand, within DDA3937_RS06830at 1530.268 kb on + strand, within DDA3937_RS06830at 1530.268 kb on + strand, within DDA3937_RS06830at 1530.269 kb on - strand, within DDA3937_RS06830at 1530.269 kb on - strand, within DDA3937_RS06830at 1530.269 kb on - strand, within DDA3937_RS06830at 1530.287 kb on + strand, within DDA3937_RS06830at 1530.287 kb on + strand, within DDA3937_RS06830at 1530.287 kb on + strand, within DDA3937_RS06830at 1530.287 kb on + strand, within DDA3937_RS06830at 1530.287 kb on + strand, within DDA3937_RS06830at 1530.288 kb on - strand, within DDA3937_RS06830at 1530.288 kb on - strand, within DDA3937_RS06830at 1530.288 kb on - strand, within DDA3937_RS06830at 1530.288 kb on - strand, within DDA3937_RS06830at 1530.291 kb on + strand, within DDA3937_RS06830at 1530.291 kb on + strand, within DDA3937_RS06830at 1530.291 kb on + strand, within DDA3937_RS06830at 1530.291 kb on + strand, within DDA3937_RS06830at 1530.291 kb on + strand, within DDA3937_RS06830at 1530.291 kb on + strand, within DDA3937_RS06830at 1530.291 kb on + strand, within DDA3937_RS06830at 1530.291 kb on + strand, within DDA3937_RS06830at 1530.291 kb on + strand, within DDA3937_RS06830at 1530.291 kb on + strand, within DDA3937_RS06830at 1530.291 kb on + strand, within DDA3937_RS06830at 1530.291 kb on + strand, within DDA3937_RS06830at 1530.291 kb on + strand, within DDA3937_RS06830at 1530.291 kb on + strand, within DDA3937_RS06830at 1530.292 kb on - strand, within DDA3937_RS06830at 1530.292 kb on - strand, within DDA3937_RS06830at 1530.292 kb on - strand, within DDA3937_RS06830at 1530.292 kb on - strand, within DDA3937_RS06830at 1530.292 kb on - strand, within DDA3937_RS06830at 1530.292 kb on - strand, within DDA3937_RS06830at 1530.292 kb on - strand, within DDA3937_RS06830at 1530.292 kb on - strand, within DDA3937_RS06830at 1530.296 kb on - strand, within DDA3937_RS06830at 1530.296 kb on - strand, within DDA3937_RS06830at 1530.296 kb on - strand, within DDA3937_RS06830at 1530.323 kb on - strand, within DDA3937_RS06830at 1530.323 kb on - strand, within DDA3937_RS06830at 1530.387 kb on + strand, within DDA3937_RS06830at 1530.387 kb on + strand, within DDA3937_RS06830at 1530.388 kb on - strandat 1530.400 kb on + strand, within DDA3937_RS06830at 1530.400 kb on + strand, within DDA3937_RS06830at 1530.400 kb on + strand, within DDA3937_RS06830at 1530.400 kb on + strand, within DDA3937_RS06830at 1530.400 kb on + strand, within DDA3937_RS06830at 1530.412 kb on + strand, within DDA3937_RS06830

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,528,294 + DDA3937_RS06825 0.72 -1.8
1,528,295 - DDA3937_RS06825 0.72 -0.3
1,528,304 + DDA3937_RS06825 0.73 -0.3
1,528,304 + DDA3937_RS06825 0.73 +0.4
1,528,304 + DDA3937_RS06825 0.73 -0.1
1,528,304 + DDA3937_RS06825 0.73 +0.6
1,528,304 + DDA3937_RS06825 0.73 +0.2
1,528,304 + DDA3937_RS06825 0.73 -1.0
1,528,304 + DDA3937_RS06825 0.73 -0.6
1,528,305 - DDA3937_RS06825 0.73 +0.2
1,528,305 - DDA3937_RS06825 0.73 -0.1
1,528,305 - DDA3937_RS06825 0.73 +0.8
1,528,305 - -1.4
1,528,376 + DDA3937_RS06825 0.76 -1.0
1,528,376 + DDA3937_RS06825 0.76 -0.4
1,528,377 - DDA3937_RS06825 0.76 +0.4
1,528,378 + DDA3937_RS06825 0.76 +1.4
1,528,397 + DDA3937_RS06825 0.77 +0.3
1,528,412 + DDA3937_RS06825 0.78 +0.2
1,528,412 + DDA3937_RS06825 0.78 +0.2
1,528,412 + DDA3937_RS06825 0.78 -1.8
1,528,412 + DDA3937_RS06825 0.78 +1.0
1,528,413 - DDA3937_RS06825 0.78 +0.7
1,528,480 + DDA3937_RS06825 0.81 -2.8
1,528,480 + DDA3937_RS06825 0.81 -0.5
1,528,480 + DDA3937_RS06825 0.81 +0.7
1,528,480 + DDA3937_RS06825 0.81 -0.2
1,528,481 - +0.5
1,528,481 - DDA3937_RS06825 0.81 +0.6
1,528,481 - DDA3937_RS06825 0.81 -1.7
1,528,484 + DDA3937_RS06825 0.81 -0.6
1,528,484 + DDA3937_RS06825 0.81 -0.0
1,528,484 + DDA3937_RS06825 0.81 -1.1
1,528,485 - DDA3937_RS06825 0.81 -1.7
1,528,485 - DDA3937_RS06825 0.81 +1.2
1,528,485 - DDA3937_RS06825 0.81 -0.3
1,528,485 - DDA3937_RS06825 0.81 -0.4
1,528,485 - DDA3937_RS06825 0.81 -0.2
1,528,530 - DDA3937_RS06825 0.83 -0.3
1,528,559 + DDA3937_RS06825 0.85 +0.5
1,528,559 + DDA3937_RS06825 0.85 -0.1
1,528,560 - DDA3937_RS06825 0.85 -0.3
1,528,560 - DDA3937_RS06825 0.85 +0.4
1,528,748 + +1.3
1,528,748 + -0.1
1,528,748 + -0.1
1,528,749 - -0.4
1,528,749 - -0.9
1,528,749 - -0.8
1,528,865 + -0.8
1,528,865 + +0.2
1,528,865 + -0.2
1,528,865 + -2.8
1,528,865 + -0.6
1,528,865 + -0.4
1,528,866 - +0.2
1,528,866 - -1.3
1,528,866 - +0.2
1,528,866 - +0.1
1,528,866 - +0.1
1,528,866 - -0.7
1,528,866 - -0.7
1,528,867 + -0.0
1,528,868 - -0.2
1,528,887 - -0.4
1,528,902 + -0.6
1,529,094 + -0.1
1,529,149 - +0.1
1,529,190 + +0.2
1,529,191 - -1.7
1,529,254 - -0.7
1,529,333 + DDA3937_RS23485 0.30 -1.4
1,529,333 + DDA3937_RS23485 0.30 +1.2
1,529,497 - -0.4
1,529,574 + +0.6
1,529,575 - -0.6
1,529,575 - -1.5
1,529,578 + -0.8
1,529,585 - +0.3
1,529,612 + -0.8
1,529,613 - -0.8
1,529,613 - +0.8
1,529,627 + -0.8
1,529,627 + -0.5
1,529,627 + -1.0
1,529,627 + -1.3
1,529,627 + +1.5
1,529,627 + +1.4
1,529,627 + +0.6
1,529,628 - -0.4
1,529,628 - +0.4
1,529,628 - +0.1
1,529,628 - -2.2
1,529,628 - -0.7
1,529,628 - -1.8
1,529,648 - +0.7
1,529,653 - +0.6
1,529,705 + -0.4
1,529,705 + -0.7
1,529,705 + +0.5
1,529,705 + -0.0
1,529,706 - +0.5
1,529,740 + -0.1
1,529,776 + -0.7
1,529,777 - -0.2
1,529,777 - +0.2
1,529,778 + +0.3
1,529,778 + -0.4
1,529,778 + +0.6
1,529,778 + +0.5
1,529,778 + +0.4
1,529,778 + +0.3
1,529,778 + +0.4
1,529,778 + +1.2
1,529,779 - +0.3
1,529,779 - -0.8
1,529,779 - -1.8
1,529,779 - +0.3
1,529,779 - -0.4
1,529,779 - -0.9
1,529,779 - -1.1
1,529,797 + -2.4
1,529,797 + -0.4
1,529,797 + +0.2
1,529,797 + +0.6
1,529,798 - +0.1
1,529,798 - -1.8
1,529,798 - +0.6
1,529,798 - -0.3
1,529,869 + -1.4
1,529,869 + +0.2
1,529,869 + +0.7
1,529,870 - -0.4
1,529,883 + +0.7
1,529,927 - DDA3937_RS06830 0.12 +0.6
1,530,147 + DDA3937_RS06830 0.33 -0.5
1,530,147 + DDA3937_RS06830 0.33 -0.2
1,530,216 + DDA3937_RS06830 0.40 +0.8
1,530,217 - DDA3937_RS06830 0.40 +0.4
1,530,217 - DDA3937_RS06830 0.40 -0.8
1,530,268 + DDA3937_RS06830 0.45 +1.7
1,530,268 + DDA3937_RS06830 0.45 -0.4
1,530,268 + DDA3937_RS06830 0.45 -0.4
1,530,268 + DDA3937_RS06830 0.45 -1.8
1,530,268 + DDA3937_RS06830 0.45 +1.0
1,530,268 + DDA3937_RS06830 0.45 -0.7
1,530,268 + DDA3937_RS06830 0.45 -0.3
1,530,269 - DDA3937_RS06830 0.45 -0.8
1,530,269 - DDA3937_RS06830 0.45 -0.1
1,530,269 - DDA3937_RS06830 0.45 -1.4
1,530,287 + DDA3937_RS06830 0.46 +0.2
1,530,287 + DDA3937_RS06830 0.46 -0.8
1,530,287 + DDA3937_RS06830 0.46 -0.1
1,530,287 + DDA3937_RS06830 0.46 +0.3
1,530,287 + DDA3937_RS06830 0.46 -0.6
1,530,288 - DDA3937_RS06830 0.46 +0.6
1,530,288 - DDA3937_RS06830 0.46 -0.1
1,530,288 - DDA3937_RS06830 0.46 +1.0
1,530,288 - DDA3937_RS06830 0.46 +1.3
1,530,291 + DDA3937_RS06830 0.47 +0.5
1,530,291 + DDA3937_RS06830 0.47 -1.4
1,530,291 + DDA3937_RS06830 0.47 -0.3
1,530,291 + DDA3937_RS06830 0.47 +0.7
1,530,291 + DDA3937_RS06830 0.47 -0.8
1,530,291 + DDA3937_RS06830 0.47 -1.8
1,530,291 + DDA3937_RS06830 0.47 -0.5
1,530,291 + DDA3937_RS06830 0.47 -0.4
1,530,291 + DDA3937_RS06830 0.47 -0.5
1,530,291 + DDA3937_RS06830 0.47 +0.4
1,530,291 + DDA3937_RS06830 0.47 -0.6
1,530,291 + DDA3937_RS06830 0.47 +0.8
1,530,291 + DDA3937_RS06830 0.47 +0.5
1,530,291 + DDA3937_RS06830 0.47 +0.4
1,530,292 - DDA3937_RS06830 0.47 +0.3
1,530,292 - DDA3937_RS06830 0.47 -0.2
1,530,292 - DDA3937_RS06830 0.47 +0.0
1,530,292 - DDA3937_RS06830 0.47 +0.0
1,530,292 - DDA3937_RS06830 0.47 +1.7
1,530,292 - DDA3937_RS06830 0.47 -1.5
1,530,292 - DDA3937_RS06830 0.47 -0.9
1,530,292 - DDA3937_RS06830 0.47 +1.2
1,530,296 - DDA3937_RS06830 0.47 +0.2
1,530,296 - DDA3937_RS06830 0.47 -1.3
1,530,296 - DDA3937_RS06830 0.47 -0.2
1,530,323 - DDA3937_RS06830 0.50 -0.1
1,530,323 - DDA3937_RS06830 0.50 -1.4
1,530,387 + DDA3937_RS06830 0.56 +1.2
1,530,387 + DDA3937_RS06830 0.56 +0.4
1,530,388 - +1.5
1,530,400 + DDA3937_RS06830 0.57 -2.0
1,530,400 + DDA3937_RS06830 0.57 -1.0
1,530,400 + DDA3937_RS06830 0.57 -1.3
1,530,400 + DDA3937_RS06830 0.57 -0.7
1,530,400 + DDA3937_RS06830 0.57 +0.2
1,530,412 + DDA3937_RS06830 0.58 +0.7

Or see this region's nucleotide sequence