Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01115 and DDA3937_RS23385 are separated by 267 nucleotides DDA3937_RS23385 and DDA3937_RS21760 are separated by 224 nucleotides DDA3937_RS21760 and DDA3937_RS01120 are separated by 158 nucleotides
DDA3937_RS01115: DDA3937_RS01115 - DUF1176 domain-containing protein, at 256,044 to 257,141
_RS01115
DDA3937_RS23385: DDA3937_RS23385 - DUF1127 domain-containing protein, at 257,409 to 257,591
_RS23385
DDA3937_RS21760: DDA3937_RS21760 - DUF1127 domain-containing protein, at 257,816 to 258,001
_RS21760
DDA3937_RS01120: DDA3937_RS01120 - PLP-dependent aminotransferase family protein, at 258,160 to 259,596
_RS01120
Position (kb) 257
258
259 Strain fitness (log2 ratio) -2
-1
0
1
2 at 256.892 kb on + strand, within DDA3937_RS01115 at 256.893 kb on - strand, within DDA3937_RS01115 at 256.947 kb on + strand, within DDA3937_RS01115 at 256.948 kb on - strand, within DDA3937_RS01115 at 256.971 kb on + strand, within DDA3937_RS01115 at 256.972 kb on - strand, within DDA3937_RS01115 at 257.026 kb on + strand at 257.026 kb on + strand, within DDA3937_RS01115 at 257.026 kb on + strand, within DDA3937_RS01115 at 257.027 kb on - strand, within DDA3937_RS01115 at 257.027 kb on - strand, within DDA3937_RS01115 at 257.058 kb on + strand at 257.058 kb on + strand at 257.064 kb on + strand at 257.064 kb on + strand at 257.064 kb on + strand at 257.065 kb on - strand at 257.065 kb on - strand at 257.065 kb on - strand at 257.234 kb on - strand at 257.250 kb on + strand at 257.250 kb on + strand at 257.251 kb on - strand at 257.251 kb on - strand at 257.251 kb on - strand at 257.251 kb on - strand at 257.302 kb on + strand at 257.303 kb on - strand at 257.327 kb on + strand at 257.410 kb on + strand at 257.411 kb on - strand at 257.415 kb on + strand at 257.415 kb on + strand at 257.415 kb on + strand at 257.415 kb on + strand at 257.415 kb on + strand at 257.415 kb on + strand at 257.415 kb on + strand at 257.415 kb on + strand at 257.416 kb on - strand at 257.416 kb on - strand at 257.416 kb on - strand at 257.416 kb on - strand at 257.416 kb on - strand at 257.416 kb on - strand at 257.416 kb on - strand at 257.440 kb on - strand, within DDA3937_RS23385 at 257.445 kb on + strand, within DDA3937_RS23385 at 257.445 kb on + strand, within DDA3937_RS23385 at 257.445 kb on + strand, within DDA3937_RS23385 at 257.445 kb on + strand, within DDA3937_RS23385 at 257.445 kb on + strand, within DDA3937_RS23385 at 257.446 kb on - strand, within DDA3937_RS23385 at 257.446 kb on - strand, within DDA3937_RS23385 at 257.446 kb on - strand, within DDA3937_RS23385 at 257.446 kb on - strand, within DDA3937_RS23385 at 257.474 kb on + strand, within DDA3937_RS23385 at 257.475 kb on - strand, within DDA3937_RS23385 at 257.475 kb on - strand, within DDA3937_RS23385 at 257.475 kb on - strand, within DDA3937_RS23385 at 257.475 kb on - strand, within DDA3937_RS23385 at 257.479 kb on - strand, within DDA3937_RS23385 at 257.497 kb on - strand, within DDA3937_RS23385 at 257.564 kb on + strand, within DDA3937_RS23385 at 257.565 kb on - strand, within DDA3937_RS23385 at 257.597 kb on + strand at 257.598 kb on - strand at 257.607 kb on - strand at 257.677 kb on + strand at 257.678 kb on - strand at 257.678 kb on - strand at 257.678 kb on - strand at 257.678 kb on - strand at 257.678 kb on - strand at 257.678 kb on - strand at 257.678 kb on - strand at 257.678 kb on - strand at 257.693 kb on + strand at 257.694 kb on - strand at 257.727 kb on - strand at 257.756 kb on - strand at 257.769 kb on - strand at 257.850 kb on - strand at 257.924 kb on + strand, within DDA3937_RS21760 at 257.924 kb on + strand, within DDA3937_RS21760 at 257.924 kb on + strand, within DDA3937_RS21760 at 257.924 kb on + strand, within DDA3937_RS21760 at 257.924 kb on + strand, within DDA3937_RS21760 at 257.924 kb on + strand, within DDA3937_RS21760 at 257.924 kb on + strand, within DDA3937_RS21760 at 257.925 kb on - strand, within DDA3937_RS21760 at 257.925 kb on - strand, within DDA3937_RS21760 at 257.925 kb on - strand, within DDA3937_RS21760 at 257.925 kb on - strand, within DDA3937_RS21760 at 257.925 kb on - strand, within DDA3937_RS21760 at 257.925 kb on - strand, within DDA3937_RS21760 at 257.925 kb on - strand, within DDA3937_RS21760 at 257.925 kb on - strand, within DDA3937_RS21760 at 257.927 kb on + strand, within DDA3937_RS21760 at 257.927 kb on + strand, within DDA3937_RS21760 at 257.927 kb on + strand, within DDA3937_RS21760 at 257.965 kb on + strand, within DDA3937_RS21760 at 257.965 kb on + strand, within DDA3937_RS21760 at 257.966 kb on - strand, within DDA3937_RS21760 at 257.966 kb on - strand, within DDA3937_RS21760 at 257.966 kb on - strand, within DDA3937_RS21760 at 257.969 kb on + strand, within DDA3937_RS21760 at 257.969 kb on + strand, within DDA3937_RS21760 at 257.969 kb on + strand, within DDA3937_RS21760 at 257.969 kb on + strand, within DDA3937_RS21760 at 257.969 kb on + strand, within DDA3937_RS21760 at 257.969 kb on + strand, within DDA3937_RS21760 at 257.970 kb on - strand, within DDA3937_RS21760 at 257.970 kb on - strand, within DDA3937_RS21760 at 257.972 kb on + strand, within DDA3937_RS21760 at 257.972 kb on + strand, within DDA3937_RS21760 at 257.972 kb on + strand, within DDA3937_RS21760 at 257.972 kb on + strand, within DDA3937_RS21760 at 257.973 kb on - strand, within DDA3937_RS21760 at 257.973 kb on - strand, within DDA3937_RS21760 at 257.973 kb on - strand, within DDA3937_RS21760 at 257.973 kb on - strand, within DDA3937_RS21760 at 257.995 kb on + strand at 257.995 kb on + strand at 257.996 kb on - strand at 257.996 kb on - strand at 257.996 kb on - strand at 257.996 kb on - strand at 257.996 kb on - strand at 258.004 kb on + strand at 258.004 kb on + strand at 258.005 kb on - strand at 258.005 kb on - strand at 258.005 kb on - strand at 258.089 kb on - strand at 258.137 kb on + strand at 258.137 kb on + strand at 258.138 kb on - strand at 258.138 kb on - strand at 258.188 kb on + strand at 258.188 kb on + strand at 258.188 kb on + strand at 258.287 kb on + strand at 258.287 kb on + strand at 258.288 kb on - strand at 258.288 kb on - strand at 258.288 kb on - strand at 258.298 kb on + strand at 258.298 kb on + strand at 258.298 kb on + strand at 258.298 kb on + strand at 258.299 kb on - strand at 258.299 kb on - strand at 258.299 kb on - strand at 258.299 kb on - strand at 258.299 kb on - strand at 258.299 kb on - strand at 258.301 kb on + strand at 258.301 kb on + strand at 258.301 kb on + strand at 258.301 kb on + strand at 258.302 kb on - strand at 258.349 kb on + strand, within DDA3937_RS01120 at 258.349 kb on + strand, within DDA3937_RS01120 at 258.350 kb on - strand, within DDA3937_RS01120 at 258.506 kb on + strand, within DDA3937_RS01120 at 258.507 kb on - strand, within DDA3937_RS01120 at 258.522 kb on + strand, within DDA3937_RS01120 at 258.522 kb on + strand, within DDA3937_RS01120 at 258.656 kb on + strand, within DDA3937_RS01120 at 258.656 kb on + strand, within DDA3937_RS01120 at 258.690 kb on + strand, within DDA3937_RS01120 at 258.690 kb on + strand, within DDA3937_RS01120 at 258.691 kb on - strand, within DDA3937_RS01120 at 258.738 kb on + strand, within DDA3937_RS01120 at 258.749 kb on + strand, within DDA3937_RS01120 at 258.749 kb on + strand, within DDA3937_RS01120 at 258.750 kb on - strand, within DDA3937_RS01120 at 258.894 kb on + strand, within DDA3937_RS01120 at 258.895 kb on - strand, within DDA3937_RS01120
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 256,892 + DDA3937_RS01115 0.77 +0.1 256,893 - DDA3937_RS01115 0.77 +0.7 256,947 + DDA3937_RS01115 0.82 -0.8 256,948 - DDA3937_RS01115 0.82 +0.5 256,971 + DDA3937_RS01115 0.84 +0.2 256,972 - DDA3937_RS01115 0.85 -0.7 257,026 + -0.9 257,026 + DDA3937_RS01115 0.89 -0.4 257,026 + DDA3937_RS01115 0.89 +0.5 257,027 - DDA3937_RS01115 0.90 -0.9 257,027 - DDA3937_RS01115 0.90 -0.0 257,058 + +0.1 257,058 + -0.9 257,064 + -0.3 257,064 + +0.7 257,064 + -0.2 257,065 - -0.3 257,065 - -0.5 257,065 - -0.3 257,234 - +0.1 257,250 + -0.7 257,250 + -0.3 257,251 - -0.0 257,251 - +0.3 257,251 - +1.0 257,251 - -0.2 257,302 + -0.1 257,303 - -0.1 257,327 + +0.0 257,410 + +1.0 257,411 - -0.6 257,415 + +0.2 257,415 + -0.1 257,415 + -0.9 257,415 + -0.6 257,415 + +1.3 257,415 + -0.2 257,415 + -0.3 257,415 + -2.1 257,416 - -0.9 257,416 - -1.6 257,416 - -1.4 257,416 - -1.9 257,416 - -0.5 257,416 - +1.1 257,416 - -0.3 257,440 - DDA3937_RS23385 0.17 -0.2 257,445 + DDA3937_RS23385 0.20 +0.3 257,445 + DDA3937_RS23385 0.20 +0.6 257,445 + DDA3937_RS23385 0.20 +0.7 257,445 + DDA3937_RS23385 0.20 +0.4 257,445 + DDA3937_RS23385 0.20 +1.2 257,446 - DDA3937_RS23385 0.20 -0.9 257,446 - DDA3937_RS23385 0.20 +0.3 257,446 - DDA3937_RS23385 0.20 +1.1 257,446 - DDA3937_RS23385 0.20 -0.6 257,474 + DDA3937_RS23385 0.36 +0.1 257,475 - DDA3937_RS23385 0.36 +1.4 257,475 - DDA3937_RS23385 0.36 -1.2 257,475 - DDA3937_RS23385 0.36 -1.0 257,475 - DDA3937_RS23385 0.36 -1.5 257,479 - DDA3937_RS23385 0.38 -0.2 257,497 - DDA3937_RS23385 0.48 -0.3 257,564 + DDA3937_RS23385 0.85 -0.5 257,565 - DDA3937_RS23385 0.85 -0.1 257,597 + -0.3 257,598 - -0.2 257,607 - +1.0 257,677 + -0.4 257,678 - -0.9 257,678 - -0.3 257,678 - +1.6 257,678 - +0.2 257,678 - -1.1 257,678 - -1.3 257,678 - +1.5 257,678 - +0.7 257,693 + +1.4 257,694 - +0.7 257,727 - +1.3 257,756 - +0.3 257,769 - +0.3 257,850 - +0.7 257,924 + DDA3937_RS21760 0.58 +1.4 257,924 + DDA3937_RS21760 0.58 -0.1 257,924 + DDA3937_RS21760 0.58 +0.3 257,924 + DDA3937_RS21760 0.58 -0.6 257,924 + DDA3937_RS21760 0.58 -0.1 257,924 + DDA3937_RS21760 0.58 -0.9 257,924 + DDA3937_RS21760 0.58 +0.3 257,925 - DDA3937_RS21760 0.59 -1.6 257,925 - DDA3937_RS21760 0.59 +1.1 257,925 - DDA3937_RS21760 0.59 +1.0 257,925 - DDA3937_RS21760 0.59 -2.5 257,925 - DDA3937_RS21760 0.59 -2.2 257,925 - DDA3937_RS21760 0.59 +0.2 257,925 - DDA3937_RS21760 0.59 +1.9 257,925 - DDA3937_RS21760 0.59 -1.6 257,927 + DDA3937_RS21760 0.60 +0.7 257,927 + DDA3937_RS21760 0.60 +0.3 257,927 + DDA3937_RS21760 0.60 +0.7 257,965 + DDA3937_RS21760 0.80 -0.3 257,965 + DDA3937_RS21760 0.80 +0.4 257,966 - DDA3937_RS21760 0.81 +0.9 257,966 - DDA3937_RS21760 0.81 -2.1 257,966 - DDA3937_RS21760 0.81 +0.1 257,969 + DDA3937_RS21760 0.82 +0.9 257,969 + DDA3937_RS21760 0.82 +0.5 257,969 + DDA3937_RS21760 0.82 -0.3 257,969 + DDA3937_RS21760 0.82 +0.7 257,969 + DDA3937_RS21760 0.82 -0.2 257,969 + DDA3937_RS21760 0.82 +0.1 257,970 - DDA3937_RS21760 0.83 +1.3 257,970 - DDA3937_RS21760 0.83 -2.0 257,972 + DDA3937_RS21760 0.84 +0.2 257,972 + DDA3937_RS21760 0.84 +0.4 257,972 + DDA3937_RS21760 0.84 +0.7 257,972 + DDA3937_RS21760 0.84 +0.6 257,973 - DDA3937_RS21760 0.84 -0.6 257,973 - DDA3937_RS21760 0.84 +1.6 257,973 - DDA3937_RS21760 0.84 -0.2 257,973 - DDA3937_RS21760 0.84 -0.7 257,995 + -0.4 257,995 + -0.3 257,996 - +0.4 257,996 - -0.1 257,996 - -0.3 257,996 - -1.0 257,996 - +2.5 258,004 + -0.2 258,004 + +0.1 258,005 - -0.2 258,005 - +0.1 258,005 - -1.1 258,089 - +1.0 258,137 + +0.4 258,137 + -0.9 258,138 - -0.3 258,138 - +0.1 258,188 + +0.6 258,188 + -0.5 258,188 + -0.2 258,287 + -1.1 258,287 + +0.4 258,288 - -0.5 258,288 - +0.4 258,288 - +0.0 258,298 + -0.5 258,298 + +0.3 258,298 + +0.7 258,298 + -1.5 258,299 - -0.8 258,299 - +0.2 258,299 - -0.6 258,299 - +1.7 258,299 - -0.1 258,299 - +1.4 258,301 + -0.3 258,301 + +0.7 258,301 + +0.0 258,301 + -0.1 258,302 - -1.7 258,349 + DDA3937_RS01120 0.13 -0.3 258,349 + DDA3937_RS01120 0.13 -0.1 258,350 - DDA3937_RS01120 0.13 +0.6 258,506 + DDA3937_RS01120 0.24 -0.0 258,507 - DDA3937_RS01120 0.24 -0.2 258,522 + DDA3937_RS01120 0.25 -0.4 258,522 + DDA3937_RS01120 0.25 -1.5 258,656 + DDA3937_RS01120 0.35 +1.0 258,656 + DDA3937_RS01120 0.35 -1.9 258,690 + DDA3937_RS01120 0.37 +0.6 258,690 + DDA3937_RS01120 0.37 -0.6 258,691 - DDA3937_RS01120 0.37 -0.3 258,738 + DDA3937_RS01120 0.40 -0.2 258,749 + DDA3937_RS01120 0.41 +1.1 258,749 + DDA3937_RS01120 0.41 -0.2 258,750 - DDA3937_RS01120 0.41 -0.3 258,894 + DDA3937_RS01120 0.51 -1.6 258,895 - DDA3937_RS01120 0.51 -0.2
Or see this region's nucleotide sequence