Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS20800 and DDA3937_RS20805 are separated by 282 nucleotides DDA3937_RS20805 and DDA3937_RS20810 overlap by 13 nucleotides DDA3937_RS20810 and DDA3937_RS20815 overlap by 44 nucleotides
DDA3937_RS20800: DDA3937_RS20800 - 3-oxoacyl-ACP synthase, at 4,726,038 to 4,726,976
_RS20800
DDA3937_RS20805: DDA3937_RS20805 - DUF2807 domain-containing protein, at 4,727,259 to 4,727,900
_RS20805
DDA3937_RS20810: DDA3937_RS20810 - 4'-phosphopantetheinyl transferase superfamily protein, at 4,727,888 to 4,728,658
_RS20810
DDA3937_RS20815: DDA3937_RS20815 - two-component system sensor histidine kinase VfmI, at 4,728,615 to 4,729,934
_RS20815
Position (kb) 4727
4728
4729 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4726.974 kb on + strand at 4726.975 kb on - strand at 4727.020 kb on + strand at 4727.044 kb on - strand at 4727.044 kb on - strand at 4727.047 kb on + strand at 4727.062 kb on + strand at 4727.062 kb on + strand at 4727.062 kb on + strand at 4727.062 kb on + strand at 4727.062 kb on + strand at 4727.063 kb on - strand at 4727.063 kb on - strand at 4727.063 kb on - strand at 4727.063 kb on - strand at 4727.063 kb on - strand at 4727.065 kb on + strand at 4727.065 kb on + strand at 4727.065 kb on + strand at 4727.065 kb on + strand at 4727.066 kb on - strand at 4727.066 kb on - strand at 4727.066 kb on - strand at 4727.066 kb on - strand at 4727.117 kb on + strand at 4727.118 kb on - strand at 4727.118 kb on - strand at 4727.118 kb on - strand at 4727.118 kb on - strand at 4727.118 kb on - strand at 4727.118 kb on - strand at 4727.181 kb on - strand at 4727.207 kb on - strand at 4727.507 kb on + strand, within DDA3937_RS20805 at 4727.558 kb on + strand, within DDA3937_RS20805 at 4727.561 kb on + strand, within DDA3937_RS20805 at 4727.561 kb on + strand, within DDA3937_RS20805 at 4727.561 kb on + strand, within DDA3937_RS20805 at 4727.562 kb on - strand, within DDA3937_RS20805 at 4727.672 kb on + strand, within DDA3937_RS20805 at 4727.672 kb on + strand, within DDA3937_RS20805 at 4727.672 kb on + strand, within DDA3937_RS20805 at 4727.774 kb on - strand, within DDA3937_RS20805 at 4727.855 kb on + strand at 4727.881 kb on + strand at 4727.881 kb on + strand at 4727.881 kb on + strand at 4727.882 kb on - strand at 4727.936 kb on + strand at 4727.937 kb on - strand at 4727.937 kb on - strand at 4727.937 kb on - strand at 4727.937 kb on - strand at 4727.971 kb on + strand, within DDA3937_RS20810 at 4727.971 kb on + strand, within DDA3937_RS20810 at 4727.972 kb on - strand, within DDA3937_RS20810 at 4727.988 kb on + strand, within DDA3937_RS20810 at 4727.988 kb on + strand, within DDA3937_RS20810 at 4727.988 kb on + strand, within DDA3937_RS20810 at 4727.989 kb on - strand, within DDA3937_RS20810 at 4728.074 kb on - strand, within DDA3937_RS20810 at 4728.147 kb on + strand, within DDA3937_RS20810 at 4728.147 kb on + strand, within DDA3937_RS20810 at 4728.148 kb on - strand, within DDA3937_RS20810 at 4728.148 kb on - strand, within DDA3937_RS20810 at 4728.148 kb on - strand, within DDA3937_RS20810 at 4728.148 kb on - strand, within DDA3937_RS20810 at 4728.148 kb on - strand, within DDA3937_RS20810 at 4728.148 kb on - strand, within DDA3937_RS20810 at 4728.263 kb on - strand, within DDA3937_RS20810 at 4728.340 kb on + strand, within DDA3937_RS20810 at 4728.340 kb on + strand, within DDA3937_RS20810 at 4728.341 kb on - strand, within DDA3937_RS20810 at 4728.353 kb on + strand, within DDA3937_RS20810 at 4728.353 kb on + strand, within DDA3937_RS20810 at 4728.419 kb on + strand, within DDA3937_RS20810 at 4728.575 kb on + strand, within DDA3937_RS20810 at 4728.575 kb on + strand, within DDA3937_RS20810 at 4728.576 kb on - strand, within DDA3937_RS20810 at 4728.576 kb on - strand, within DDA3937_RS20810 at 4728.576 kb on - strand, within DDA3937_RS20810 at 4728.576 kb on - strand, within DDA3937_RS20810 at 4728.592 kb on - strand at 4728.592 kb on - strand at 4728.635 kb on + strand at 4728.635 kb on + strand at 4728.636 kb on - strand at 4728.636 kb on - strand at 4728.754 kb on + strand, within DDA3937_RS20815 at 4728.754 kb on + strand, within DDA3937_RS20815 at 4728.755 kb on - strand, within DDA3937_RS20815 at 4728.755 kb on - strand, within DDA3937_RS20815 at 4728.815 kb on + strand, within DDA3937_RS20815 at 4728.974 kb on + strand, within DDA3937_RS20815 at 4728.974 kb on + strand, within DDA3937_RS20815 at 4728.974 kb on + strand, within DDA3937_RS20815 at 4729.067 kb on - strand, within DDA3937_RS20815 at 4729.154 kb on + strand, within DDA3937_RS20815 at 4729.154 kb on + strand, within DDA3937_RS20815 at 4729.302 kb on + strand, within DDA3937_RS20815 at 4729.302 kb on + strand, within DDA3937_RS20815 at 4729.303 kb on - strand, within DDA3937_RS20815 at 4729.303 kb on - strand, within DDA3937_RS20815 at 4729.303 kb on - strand, within DDA3937_RS20815 at 4729.500 kb on - strand, within DDA3937_RS20815 at 4729.500 kb on - strand, within DDA3937_RS20815 at 4729.544 kb on + strand, within DDA3937_RS20815 at 4729.545 kb on - strand, within DDA3937_RS20815 at 4729.550 kb on + strand, within DDA3937_RS20815 at 4729.550 kb on + strand, within DDA3937_RS20815 at 4729.551 kb on - strand, within DDA3937_RS20815 at 4729.560 kb on + strand, within DDA3937_RS20815 at 4729.561 kb on - strand, within DDA3937_RS20815 at 4729.561 kb on - strand, within DDA3937_RS20815 at 4729.576 kb on + strand, within DDA3937_RS20815 at 4729.576 kb on + strand, within DDA3937_RS20815 at 4729.576 kb on + strand, within DDA3937_RS20815 at 4729.576 kb on + strand, within DDA3937_RS20815 at 4729.576 kb on + strand, within DDA3937_RS20815 at 4729.576 kb on + strand, within DDA3937_RS20815 at 4729.576 kb on + strand, within DDA3937_RS20815 at 4729.576 kb on + strand, within DDA3937_RS20815 at 4729.576 kb on + strand, within DDA3937_RS20815 at 4729.576 kb on + strand, within DDA3937_RS20815 at 4729.576 kb on + strand, within DDA3937_RS20815 at 4729.576 kb on + strand, within DDA3937_RS20815 at 4729.576 kb on + strand, within DDA3937_RS20815 at 4729.576 kb on + strand, within DDA3937_RS20815 at 4729.577 kb on - strand, within DDA3937_RS20815 at 4729.577 kb on - strand, within DDA3937_RS20815 at 4729.577 kb on - strand, within DDA3937_RS20815 at 4729.577 kb on - strand, within DDA3937_RS20815 at 4729.577 kb on - strand, within DDA3937_RS20815 at 4729.577 kb on - strand, within DDA3937_RS20815 at 4729.577 kb on - strand, within DDA3937_RS20815 at 4729.577 kb on - strand, within DDA3937_RS20815 at 4729.577 kb on - strand, within DDA3937_RS20815 at 4729.577 kb on - strand, within DDA3937_RS20815 at 4729.577 kb on - strand, within DDA3937_RS20815 at 4729.577 kb on - strand, within DDA3937_RS20815 at 4729.577 kb on - strand, within DDA3937_RS20815 at 4729.577 kb on - strand, within DDA3937_RS20815 at 4729.577 kb on - strand, within DDA3937_RS20815 at 4729.577 kb on - strand at 4729.577 kb on - strand, within DDA3937_RS20815 at 4729.577 kb on - strand, within DDA3937_RS20815 at 4729.577 kb on - strand, within DDA3937_RS20815 at 4729.577 kb on - strand, within DDA3937_RS20815 at 4729.577 kb on - strand, within DDA3937_RS20815 at 4729.577 kb on - strand, within DDA3937_RS20815 at 4729.577 kb on - strand, within DDA3937_RS20815 at 4729.579 kb on + strand, within DDA3937_RS20815 at 4729.579 kb on + strand, within DDA3937_RS20815 at 4729.579 kb on + strand, within DDA3937_RS20815 at 4729.579 kb on + strand, within DDA3937_RS20815 at 4729.579 kb on + strand, within DDA3937_RS20815 at 4729.579 kb on + strand, within DDA3937_RS20815 at 4729.579 kb on + strand, within DDA3937_RS20815 at 4729.579 kb on + strand, within DDA3937_RS20815 at 4729.579 kb on + strand, within DDA3937_RS20815 at 4729.580 kb on - strand, within DDA3937_RS20815 at 4729.580 kb on - strand, within DDA3937_RS20815 at 4729.580 kb on - strand, within DDA3937_RS20815 at 4729.580 kb on - strand, within DDA3937_RS20815 at 4729.580 kb on - strand, within DDA3937_RS20815 at 4729.580 kb on - strand, within DDA3937_RS20815 at 4729.580 kb on - strand, within DDA3937_RS20815 at 4729.580 kb on - strand, within DDA3937_RS20815 at 4729.580 kb on - strand, within DDA3937_RS20815 at 4729.580 kb on - strand, within DDA3937_RS20815 at 4729.580 kb on - strand, within DDA3937_RS20815 at 4729.580 kb on - strand, within DDA3937_RS20815
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,726,974 + -0.4 4,726,975 - +0.2 4,727,020 + +0.5 4,727,044 - -0.9 4,727,044 - -0.2 4,727,047 + +0.3 4,727,062 + +0.0 4,727,062 + -0.8 4,727,062 + +0.4 4,727,062 + +0.1 4,727,062 + -1.8 4,727,063 - +2.1 4,727,063 - +2.7 4,727,063 - -0.0 4,727,063 - -1.5 4,727,063 - +0.3 4,727,065 + +0.9 4,727,065 + -0.6 4,727,065 + +0.5 4,727,065 + -0.0 4,727,066 - +0.9 4,727,066 - -1.4 4,727,066 - -0.1 4,727,066 - -0.3 4,727,117 + -1.7 4,727,118 - -1.1 4,727,118 - +0.4 4,727,118 - -0.3 4,727,118 - +0.9 4,727,118 - -0.4 4,727,118 - -0.9 4,727,181 - +1.3 4,727,207 - -0.6 4,727,507 + DDA3937_RS20805 0.39 -1.2 4,727,558 + DDA3937_RS20805 0.47 -1.4 4,727,561 + DDA3937_RS20805 0.47 +0.6 4,727,561 + DDA3937_RS20805 0.47 +0.7 4,727,561 + DDA3937_RS20805 0.47 +0.2 4,727,562 - DDA3937_RS20805 0.47 -2.1 4,727,672 + DDA3937_RS20805 0.64 +1.2 4,727,672 + DDA3937_RS20805 0.64 +0.2 4,727,672 + DDA3937_RS20805 0.64 +0.3 4,727,774 - DDA3937_RS20805 0.80 -0.3 4,727,855 + -1.1 4,727,881 + -0.0 4,727,881 + -1.6 4,727,881 + +0.0 4,727,882 - -0.1 4,727,936 + -0.5 4,727,937 - -0.0 4,727,937 - -0.5 4,727,937 - +0.4 4,727,937 - -0.7 4,727,971 + DDA3937_RS20810 0.11 -2.6 4,727,971 + DDA3937_RS20810 0.11 -0.3 4,727,972 - DDA3937_RS20810 0.11 +0.0 4,727,988 + DDA3937_RS20810 0.13 -0.7 4,727,988 + DDA3937_RS20810 0.13 -0.1 4,727,988 + DDA3937_RS20810 0.13 -0.6 4,727,989 - DDA3937_RS20810 0.13 -0.2 4,728,074 - DDA3937_RS20810 0.24 -0.9 4,728,147 + DDA3937_RS20810 0.34 -0.8 4,728,147 + DDA3937_RS20810 0.34 -0.2 4,728,148 - DDA3937_RS20810 0.34 -1.0 4,728,148 - DDA3937_RS20810 0.34 +0.7 4,728,148 - DDA3937_RS20810 0.34 +0.7 4,728,148 - DDA3937_RS20810 0.34 -2.7 4,728,148 - DDA3937_RS20810 0.34 +0.4 4,728,148 - DDA3937_RS20810 0.34 +1.0 4,728,263 - DDA3937_RS20810 0.49 -0.1 4,728,340 + DDA3937_RS20810 0.59 -0.1 4,728,340 + DDA3937_RS20810 0.59 -0.4 4,728,341 - DDA3937_RS20810 0.59 +0.6 4,728,353 + DDA3937_RS20810 0.60 +1.4 4,728,353 + DDA3937_RS20810 0.60 +1.0 4,728,419 + DDA3937_RS20810 0.69 -1.3 4,728,575 + DDA3937_RS20810 0.89 +0.2 4,728,575 + DDA3937_RS20810 0.89 +0.1 4,728,576 - DDA3937_RS20810 0.89 -0.3 4,728,576 - DDA3937_RS20810 0.89 +0.5 4,728,576 - DDA3937_RS20810 0.89 -0.4 4,728,576 - DDA3937_RS20810 0.89 -1.6 4,728,592 - -0.1 4,728,592 - -0.5 4,728,635 + +0.9 4,728,635 + +1.7 4,728,636 - -0.6 4,728,636 - +0.4 4,728,754 + DDA3937_RS20815 0.11 +0.2 4,728,754 + DDA3937_RS20815 0.11 +0.6 4,728,755 - DDA3937_RS20815 0.11 +1.2 4,728,755 - DDA3937_RS20815 0.11 +1.3 4,728,815 + DDA3937_RS20815 0.15 +1.1 4,728,974 + DDA3937_RS20815 0.27 +0.0 4,728,974 + DDA3937_RS20815 0.27 +0.8 4,728,974 + DDA3937_RS20815 0.27 +1.5 4,729,067 - DDA3937_RS20815 0.34 +1.1 4,729,154 + DDA3937_RS20815 0.41 +0.7 4,729,154 + DDA3937_RS20815 0.41 -0.4 4,729,302 + DDA3937_RS20815 0.52 +0.1 4,729,302 + DDA3937_RS20815 0.52 +0.9 4,729,303 - DDA3937_RS20815 0.52 +0.8 4,729,303 - DDA3937_RS20815 0.52 -0.4 4,729,303 - DDA3937_RS20815 0.52 +1.4 4,729,500 - DDA3937_RS20815 0.67 -0.3 4,729,500 - DDA3937_RS20815 0.67 +0.7 4,729,544 + DDA3937_RS20815 0.70 -0.6 4,729,545 - DDA3937_RS20815 0.70 +1.0 4,729,550 + DDA3937_RS20815 0.71 +0.7 4,729,550 + DDA3937_RS20815 0.71 +0.9 4,729,551 - DDA3937_RS20815 0.71 +0.2 4,729,560 + DDA3937_RS20815 0.72 +0.8 4,729,561 - DDA3937_RS20815 0.72 -0.4 4,729,561 - DDA3937_RS20815 0.72 +0.5 4,729,576 + DDA3937_RS20815 0.73 +1.1 4,729,576 + DDA3937_RS20815 0.73 -0.2 4,729,576 + DDA3937_RS20815 0.73 +1.4 4,729,576 + DDA3937_RS20815 0.73 +1.0 4,729,576 + DDA3937_RS20815 0.73 +0.5 4,729,576 + DDA3937_RS20815 0.73 +1.2 4,729,576 + DDA3937_RS20815 0.73 +1.1 4,729,576 + DDA3937_RS20815 0.73 +0.5 4,729,576 + DDA3937_RS20815 0.73 +1.6 4,729,576 + DDA3937_RS20815 0.73 +1.2 4,729,576 + DDA3937_RS20815 0.73 +0.4 4,729,576 + DDA3937_RS20815 0.73 +1.1 4,729,576 + DDA3937_RS20815 0.73 +1.1 4,729,576 + DDA3937_RS20815 0.73 +1.3 4,729,577 - DDA3937_RS20815 0.73 +0.5 4,729,577 - DDA3937_RS20815 0.73 +0.3 4,729,577 - DDA3937_RS20815 0.73 +0.7 4,729,577 - DDA3937_RS20815 0.73 +0.8 4,729,577 - DDA3937_RS20815 0.73 +1.1 4,729,577 - DDA3937_RS20815 0.73 -0.2 4,729,577 - DDA3937_RS20815 0.73 +1.9 4,729,577 - DDA3937_RS20815 0.73 +0.9 4,729,577 - DDA3937_RS20815 0.73 +0.9 4,729,577 - DDA3937_RS20815 0.73 +0.7 4,729,577 - DDA3937_RS20815 0.73 +0.5 4,729,577 - DDA3937_RS20815 0.73 +1.0 4,729,577 - DDA3937_RS20815 0.73 -1.5 4,729,577 - DDA3937_RS20815 0.73 +0.6 4,729,577 - DDA3937_RS20815 0.73 +1.4 4,729,577 - +0.7 4,729,577 - DDA3937_RS20815 0.73 +0.6 4,729,577 - DDA3937_RS20815 0.73 +0.5 4,729,577 - DDA3937_RS20815 0.73 +0.9 4,729,577 - DDA3937_RS20815 0.73 +0.4 4,729,577 - DDA3937_RS20815 0.73 +0.8 4,729,577 - DDA3937_RS20815 0.73 +2.0 4,729,577 - DDA3937_RS20815 0.73 +1.0 4,729,579 + DDA3937_RS20815 0.73 -0.2 4,729,579 + DDA3937_RS20815 0.73 +0.9 4,729,579 + DDA3937_RS20815 0.73 +0.4 4,729,579 + DDA3937_RS20815 0.73 +0.7 4,729,579 + DDA3937_RS20815 0.73 +1.2 4,729,579 + DDA3937_RS20815 0.73 +1.6 4,729,579 + DDA3937_RS20815 0.73 +1.2 4,729,579 + DDA3937_RS20815 0.73 +0.2 4,729,579 + DDA3937_RS20815 0.73 +0.8 4,729,580 - DDA3937_RS20815 0.73 +1.5 4,729,580 - DDA3937_RS20815 0.73 +0.1 4,729,580 - DDA3937_RS20815 0.73 +2.2 4,729,580 - DDA3937_RS20815 0.73 +1.3 4,729,580 - DDA3937_RS20815 0.73 +0.9 4,729,580 - DDA3937_RS20815 0.73 +1.6 4,729,580 - DDA3937_RS20815 0.73 +0.1 4,729,580 - DDA3937_RS20815 0.73 +0.8 4,729,580 - DDA3937_RS20815 0.73 +1.1 4,729,580 - DDA3937_RS20815 0.73 +0.5 4,729,580 - DDA3937_RS20815 0.73 +0.7 4,729,580 - DDA3937_RS20815 0.73 +0.2
Or see this region's nucleotide sequence