Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS20170 and DDA3937_RS22530 are separated by 139 nucleotides DDA3937_RS22530 and DDA3937_RS20175 are separated by 138 nucleotides DDA3937_RS20175 and DDA3937_RS20180 are separated by 344 nucleotides
DDA3937_RS20170: DDA3937_RS20170 - acetolactate synthase 2 catalytic subunit, at 4,596,265 to 4,597,911
_RS20170
DDA3937_RS22530: DDA3937_RS22530 - ilv operon leader peptide, at 4,598,051 to 4,598,149
_RS22530
DDA3937_RS20175: DDA3937_RS20175 - MFS transporter, at 4,598,288 to 4,599,502
_RS20175
DDA3937_RS20180: DDA3937_RS20180 - YifB family Mg chelatase-like AAA ATPase, at 4,599,847 to 4,601,373
_RS20180
Position (kb) 4598
4599
4600 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4597.307 kb on + strand, within DDA3937_RS20170 at 4597.307 kb on + strand, within DDA3937_RS20170 at 4597.307 kb on + strand, within DDA3937_RS20170 at 4597.307 kb on + strand, within DDA3937_RS20170 at 4597.307 kb on + strand at 4597.307 kb on + strand, within DDA3937_RS20170 at 4597.307 kb on + strand, within DDA3937_RS20170 at 4597.307 kb on + strand, within DDA3937_RS20170 at 4597.308 kb on - strand, within DDA3937_RS20170 at 4597.308 kb on - strand, within DDA3937_RS20170 at 4597.308 kb on - strand, within DDA3937_RS20170 at 4597.308 kb on - strand, within DDA3937_RS20170 at 4597.308 kb on - strand, within DDA3937_RS20170 at 4597.443 kb on + strand, within DDA3937_RS20170 at 4597.444 kb on - strand, within DDA3937_RS20170 at 4597.732 kb on - strand, within DDA3937_RS20170 at 4597.809 kb on - strand at 4597.821 kb on - strand at 4597.821 kb on - strand at 4597.830 kb on + strand at 4597.830 kb on + strand at 4597.831 kb on - strand at 4597.888 kb on + strand at 4597.888 kb on + strand at 4597.889 kb on - strand at 4597.889 kb on - strand at 4597.911 kb on + strand at 4597.911 kb on + strand at 4597.912 kb on - strand at 4597.912 kb on - strand at 4597.912 kb on - strand at 4597.915 kb on + strand at 4597.916 kb on - strand at 4597.929 kb on + strand at 4597.930 kb on - strand at 4597.930 kb on - strand at 4598.093 kb on - strand, within DDA3937_RS22530 at 4598.095 kb on + strand, within DDA3937_RS22530 at 4598.096 kb on - strand, within DDA3937_RS22530 at 4598.096 kb on - strand, within DDA3937_RS22530 at 4598.096 kb on - strand, within DDA3937_RS22530 at 4598.120 kb on + strand, within DDA3937_RS22530 at 4598.165 kb on - strand at 4598.169 kb on + strand at 4598.170 kb on - strand at 4598.183 kb on + strand at 4598.204 kb on - strand at 4598.278 kb on + strand at 4598.403 kb on + strand at 4598.403 kb on + strand at 4598.403 kb on + strand at 4598.403 kb on + strand at 4598.403 kb on + strand at 4598.403 kb on + strand at 4598.403 kb on + strand at 4598.403 kb on + strand at 4598.403 kb on + strand at 4598.403 kb on + strand at 4598.403 kb on + strand at 4598.404 kb on - strand at 4598.404 kb on - strand at 4598.404 kb on - strand at 4598.407 kb on + strand at 4598.407 kb on + strand at 4598.407 kb on + strand at 4598.407 kb on + strand at 4598.407 kb on + strand at 4598.408 kb on - strand at 4598.408 kb on - strand at 4598.408 kb on - strand at 4598.408 kb on - strand at 4598.561 kb on + strand, within DDA3937_RS20175 at 4598.562 kb on - strand, within DDA3937_RS20175 at 4598.562 kb on - strand, within DDA3937_RS20175 at 4598.731 kb on + strand, within DDA3937_RS20175 at 4598.732 kb on - strand, within DDA3937_RS20175 at 4598.732 kb on - strand, within DDA3937_RS20175 at 4598.732 kb on - strand, within DDA3937_RS20175 at 4598.734 kb on + strand, within DDA3937_RS20175 at 4598.735 kb on - strand, within DDA3937_RS20175 at 4598.736 kb on + strand, within DDA3937_RS20175 at 4598.736 kb on + strand, within DDA3937_RS20175 at 4598.736 kb on + strand, within DDA3937_RS20175 at 4598.736 kb on + strand, within DDA3937_RS20175 at 4598.736 kb on + strand, within DDA3937_RS20175 at 4598.736 kb on + strand, within DDA3937_RS20175 at 4598.737 kb on - strand, within DDA3937_RS20175 at 4598.737 kb on - strand, within DDA3937_RS20175 at 4598.737 kb on - strand, within DDA3937_RS20175 at 4598.737 kb on - strand, within DDA3937_RS20175 at 4598.737 kb on - strand, within DDA3937_RS20175 at 4598.740 kb on + strand, within DDA3937_RS20175 at 4598.740 kb on + strand, within DDA3937_RS20175 at 4598.740 kb on + strand, within DDA3937_RS20175 at 4598.741 kb on - strand, within DDA3937_RS20175 at 4598.741 kb on - strand, within DDA3937_RS20175 at 4598.741 kb on - strand, within DDA3937_RS20175 at 4598.741 kb on - strand, within DDA3937_RS20175 at 4598.741 kb on - strand, within DDA3937_RS20175 at 4598.750 kb on + strand, within DDA3937_RS20175 at 4598.750 kb on + strand, within DDA3937_RS20175 at 4598.750 kb on + strand, within DDA3937_RS20175 at 4598.751 kb on - strand, within DDA3937_RS20175 at 4598.751 kb on - strand, within DDA3937_RS20175 at 4598.752 kb on + strand, within DDA3937_RS20175 at 4598.753 kb on - strand, within DDA3937_RS20175 at 4598.849 kb on + strand, within DDA3937_RS20175 at 4598.850 kb on - strand, within DDA3937_RS20175 at 4598.859 kb on + strand, within DDA3937_RS20175 at 4598.961 kb on + strand at 4598.966 kb on - strand, within DDA3937_RS20175 at 4598.983 kb on + strand, within DDA3937_RS20175 at 4598.984 kb on - strand, within DDA3937_RS20175 at 4598.984 kb on - strand at 4598.984 kb on - strand, within DDA3937_RS20175 at 4598.984 kb on - strand, within DDA3937_RS20175 at 4598.984 kb on - strand, within DDA3937_RS20175 at 4599.001 kb on + strand, within DDA3937_RS20175 at 4599.002 kb on - strand, within DDA3937_RS20175 at 4599.042 kb on + strand, within DDA3937_RS20175 at 4599.048 kb on - strand, within DDA3937_RS20175 at 4599.064 kb on - strand, within DDA3937_RS20175 at 4599.091 kb on + strand, within DDA3937_RS20175 at 4599.180 kb on + strand, within DDA3937_RS20175 at 4599.208 kb on + strand, within DDA3937_RS20175 at 4599.208 kb on + strand, within DDA3937_RS20175 at 4599.208 kb on + strand, within DDA3937_RS20175 at 4599.208 kb on + strand, within DDA3937_RS20175 at 4599.209 kb on - strand, within DDA3937_RS20175 at 4599.209 kb on - strand, within DDA3937_RS20175 at 4599.209 kb on - strand, within DDA3937_RS20175 at 4599.209 kb on - strand, within DDA3937_RS20175 at 4599.212 kb on - strand, within DDA3937_RS20175 at 4599.352 kb on + strand, within DDA3937_RS20175 at 4599.353 kb on - strand, within DDA3937_RS20175 at 4599.475 kb on + strand at 4599.475 kb on + strand at 4599.475 kb on + strand at 4599.475 kb on + strand at 4599.475 kb on + strand at 4599.475 kb on + strand at 4599.475 kb on + strand at 4599.476 kb on - strand at 4599.476 kb on - strand at 4599.476 kb on - strand at 4599.476 kb on - strand at 4599.510 kb on - strand at 4599.517 kb on + strand at 4599.517 kb on + strand at 4599.517 kb on + strand at 4599.518 kb on - strand at 4599.600 kb on - strand at 4599.600 kb on - strand at 4599.608 kb on + strand at 4599.609 kb on - strand at 4599.615 kb on + strand at 4599.616 kb on - strand at 4599.619 kb on + strand at 4599.619 kb on + strand at 4599.619 kb on + strand at 4599.619 kb on + strand at 4599.620 kb on - strand at 4599.694 kb on + strand at 4599.758 kb on + strand at 4599.865 kb on + strand at 4599.866 kb on - strand at 4599.866 kb on - strand at 4599.918 kb on + strand at 4599.919 kb on - strand at 4599.932 kb on + strand at 4599.932 kb on + strand at 4599.932 kb on + strand at 4599.933 kb on - strand at 4600.088 kb on - strand, within DDA3937_RS20180 at 4600.157 kb on - strand, within DDA3937_RS20180 at 4600.305 kb on + strand, within DDA3937_RS20180 at 4600.305 kb on + strand, within DDA3937_RS20180 at 4600.305 kb on + strand, within DDA3937_RS20180 at 4600.306 kb on - strand, within DDA3937_RS20180 at 4600.380 kb on + strand, within DDA3937_RS20180 at 4600.380 kb on + strand, within DDA3937_RS20180 at 4600.381 kb on - strand, within DDA3937_RS20180 at 4600.381 kb on - strand, within DDA3937_RS20180 at 4600.381 kb on - strand, within DDA3937_RS20180 at 4600.381 kb on - strand, within DDA3937_RS20180 at 4600.383 kb on + strand, within DDA3937_RS20180 at 4600.383 kb on + strand, within DDA3937_RS20180 at 4600.383 kb on + strand, within DDA3937_RS20180 at 4600.383 kb on + strand, within DDA3937_RS20180 at 4600.384 kb on - strand, within DDA3937_RS20180 at 4600.384 kb on - strand, within DDA3937_RS20180 at 4600.384 kb on - strand, within DDA3937_RS20180 at 4600.384 kb on - strand, within DDA3937_RS20180 at 4600.384 kb on - strand, within DDA3937_RS20180 at 4600.384 kb on - strand, within DDA3937_RS20180 at 4600.405 kb on - strand, within DDA3937_RS20180 at 4600.493 kb on + strand, within DDA3937_RS20180
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,597,307 + DDA3937_RS20170 0.63 -0.0 4,597,307 + DDA3937_RS20170 0.63 -0.5 4,597,307 + DDA3937_RS20170 0.63 -0.1 4,597,307 + DDA3937_RS20170 0.63 +1.5 4,597,307 + +3.2 4,597,307 + DDA3937_RS20170 0.63 +0.8 4,597,307 + DDA3937_RS20170 0.63 -2.1 4,597,307 + DDA3937_RS20170 0.63 -0.2 4,597,308 - DDA3937_RS20170 0.63 +0.2 4,597,308 - DDA3937_RS20170 0.63 -0.8 4,597,308 - DDA3937_RS20170 0.63 -2.3 4,597,308 - DDA3937_RS20170 0.63 +0.1 4,597,308 - DDA3937_RS20170 0.63 -1.9 4,597,443 + DDA3937_RS20170 0.72 +0.4 4,597,444 - DDA3937_RS20170 0.72 -0.2 4,597,732 - DDA3937_RS20170 0.89 -0.8 4,597,809 - +0.2 4,597,821 - +0.1 4,597,821 - -0.4 4,597,830 + -0.3 4,597,830 + -0.3 4,597,831 - +2.2 4,597,888 + +0.7 4,597,888 + -0.2 4,597,889 - -1.3 4,597,889 - +0.7 4,597,911 + +0.2 4,597,911 + +0.6 4,597,912 - -0.8 4,597,912 - +0.1 4,597,912 - -0.2 4,597,915 + +0.9 4,597,916 - -0.1 4,597,929 + -0.0 4,597,930 - +0.2 4,597,930 - +0.4 4,598,093 - DDA3937_RS22530 0.42 +0.3 4,598,095 + DDA3937_RS22530 0.44 +0.4 4,598,096 - DDA3937_RS22530 0.45 -0.3 4,598,096 - DDA3937_RS22530 0.45 -0.5 4,598,096 - DDA3937_RS22530 0.45 +0.7 4,598,120 + DDA3937_RS22530 0.70 -0.3 4,598,165 - +0.7 4,598,169 + +0.4 4,598,170 - -0.1 4,598,183 + +0.1 4,598,204 - -1.9 4,598,278 + +0.5 4,598,403 + -0.3 4,598,403 + +0.1 4,598,403 + +0.7 4,598,403 + -0.1 4,598,403 + +1.2 4,598,403 + -0.2 4,598,403 + +1.0 4,598,403 + +1.0 4,598,403 + +0.2 4,598,403 + +0.7 4,598,403 + +0.9 4,598,404 - +0.3 4,598,404 - -0.5 4,598,404 - -0.7 4,598,407 + -0.3 4,598,407 + +0.2 4,598,407 + +0.1 4,598,407 + -1.2 4,598,407 + +0.2 4,598,408 - -0.2 4,598,408 - -0.3 4,598,408 - +1.9 4,598,408 - -0.9 4,598,561 + DDA3937_RS20175 0.22 -0.2 4,598,562 - DDA3937_RS20175 0.23 -0.6 4,598,562 - DDA3937_RS20175 0.23 -0.5 4,598,731 + DDA3937_RS20175 0.36 -1.0 4,598,732 - DDA3937_RS20175 0.37 +0.7 4,598,732 - DDA3937_RS20175 0.37 +0.1 4,598,732 - DDA3937_RS20175 0.37 -0.5 4,598,734 + DDA3937_RS20175 0.37 +0.2 4,598,735 - DDA3937_RS20175 0.37 -0.2 4,598,736 + DDA3937_RS20175 0.37 -0.3 4,598,736 + DDA3937_RS20175 0.37 -1.0 4,598,736 + DDA3937_RS20175 0.37 +0.2 4,598,736 + DDA3937_RS20175 0.37 +0.1 4,598,736 + DDA3937_RS20175 0.37 +1.7 4,598,736 + DDA3937_RS20175 0.37 -0.9 4,598,737 - DDA3937_RS20175 0.37 -1.2 4,598,737 - DDA3937_RS20175 0.37 +0.4 4,598,737 - DDA3937_RS20175 0.37 +0.0 4,598,737 - DDA3937_RS20175 0.37 +0.7 4,598,737 - DDA3937_RS20175 0.37 -1.2 4,598,740 + DDA3937_RS20175 0.37 +0.8 4,598,740 + DDA3937_RS20175 0.37 +0.1 4,598,740 + DDA3937_RS20175 0.37 +0.3 4,598,741 - DDA3937_RS20175 0.37 -2.2 4,598,741 - DDA3937_RS20175 0.37 +0.3 4,598,741 - DDA3937_RS20175 0.37 -0.5 4,598,741 - DDA3937_RS20175 0.37 -0.7 4,598,741 - DDA3937_RS20175 0.37 -0.7 4,598,750 + DDA3937_RS20175 0.38 +0.2 4,598,750 + DDA3937_RS20175 0.38 -0.3 4,598,750 + DDA3937_RS20175 0.38 -0.7 4,598,751 - DDA3937_RS20175 0.38 +0.3 4,598,751 - DDA3937_RS20175 0.38 -0.6 4,598,752 + DDA3937_RS20175 0.38 -2.9 4,598,753 - DDA3937_RS20175 0.38 -1.3 4,598,849 + DDA3937_RS20175 0.46 +0.0 4,598,850 - DDA3937_RS20175 0.46 -2.3 4,598,859 + DDA3937_RS20175 0.47 -0.4 4,598,961 + +0.7 4,598,966 - DDA3937_RS20175 0.56 +0.7 4,598,983 + DDA3937_RS20175 0.57 -1.0 4,598,984 - DDA3937_RS20175 0.57 +0.4 4,598,984 - +0.7 4,598,984 - DDA3937_RS20175 0.57 -0.3 4,598,984 - DDA3937_RS20175 0.57 -0.3 4,598,984 - DDA3937_RS20175 0.57 -0.3 4,599,001 + DDA3937_RS20175 0.59 -2.2 4,599,002 - DDA3937_RS20175 0.59 -0.4 4,599,042 + DDA3937_RS20175 0.62 -1.3 4,599,048 - DDA3937_RS20175 0.63 -0.5 4,599,064 - DDA3937_RS20175 0.64 +0.2 4,599,091 + DDA3937_RS20175 0.66 +0.5 4,599,180 + DDA3937_RS20175 0.73 +0.0 4,599,208 + DDA3937_RS20175 0.76 +0.7 4,599,208 + DDA3937_RS20175 0.76 +0.3 4,599,208 + DDA3937_RS20175 0.76 -0.2 4,599,208 + DDA3937_RS20175 0.76 +1.8 4,599,209 - DDA3937_RS20175 0.76 +0.0 4,599,209 - DDA3937_RS20175 0.76 -1.3 4,599,209 - DDA3937_RS20175 0.76 +0.2 4,599,209 - DDA3937_RS20175 0.76 -0.7 4,599,212 - DDA3937_RS20175 0.76 -2.2 4,599,352 + DDA3937_RS20175 0.88 -0.9 4,599,353 - DDA3937_RS20175 0.88 -0.8 4,599,475 + -0.7 4,599,475 + -0.6 4,599,475 + -1.1 4,599,475 + +0.7 4,599,475 + +0.1 4,599,475 + +0.4 4,599,475 + +0.0 4,599,476 - +0.3 4,599,476 - +1.7 4,599,476 - +0.4 4,599,476 - +0.2 4,599,510 - +1.2 4,599,517 + -0.4 4,599,517 + +0.1 4,599,517 + +0.2 4,599,518 - -2.2 4,599,600 - +0.1 4,599,600 - +1.3 4,599,608 + -1.0 4,599,609 - +0.4 4,599,615 + +0.6 4,599,616 - -0.5 4,599,619 + +0.2 4,599,619 + -0.9 4,599,619 + +0.3 4,599,619 + +0.1 4,599,620 - -0.5 4,599,694 + -0.5 4,599,758 + +0.7 4,599,865 + -0.1 4,599,866 - -1.3 4,599,866 - +0.7 4,599,918 + -0.7 4,599,919 - -0.2 4,599,932 + +0.1 4,599,932 + +0.2 4,599,932 + -0.2 4,599,933 - -0.2 4,600,088 - DDA3937_RS20180 0.16 +0.2 4,600,157 - DDA3937_RS20180 0.20 -1.0 4,600,305 + DDA3937_RS20180 0.30 -0.6 4,600,305 + DDA3937_RS20180 0.30 +0.2 4,600,305 + DDA3937_RS20180 0.30 -0.0 4,600,306 - DDA3937_RS20180 0.30 -0.7 4,600,380 + DDA3937_RS20180 0.35 +0.4 4,600,380 + DDA3937_RS20180 0.35 +1.1 4,600,381 - DDA3937_RS20180 0.35 +0.4 4,600,381 - DDA3937_RS20180 0.35 +0.5 4,600,381 - DDA3937_RS20180 0.35 -0.9 4,600,381 - DDA3937_RS20180 0.35 +0.8 4,600,383 + DDA3937_RS20180 0.35 -0.1 4,600,383 + DDA3937_RS20180 0.35 +0.3 4,600,383 + DDA3937_RS20180 0.35 -0.1 4,600,383 + DDA3937_RS20180 0.35 -0.9 4,600,384 - DDA3937_RS20180 0.35 +0.4 4,600,384 - DDA3937_RS20180 0.35 +0.2 4,600,384 - DDA3937_RS20180 0.35 -1.9 4,600,384 - DDA3937_RS20180 0.35 +0.1 4,600,384 - DDA3937_RS20180 0.35 +0.2 4,600,384 - DDA3937_RS20180 0.35 +0.1 4,600,405 - DDA3937_RS20180 0.37 +0.0 4,600,493 + DDA3937_RS20180 0.42 +0.6
Or see this region's nucleotide sequence