Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS19700

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
4,482,911	+		DDA3937_RS19695	0.55	-0.4
4,482,912	-		DDA3937_RS19695	0.55	+0.3
4,482,956	+		DDA3937_RS19695	0.58	+0.4
4,482,956	+		DDA3937_RS19695	0.58	-0.4
4,482,957	-		DDA3937_RS19695	0.58	+1.0
4,482,969	+		DDA3937_RS19695	0.59	-0.2
4,482,970	-		DDA3937_RS19695	0.59	+0.6
4,483,229	-		DDA3937_RS19695	0.79	-0.8
4,483,240	-		DDA3937_RS19695	0.80	-0.4
4,483,522	+				+0.1
4,483,522	+				-0.7
4,483,522	+				-0.2
4,483,540	-				+0.3
4,483,540	-				+0.3
4,483,542	-				-0.5
4,483,542	-				+0.0
4,483,548	+				-0.2
4,483,548	+				+0.6
4,483,558	+				+0.6
4,483,666	+				+0.7
4,483,666	+				-0.6
4,483,666	+				+0.6
4,483,666	+				+0.5
4,483,681	-				+0.2
4,483,770	+				+0.3
4,483,774	+				+0.6
4,483,775	-				+1.4
4,483,786	+				+1.5
4,483,934	-		DDA3937_RS19700	0.13	-1.3
4,484,092	-		DDA3937_RS19700	0.36	+0.4
4,484,147	-		DDA3937_RS19700	0.44	-1.0
4,484,167	+		DDA3937_RS19700	0.47	+1.2
4,484,330	-		DDA3937_RS19700	0.70	+0.6
4,484,441	+		DDA3937_RS19700	0.86	+1.6
4,484,442	-		DDA3937_RS19700	0.87	-0.7
4,484,473	+				+1.6
4,484,553	+				-0.4
4,484,553	+				-0.5
4,484,553	+				-0.1
4,484,554	-				+0.9
4,484,554	-				+1.1
4,484,562	+				+0.6
4,484,562	+				+1.4
4,484,562	+				-0.8
4,484,563	-				+0.4
4,484,563	-				-0.4
4,484,570	+				+0.0
4,484,571	-				+0.1
4,484,628	+				-0.1
4,484,628	+				+0.1
4,484,629	-				+0.1
4,484,642	+		DDA3937_RS19705	0.10	+0.6
4,484,642	+		DDA3937_RS19705	0.10	-2.4
4,484,642	+		DDA3937_RS19705	0.10	-2.0
4,484,643	-		DDA3937_RS19705	0.10	-0.8
4,484,802	+		DDA3937_RS19705	0.31	-1.2
4,484,802	+		DDA3937_RS19705	0.31	+0.1
4,484,803	-		DDA3937_RS19705	0.31	+0.1
4,484,958	-		DDA3937_RS19705	0.52	-0.1
4,484,960	+		DDA3937_RS19705	0.52	-0.3
4,484,961	-		DDA3937_RS19705	0.52	+0.0
4,484,992	+		DDA3937_RS19705	0.56	-0.3
4,485,055	-		DDA3937_RS19705	0.65	-1.0
4,485,055	-		DDA3937_RS19705	0.65	-0.8
4,485,060	+		DDA3937_RS19705	0.65	+0.7
4,485,176	+		DDA3937_RS19705	0.81	+0.7
4,485,248	+				-0.2
4,485,261	-				+0.3
4,485,302	+				-0.5
4,485,303	-				+0.1
4,485,303	-				+0.6
4,485,303	-				-1.0
4,485,303	-				-0.4
4,485,304	+				-0.6
4,485,305	-				+0.4
4,485,321	+				+1.1
4,485,326	+				-0.6
4,485,339	+				-0.2
4,485,459	+				+0.6
4,485,463	+				-0.4
4,485,463	+				+1.0
4,485,463	+				-0.1
4,485,464	-				-0.5
4,485,464	-				-1.8
4,485,464	-				+0.0
4,485,464	-				+0.6
4,485,464	-				+0.0
4,485,464	-				+0.1
4,485,464	-				-0.3
4,485,464	-				+0.9
4,485,464	-				+1.4
4,485,465	+				-0.7
4,485,465	+				-1.2
4,485,466	-				+0.8
4,485,466	-				-0.8
4,485,466	-				+0.2
4,485,466	-				-0.2
4,485,467	+				+0.3
4,485,467	+				-0.4
4,485,468	-				+0.0
4,485,468	-				-0.4
4,485,468	-				+0.5
4,485,468	-				-0.4
4,485,523	-		DDA3937_RS19710	0.20	+0.4
4,485,532	+		DDA3937_RS19710	0.23	+0.0
4,485,532	+		DDA3937_RS19710	0.23	+0.1
4,485,533	-		DDA3937_RS19710	0.24	-0.2
4,485,533	-		DDA3937_RS19710	0.24	-1.4
4,485,533	-		DDA3937_RS19710	0.24	+1.0