Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS19665 and DDA3937_RS19670 are separated by 44 nucleotides DDA3937_RS19670 and DDA3937_RS19675 are separated by 157 nucleotides DDA3937_RS19675 and DDA3937_RS19680 are separated by 278 nucleotides
DDA3937_RS19665: DDA3937_RS19665 - maltodextrin phosphorylase, at 4,474,936 to 4,477,353
_RS19665
DDA3937_RS19670: DDA3937_RS19670 - DeoR/GlpR family transcriptional regulator, at 4,477,398 to 4,478,156
_RS19670
DDA3937_RS19675: DDA3937_RS19675 - rhomboid family intramembrane serine protease GlpG, at 4,478,314 to 4,479,138
_RS19675
DDA3937_RS19680: DDA3937_RS19680 - ribokinase, at 4,479,417 to 4,480,628
_RS19680
Position (kb) 4478
4479
4480 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4477.416 kb on + strand at 4477.416 kb on + strand at 4477.417 kb on - strand at 4477.417 kb on - strand at 4477.417 kb on - strand at 4477.417 kb on - strand at 4477.417 kb on - strand at 4477.417 kb on - strand at 4477.417 kb on - strand at 4477.417 kb on - strand at 4477.417 kb on - strand at 4477.421 kb on + strand at 4477.421 kb on + strand at 4477.421 kb on + strand at 4477.421 kb on + strand at 4477.421 kb on + strand at 4477.421 kb on + strand at 4477.421 kb on + strand at 4477.421 kb on + strand at 4477.421 kb on + strand at 4477.421 kb on + strand at 4477.421 kb on + strand at 4477.422 kb on - strand at 4477.422 kb on - strand at 4477.422 kb on - strand at 4477.422 kb on - strand at 4477.422 kb on - strand at 4477.422 kb on - strand at 4477.459 kb on - strand at 4477.512 kb on - strand, within DDA3937_RS19670 at 4477.591 kb on - strand, within DDA3937_RS19670 at 4477.634 kb on + strand, within DDA3937_RS19670 at 4477.869 kb on - strand, within DDA3937_RS19670 at 4478.015 kb on + strand at 4478.015 kb on + strand, within DDA3937_RS19670 at 4478.015 kb on + strand, within DDA3937_RS19670 at 4478.015 kb on + strand, within DDA3937_RS19670 at 4478.016 kb on - strand, within DDA3937_RS19670 at 4478.016 kb on - strand, within DDA3937_RS19670 at 4478.257 kb on + strand at 4478.304 kb on + strand at 4478.304 kb on + strand at 4478.304 kb on + strand at 4478.335 kb on - strand at 4478.417 kb on + strand, within DDA3937_RS19675 at 4478.418 kb on - strand, within DDA3937_RS19675 at 4478.434 kb on + strand, within DDA3937_RS19675 at 4478.435 kb on - strand, within DDA3937_RS19675 at 4478.510 kb on + strand, within DDA3937_RS19675 at 4478.510 kb on + strand, within DDA3937_RS19675 at 4478.510 kb on + strand, within DDA3937_RS19675 at 4478.510 kb on + strand, within DDA3937_RS19675 at 4478.511 kb on - strand, within DDA3937_RS19675 at 4478.526 kb on - strand, within DDA3937_RS19675 at 4478.552 kb on + strand, within DDA3937_RS19675 at 4478.552 kb on + strand, within DDA3937_RS19675 at 4478.603 kb on - strand, within DDA3937_RS19675 at 4478.660 kb on + strand, within DDA3937_RS19675 at 4478.814 kb on - strand, within DDA3937_RS19675 at 4478.882 kb on + strand, within DDA3937_RS19675 at 4479.027 kb on + strand, within DDA3937_RS19675 at 4479.081 kb on + strand at 4479.081 kb on + strand at 4479.081 kb on + strand at 4479.081 kb on + strand at 4479.081 kb on + strand at 4479.081 kb on + strand at 4479.081 kb on + strand at 4479.081 kb on + strand at 4479.081 kb on + strand at 4479.081 kb on + strand at 4479.081 kb on + strand at 4479.081 kb on + strand at 4479.082 kb on - strand at 4479.082 kb on - strand at 4479.082 kb on - strand at 4479.082 kb on - strand at 4479.082 kb on - strand at 4479.083 kb on + strand at 4479.083 kb on + strand at 4479.083 kb on + strand at 4479.084 kb on - strand at 4479.084 kb on - strand at 4479.171 kb on + strand at 4479.171 kb on + strand at 4479.171 kb on + strand at 4479.171 kb on + strand at 4479.172 kb on - strand at 4479.172 kb on - strand at 4479.194 kb on + strand at 4479.194 kb on + strand at 4479.226 kb on + strand at 4479.237 kb on - strand at 4479.331 kb on - strand at 4479.353 kb on + strand at 4479.354 kb on - strand at 4479.390 kb on + strand at 4479.390 kb on + strand at 4479.390 kb on + strand at 4479.390 kb on + strand at 4479.391 kb on - strand at 4479.391 kb on - strand at 4479.410 kb on + strand at 4479.411 kb on - strand at 4479.416 kb on + strand at 4479.416 kb on + strand at 4479.416 kb on + strand at 4479.417 kb on - strand at 4479.417 kb on - strand at 4479.453 kb on + strand at 4479.465 kb on + strand at 4479.466 kb on - strand at 4479.466 kb on - strand at 4479.487 kb on - strand at 4479.523 kb on + strand at 4479.523 kb on + strand at 4479.523 kb on + strand at 4479.523 kb on + strand at 4479.524 kb on - strand at 4479.674 kb on - strand, within DDA3937_RS19680 at 4479.702 kb on - strand, within DDA3937_RS19680 at 4479.749 kb on + strand, within DDA3937_RS19680 at 4479.750 kb on - strand, within DDA3937_RS19680 at 4479.750 kb on - strand, within DDA3937_RS19680 at 4479.750 kb on - strand, within DDA3937_RS19680 at 4479.956 kb on + strand, within DDA3937_RS19680 at 4479.961 kb on + strand, within DDA3937_RS19680 at 4479.962 kb on - strand, within DDA3937_RS19680 at 4479.962 kb on - strand, within DDA3937_RS19680 at 4479.962 kb on - strand, within DDA3937_RS19680 at 4479.962 kb on - strand, within DDA3937_RS19680 at 4479.963 kb on + strand, within DDA3937_RS19680 at 4479.998 kb on + strand, within DDA3937_RS19680 at 4479.999 kb on - strand, within DDA3937_RS19680 at 4479.999 kb on - strand, within DDA3937_RS19680 at 4480.002 kb on + strand, within DDA3937_RS19680 at 4480.002 kb on + strand at 4480.002 kb on + strand, within DDA3937_RS19680 at 4480.003 kb on - strand, within DDA3937_RS19680 at 4480.003 kb on - strand, within DDA3937_RS19680 at 4480.003 kb on - strand, within DDA3937_RS19680 at 4480.042 kb on - strand, within DDA3937_RS19680 at 4480.089 kb on - strand, within DDA3937_RS19680 at 4480.114 kb on + strand, within DDA3937_RS19680 at 4480.115 kb on - strand, within DDA3937_RS19680 at 4480.136 kb on + strand, within DDA3937_RS19680
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,477,416 + +2.4 4,477,416 + -0.6 4,477,417 - +0.3 4,477,417 - +0.9 4,477,417 - +0.8 4,477,417 - +0.6 4,477,417 - +0.9 4,477,417 - +0.6 4,477,417 - +1.7 4,477,417 - +0.9 4,477,417 - +0.5 4,477,421 + +1.4 4,477,421 + -0.2 4,477,421 + +0.9 4,477,421 + -0.5 4,477,421 + +0.8 4,477,421 + +1.6 4,477,421 + +1.6 4,477,421 + +1.0 4,477,421 + +1.2 4,477,421 + +0.8 4,477,421 + +1.0 4,477,422 - +2.1 4,477,422 - +0.9 4,477,422 - +0.7 4,477,422 - +0.8 4,477,422 - -0.0 4,477,422 - -1.7 4,477,459 - -0.1 4,477,512 - DDA3937_RS19670 0.15 +0.1 4,477,591 - DDA3937_RS19670 0.25 +1.3 4,477,634 + DDA3937_RS19670 0.31 -0.1 4,477,869 - DDA3937_RS19670 0.62 +3.4 4,478,015 + +0.6 4,478,015 + DDA3937_RS19670 0.81 +0.7 4,478,015 + DDA3937_RS19670 0.81 -0.4 4,478,015 + DDA3937_RS19670 0.81 -0.1 4,478,016 - DDA3937_RS19670 0.81 +0.2 4,478,016 - DDA3937_RS19670 0.81 -1.0 4,478,257 + -1.7 4,478,304 + +0.0 4,478,304 + +0.6 4,478,304 + -0.2 4,478,335 - +0.0 4,478,417 + DDA3937_RS19675 0.12 +0.3 4,478,418 - DDA3937_RS19675 0.13 +1.0 4,478,434 + DDA3937_RS19675 0.15 +0.8 4,478,435 - DDA3937_RS19675 0.15 +0.6 4,478,510 + DDA3937_RS19675 0.24 +0.0 4,478,510 + DDA3937_RS19675 0.24 +1.1 4,478,510 + DDA3937_RS19675 0.24 +0.1 4,478,510 + DDA3937_RS19675 0.24 +1.7 4,478,511 - DDA3937_RS19675 0.24 -1.2 4,478,526 - DDA3937_RS19675 0.26 -1.4 4,478,552 + DDA3937_RS19675 0.29 -0.8 4,478,552 + DDA3937_RS19675 0.29 +0.7 4,478,603 - DDA3937_RS19675 0.35 -2.5 4,478,660 + DDA3937_RS19675 0.42 +0.1 4,478,814 - DDA3937_RS19675 0.61 +0.2 4,478,882 + DDA3937_RS19675 0.69 -0.2 4,479,027 + DDA3937_RS19675 0.86 -1.4 4,479,081 + +0.0 4,479,081 + -0.4 4,479,081 + +0.9 4,479,081 + -0.1 4,479,081 + +0.3 4,479,081 + -0.1 4,479,081 + -0.1 4,479,081 + +0.5 4,479,081 + +0.2 4,479,081 + -0.1 4,479,081 + -0.2 4,479,081 + +1.2 4,479,082 - +0.6 4,479,082 - +0.3 4,479,082 - +0.2 4,479,082 - +2.0 4,479,082 - +0.3 4,479,083 + +1.9 4,479,083 + -0.1 4,479,083 + -0.1 4,479,084 - +0.7 4,479,084 - -0.8 4,479,171 + +0.2 4,479,171 + +0.6 4,479,171 + -0.0 4,479,171 + -1.5 4,479,172 - +0.2 4,479,172 - -0.0 4,479,194 + -0.3 4,479,194 + -0.2 4,479,226 + -1.0 4,479,237 - +1.5 4,479,331 - -1.0 4,479,353 + +0.8 4,479,354 - +0.1 4,479,390 + -0.2 4,479,390 + +0.3 4,479,390 + +0.0 4,479,390 + -0.3 4,479,391 - -1.0 4,479,391 - -0.0 4,479,410 + -0.4 4,479,411 - -0.2 4,479,416 + -0.5 4,479,416 + +0.4 4,479,416 + +0.1 4,479,417 - +0.0 4,479,417 - -0.5 4,479,453 + +0.1 4,479,465 + -0.3 4,479,466 - +1.5 4,479,466 - +0.4 4,479,487 - -0.2 4,479,523 + +0.1 4,479,523 + +0.1 4,479,523 + -1.1 4,479,523 + -0.4 4,479,524 - -0.1 4,479,674 - DDA3937_RS19680 0.21 -2.0 4,479,702 - DDA3937_RS19680 0.24 -3.2 4,479,749 + DDA3937_RS19680 0.27 -0.4 4,479,750 - DDA3937_RS19680 0.27 -0.4 4,479,750 - DDA3937_RS19680 0.27 -0.5 4,479,750 - DDA3937_RS19680 0.27 -0.4 4,479,956 + DDA3937_RS19680 0.44 +0.3 4,479,961 + DDA3937_RS19680 0.45 -0.1 4,479,962 - DDA3937_RS19680 0.45 -0.7 4,479,962 - DDA3937_RS19680 0.45 +0.0 4,479,962 - DDA3937_RS19680 0.45 -0.4 4,479,962 - DDA3937_RS19680 0.45 +0.6 4,479,963 + DDA3937_RS19680 0.45 -0.4 4,479,998 + DDA3937_RS19680 0.48 +0.1 4,479,999 - DDA3937_RS19680 0.48 -1.3 4,479,999 - DDA3937_RS19680 0.48 +0.9 4,480,002 + DDA3937_RS19680 0.48 -1.8 4,480,002 + -0.4 4,480,002 + DDA3937_RS19680 0.48 +1.4 4,480,003 - DDA3937_RS19680 0.48 -1.6 4,480,003 - DDA3937_RS19680 0.48 +1.2 4,480,003 - DDA3937_RS19680 0.48 -0.5 4,480,042 - DDA3937_RS19680 0.52 +0.1 4,480,089 - DDA3937_RS19680 0.55 -0.0 4,480,114 + DDA3937_RS19680 0.58 -0.2 4,480,115 - DDA3937_RS19680 0.58 -0.2 4,480,136 + DDA3937_RS19680 0.59 -0.8
Or see this region's nucleotide sequence