Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS19595 and DDA3937_RS19600 overlap by 4 nucleotides DDA3937_RS19600 and DDA3937_RS19605 are separated by 239 nucleotides DDA3937_RS19605 and DDA3937_RS19610 are separated by 761 nucleotides
DDA3937_RS19595: DDA3937_RS19595 - GMP/IMP nucleotidase, at 4,457,293 to 4,457,997
_RS19595
DDA3937_RS19600: DDA3937_RS19600 - ribosome-associated heat shock protein Hsp15, at 4,457,994 to 4,458,407
_RS19600
DDA3937_RS19605: DDA3937_RS19605 - Hsp33 family molecular chaperone HslO, at 4,458,647 to 4,459,519
_RS19605
DDA3937_RS19610: DDA3937_RS19610 - phosphoenolpyruvate carboxykinase (ATP), at 4,460,281 to 4,461,900
_RS19610
Position (kb) 4458
4459
4460 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4457.672 kb on + strand, within DDA3937_RS19595 at 4457.672 kb on + strand, within DDA3937_RS19595 at 4457.672 kb on + strand, within DDA3937_RS19595 at 4457.673 kb on - strand, within DDA3937_RS19595 at 4457.673 kb on - strand, within DDA3937_RS19595 at 4457.673 kb on - strand, within DDA3937_RS19595 at 4457.673 kb on - strand, within DDA3937_RS19595 at 4457.705 kb on + strand, within DDA3937_RS19595 at 4457.705 kb on + strand, within DDA3937_RS19595 at 4457.706 kb on - strand at 4457.709 kb on - strand, within DDA3937_RS19595 at 4457.721 kb on + strand, within DDA3937_RS19595 at 4457.721 kb on + strand, within DDA3937_RS19595 at 4457.721 kb on + strand, within DDA3937_RS19595 at 4457.722 kb on - strand, within DDA3937_RS19595 at 4457.722 kb on - strand, within DDA3937_RS19595 at 4457.725 kb on + strand, within DDA3937_RS19595 at 4457.725 kb on + strand, within DDA3937_RS19595 at 4457.726 kb on - strand, within DDA3937_RS19595 at 4457.753 kb on + strand, within DDA3937_RS19595 at 4457.797 kb on - strand, within DDA3937_RS19595 at 4457.857 kb on + strand, within DDA3937_RS19595 at 4457.857 kb on + strand, within DDA3937_RS19595 at 4457.874 kb on + strand, within DDA3937_RS19595 at 4457.874 kb on + strand, within DDA3937_RS19595 at 4457.875 kb on - strand, within DDA3937_RS19595 at 4457.935 kb on + strand at 4457.935 kb on + strand at 4457.935 kb on + strand at 4457.936 kb on - strand at 4458.117 kb on + strand, within DDA3937_RS19600 at 4458.117 kb on + strand, within DDA3937_RS19600 at 4458.118 kb on - strand, within DDA3937_RS19600 at 4458.118 kb on - strand, within DDA3937_RS19600 at 4458.118 kb on - strand, within DDA3937_RS19600 at 4458.118 kb on - strand, within DDA3937_RS19600 at 4458.119 kb on + strand, within DDA3937_RS19600 at 4458.120 kb on - strand, within DDA3937_RS19600 at 4458.152 kb on - strand, within DDA3937_RS19600 at 4458.258 kb on + strand, within DDA3937_RS19600 at 4458.259 kb on - strand, within DDA3937_RS19600 at 4458.259 kb on - strand, within DDA3937_RS19600 at 4458.259 kb on - strand, within DDA3937_RS19600 at 4458.376 kb on + strand at 4458.377 kb on - strand at 4458.387 kb on - strand at 4458.391 kb on - strand at 4458.391 kb on - strand at 4458.391 kb on - strand at 4458.405 kb on + strand at 4458.405 kb on + strand at 4458.406 kb on - strand at 4458.406 kb on - strand at 4458.406 kb on - strand at 4458.406 kb on - strand at 4458.427 kb on + strand at 4458.427 kb on + strand at 4458.427 kb on + strand at 4458.427 kb on + strand at 4458.427 kb on + strand at 4458.428 kb on - strand at 4458.428 kb on - strand at 4458.428 kb on - strand at 4458.428 kb on - strand at 4458.428 kb on - strand at 4458.542 kb on + strand at 4458.543 kb on - strand at 4458.543 kb on - strand at 4458.543 kb on - strand at 4458.543 kb on - strand at 4458.543 kb on - strand at 4458.593 kb on + strand at 4458.593 kb on + strand at 4458.598 kb on + strand at 4458.646 kb on + strand at 4458.675 kb on - strand at 4458.756 kb on - strand, within DDA3937_RS19605 at 4459.073 kb on + strand, within DDA3937_RS19605 at 4459.283 kb on + strand, within DDA3937_RS19605 at 4459.283 kb on + strand, within DDA3937_RS19605 at 4459.284 kb on - strand, within DDA3937_RS19605 at 4459.284 kb on - strand, within DDA3937_RS19605 at 4459.284 kb on - strand, within DDA3937_RS19605 at 4459.307 kb on + strand, within DDA3937_RS19605 at 4459.308 kb on - strand, within DDA3937_RS19605 at 4459.308 kb on - strand, within DDA3937_RS19605 at 4459.439 kb on + strand at 4459.439 kb on + strand at 4459.440 kb on - strand at 4459.454 kb on + strand at 4459.455 kb on - strand at 4459.455 kb on - strand at 4459.530 kb on + strand at 4459.605 kb on + strand at 4459.605 kb on + strand at 4459.605 kb on + strand at 4459.613 kb on + strand at 4459.613 kb on + strand at 4459.636 kb on - strand at 4459.720 kb on + strand at 4459.721 kb on - strand at 4459.850 kb on - strand at 4459.888 kb on + strand at 4460.024 kb on + strand at 4460.024 kb on + strand at 4460.025 kb on + strand at 4460.026 kb on + strand at 4460.026 kb on + strand at 4460.026 kb on + strand at 4460.026 kb on + strand at 4460.123 kb on - strand at 4460.123 kb on - strand at 4460.123 kb on - strand at 4460.167 kb on + strand at 4460.167 kb on + strand at 4460.167 kb on + strand at 4460.168 kb on - strand at 4460.168 kb on - strand at 4460.168 kb on - strand at 4460.192 kb on - strand at 4460.220 kb on - strand at 4460.225 kb on - strand at 4460.225 kb on - strand at 4460.243 kb on + strand at 4460.243 kb on + strand at 4460.243 kb on + strand at 4460.243 kb on + strand at 4460.244 kb on - strand at 4460.244 kb on - strand at 4460.244 kb on - strand at 4460.244 kb on - strand at 4460.244 kb on - strand at 4460.246 kb on + strand at 4460.246 kb on + strand at 4460.247 kb on - strand at 4460.247 kb on - strand at 4460.253 kb on - strand at 4460.253 kb on - strand at 4460.253 kb on - strand at 4460.258 kb on + strand at 4460.259 kb on - strand at 4460.259 kb on - strand at 4460.260 kb on + strand at 4460.261 kb on - strand at 4460.268 kb on + strand at 4460.268 kb on + strand at 4460.269 kb on - strand at 4460.274 kb on + strand at 4460.274 kb on + strand at 4460.274 kb on + strand at 4460.274 kb on + strand at 4460.274 kb on + strand at 4460.288 kb on + strand at 4460.288 kb on + strand at 4460.288 kb on + strand at 4460.288 kb on + strand at 4460.288 kb on + strand at 4460.288 kb on + strand at 4460.289 kb on - strand at 4460.289 kb on - strand at 4460.289 kb on - strand at 4460.298 kb on + strand at 4460.298 kb on + strand at 4460.320 kb on + strand at 4460.320 kb on + strand at 4460.321 kb on - strand at 4460.321 kb on - strand at 4460.321 kb on - strand at 4460.350 kb on + strand at 4460.350 kb on + strand at 4460.351 kb on - strand at 4460.369 kb on + strand at 4460.369 kb on + strand at 4460.399 kb on + strand at 4460.399 kb on + strand at 4460.399 kb on + strand at 4460.400 kb on - strand at 4460.400 kb on - strand at 4460.407 kb on + strand at 4460.407 kb on + strand at 4460.408 kb on - strand at 4460.484 kb on + strand, within DDA3937_RS19610 at 4460.484 kb on + strand, within DDA3937_RS19610 at 4460.484 kb on + strand, within DDA3937_RS19610 at 4460.484 kb on + strand, within DDA3937_RS19610 at 4460.484 kb on + strand, within DDA3937_RS19610 at 4460.484 kb on + strand, within DDA3937_RS19610 at 4460.485 kb on - strand, within DDA3937_RS19610 at 4460.485 kb on - strand, within DDA3937_RS19610 at 4460.485 kb on - strand, within DDA3937_RS19610 at 4460.485 kb on - strand, within DDA3937_RS19610 at 4460.485 kb on - strand, within DDA3937_RS19610 at 4460.488 kb on + strand, within DDA3937_RS19610 at 4460.488 kb on + strand, within DDA3937_RS19610 at 4460.488 kb on + strand, within DDA3937_RS19610 at 4460.488 kb on + strand, within DDA3937_RS19610 at 4460.488 kb on + strand, within DDA3937_RS19610 at 4460.488 kb on + strand, within DDA3937_RS19610 at 4460.488 kb on + strand, within DDA3937_RS19610 at 4460.488 kb on + strand, within DDA3937_RS19610 at 4460.488 kb on + strand, within DDA3937_RS19610 at 4460.488 kb on + strand, within DDA3937_RS19610 at 4460.488 kb on + strand, within DDA3937_RS19610 at 4460.488 kb on + strand, within DDA3937_RS19610 at 4460.488 kb on + strand, within DDA3937_RS19610 at 4460.489 kb on - strand, within DDA3937_RS19610 at 4460.489 kb on - strand, within DDA3937_RS19610 at 4460.489 kb on - strand, within DDA3937_RS19610 at 4460.489 kb on - strand, within DDA3937_RS19610 at 4460.489 kb on - strand, within DDA3937_RS19610 at 4460.489 kb on - strand, within DDA3937_RS19610 at 4460.489 kb on - strand, within DDA3937_RS19610 at 4460.489 kb on - strand, within DDA3937_RS19610 at 4460.489 kb on - strand, within DDA3937_RS19610 at 4460.489 kb on - strand, within DDA3937_RS19610 at 4460.489 kb on - strand, within DDA3937_RS19610 at 4460.489 kb on - strand, within DDA3937_RS19610
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,457,672 + DDA3937_RS19595 0.54 -0.0 4,457,672 + DDA3937_RS19595 0.54 -2.3 4,457,672 + DDA3937_RS19595 0.54 +0.3 4,457,673 - DDA3937_RS19595 0.54 -0.3 4,457,673 - DDA3937_RS19595 0.54 +0.1 4,457,673 - DDA3937_RS19595 0.54 -0.1 4,457,673 - DDA3937_RS19595 0.54 +0.0 4,457,705 + DDA3937_RS19595 0.58 -1.6 4,457,705 + DDA3937_RS19595 0.58 +1.6 4,457,706 - +1.3 4,457,709 - DDA3937_RS19595 0.59 -0.2 4,457,721 + DDA3937_RS19595 0.61 -1.7 4,457,721 + DDA3937_RS19595 0.61 -1.7 4,457,721 + DDA3937_RS19595 0.61 -0.1 4,457,722 - DDA3937_RS19595 0.61 +0.9 4,457,722 - DDA3937_RS19595 0.61 -0.2 4,457,725 + DDA3937_RS19595 0.61 -0.6 4,457,725 + DDA3937_RS19595 0.61 -0.1 4,457,726 - DDA3937_RS19595 0.61 +0.4 4,457,753 + DDA3937_RS19595 0.65 +0.5 4,457,797 - DDA3937_RS19595 0.71 +0.0 4,457,857 + DDA3937_RS19595 0.80 -2.0 4,457,857 + DDA3937_RS19595 0.80 -0.4 4,457,874 + DDA3937_RS19595 0.82 +2.0 4,457,874 + DDA3937_RS19595 0.82 +0.2 4,457,875 - DDA3937_RS19595 0.83 -1.8 4,457,935 + -2.3 4,457,935 + -0.3 4,457,935 + -0.6 4,457,936 - -0.4 4,458,117 + DDA3937_RS19600 0.30 -1.7 4,458,117 + DDA3937_RS19600 0.30 -0.0 4,458,118 - DDA3937_RS19600 0.30 -2.6 4,458,118 - DDA3937_RS19600 0.30 +0.6 4,458,118 - DDA3937_RS19600 0.30 -0.7 4,458,118 - DDA3937_RS19600 0.30 -2.4 4,458,119 + DDA3937_RS19600 0.30 -0.0 4,458,120 - DDA3937_RS19600 0.30 +0.8 4,458,152 - DDA3937_RS19600 0.38 -0.1 4,458,258 + DDA3937_RS19600 0.64 -0.7 4,458,259 - DDA3937_RS19600 0.64 -1.1 4,458,259 - DDA3937_RS19600 0.64 +1.0 4,458,259 - DDA3937_RS19600 0.64 +0.6 4,458,376 + +0.2 4,458,377 - -0.1 4,458,387 - -0.7 4,458,391 - +0.0 4,458,391 - -1.7 4,458,391 - +1.6 4,458,405 + -0.8 4,458,405 + +0.8 4,458,406 - -0.8 4,458,406 - +0.3 4,458,406 - -0.2 4,458,406 - -0.3 4,458,427 + -0.1 4,458,427 + +0.1 4,458,427 + +0.0 4,458,427 + +0.2 4,458,427 + -0.4 4,458,428 - -0.2 4,458,428 - -0.4 4,458,428 - -1.2 4,458,428 - +0.0 4,458,428 - -0.8 4,458,542 + +0.3 4,458,543 - -0.6 4,458,543 - +0.0 4,458,543 - +0.0 4,458,543 - -0.1 4,458,543 - +0.2 4,458,593 + -2.2 4,458,593 + -0.1 4,458,598 + -0.8 4,458,646 + -3.1 4,458,675 - +0.9 4,458,756 - DDA3937_RS19605 0.12 -0.8 4,459,073 + DDA3937_RS19605 0.49 -1.4 4,459,283 + DDA3937_RS19605 0.73 -0.5 4,459,283 + DDA3937_RS19605 0.73 -1.1 4,459,284 - DDA3937_RS19605 0.73 -1.2 4,459,284 - DDA3937_RS19605 0.73 +0.6 4,459,284 - DDA3937_RS19605 0.73 +0.6 4,459,307 + DDA3937_RS19605 0.76 -2.0 4,459,308 - DDA3937_RS19605 0.76 -2.2 4,459,308 - DDA3937_RS19605 0.76 -1.4 4,459,439 + +0.4 4,459,439 + -1.2 4,459,440 - -0.8 4,459,454 + +0.3 4,459,455 - +0.6 4,459,455 - +0.2 4,459,530 + -0.2 4,459,605 + +0.9 4,459,605 + +0.9 4,459,605 + -0.0 4,459,613 + -0.4 4,459,613 + -0.1 4,459,636 - -0.6 4,459,720 + +0.0 4,459,721 - -0.2 4,459,850 - -0.7 4,459,888 + +0.3 4,460,024 + +0.7 4,460,024 + +0.6 4,460,025 + -0.1 4,460,026 + +1.6 4,460,026 + +0.5 4,460,026 + -0.8 4,460,026 + -2.2 4,460,123 - -1.0 4,460,123 - +0.8 4,460,123 - +0.2 4,460,167 + -1.4 4,460,167 + -0.4 4,460,167 + -0.1 4,460,168 - -1.3 4,460,168 - +0.3 4,460,168 - +0.6 4,460,192 - -2.0 4,460,220 - +0.2 4,460,225 - +0.6 4,460,225 - -0.1 4,460,243 + -0.3 4,460,243 + +0.2 4,460,243 + +0.2 4,460,243 + -0.8 4,460,244 - +0.6 4,460,244 - -0.0 4,460,244 - -0.4 4,460,244 - +0.8 4,460,244 - -0.3 4,460,246 + +0.1 4,460,246 + -0.1 4,460,247 - +0.2 4,460,247 - -0.2 4,460,253 - -0.2 4,460,253 - -0.4 4,460,253 - +0.3 4,460,258 + -0.4 4,460,259 - -0.0 4,460,259 - +0.1 4,460,260 + -0.0 4,460,261 - +1.7 4,460,268 + +0.5 4,460,268 + +0.0 4,460,269 - +0.0 4,460,274 + +0.0 4,460,274 + +0.5 4,460,274 + +0.3 4,460,274 + -0.9 4,460,274 + -0.7 4,460,288 + +1.1 4,460,288 + -0.1 4,460,288 + -0.2 4,460,288 + -1.0 4,460,288 + -0.5 4,460,288 + -0.6 4,460,289 - -0.4 4,460,289 - +0.5 4,460,289 - +0.9 4,460,298 + -1.2 4,460,298 + -0.8 4,460,320 + -0.5 4,460,320 + +0.1 4,460,321 - +0.4 4,460,321 - +0.7 4,460,321 - -1.7 4,460,350 + +0.3 4,460,350 + -1.0 4,460,351 - -0.1 4,460,369 + +0.1 4,460,369 + +0.1 4,460,399 + -1.6 4,460,399 + -1.3 4,460,399 + +0.4 4,460,400 - -0.1 4,460,400 - -0.9 4,460,407 + -0.1 4,460,407 + +0.8 4,460,408 - -1.1 4,460,484 + DDA3937_RS19610 0.13 +1.1 4,460,484 + DDA3937_RS19610 0.13 +1.6 4,460,484 + DDA3937_RS19610 0.13 +0.3 4,460,484 + DDA3937_RS19610 0.13 +0.1 4,460,484 + DDA3937_RS19610 0.13 -0.1 4,460,484 + DDA3937_RS19610 0.13 +0.6 4,460,485 - DDA3937_RS19610 0.13 -0.3 4,460,485 - DDA3937_RS19610 0.13 +1.1 4,460,485 - DDA3937_RS19610 0.13 +0.7 4,460,485 - DDA3937_RS19610 0.13 +0.1 4,460,485 - DDA3937_RS19610 0.13 +0.9 4,460,488 + DDA3937_RS19610 0.13 +0.2 4,460,488 + DDA3937_RS19610 0.13 +0.4 4,460,488 + DDA3937_RS19610 0.13 +0.5 4,460,488 + DDA3937_RS19610 0.13 +0.5 4,460,488 + DDA3937_RS19610 0.13 +0.6 4,460,488 + DDA3937_RS19610 0.13 -0.4 4,460,488 + DDA3937_RS19610 0.13 -0.5 4,460,488 + DDA3937_RS19610 0.13 +0.7 4,460,488 + DDA3937_RS19610 0.13 -0.6 4,460,488 + DDA3937_RS19610 0.13 -0.3 4,460,488 + DDA3937_RS19610 0.13 +0.5 4,460,488 + DDA3937_RS19610 0.13 -0.0 4,460,488 + DDA3937_RS19610 0.13 +0.9 4,460,489 - DDA3937_RS19610 0.13 -2.0 4,460,489 - DDA3937_RS19610 0.13 -0.3 4,460,489 - DDA3937_RS19610 0.13 -0.2 4,460,489 - DDA3937_RS19610 0.13 -2.0 4,460,489 - DDA3937_RS19610 0.13 +0.3 4,460,489 - DDA3937_RS19610 0.13 -0.0 4,460,489 - DDA3937_RS19610 0.13 -0.6 4,460,489 - DDA3937_RS19610 0.13 +0.2 4,460,489 - DDA3937_RS19610 0.13 +0.1 4,460,489 - DDA3937_RS19610 0.13 +0.3 4,460,489 - DDA3937_RS19610 0.13 +0.9 4,460,489 - DDA3937_RS19610 0.13 -1.7
Or see this region's nucleotide sequence