Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS19435

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
4,417,525	+		DDA3937_RS19425	0.57	+0.3
4,417,534	+		DDA3937_RS19425	0.58	+0.4
4,417,534	+		DDA3937_RS19425	0.58	-1.1
4,417,534	+		DDA3937_RS19425	0.58	-1.0
4,417,534	+		DDA3937_RS19425	0.58	-0.4
4,417,535	-		DDA3937_RS19425	0.58	+0.4
4,417,535	-		DDA3937_RS19425	0.58	-0.4
4,417,535	-		DDA3937_RS19425	0.58	-0.1
4,417,625	+		DDA3937_RS19425	0.67	+0.5
4,417,626	-		DDA3937_RS19425	0.67	+0.6
4,417,667	+		DDA3937_RS19425	0.72	-0.1
4,417,668	-		DDA3937_RS19425	0.72	-1.0
4,417,668	-				-1.0
4,417,693	+		DDA3937_RS19425	0.74	-0.1
4,417,693	+		DDA3937_RS19425	0.74	+0.3
4,417,693	+		DDA3937_RS19425	0.74	+0.1
4,417,694	-		DDA3937_RS19425	0.74	+0.0
4,417,800	+		DDA3937_RS19425	0.85	+1.6
4,417,801	-		DDA3937_RS19425	0.85	+0.6
4,417,802	+		DDA3937_RS19425	0.85	+1.5
4,417,802	+		DDA3937_RS19425	0.85	-0.3
4,417,802	+		DDA3937_RS19425	0.85	-0.4
4,417,802	+		DDA3937_RS19425	0.85	-0.4
4,417,802	+		DDA3937_RS19425	0.85	-0.5
4,417,803	-		DDA3937_RS19425	0.85	-1.5
4,417,828	+		DDA3937_RS19425	0.88	-0.3
4,417,828	+		DDA3937_RS19425	0.88	-1.1
4,417,829	-		DDA3937_RS19425	0.88	-0.3
4,417,908	+				+0.4
4,417,908	+				-0.8
4,417,909	-				-0.2
4,417,909	-				+0.4
4,417,923	+				+0.6
4,417,930	+				-1.1
4,417,931	-				-0.7
4,418,069	+		DDA3937_RS19430	0.51	+0.4
4,418,069	+		DDA3937_RS19430	0.51	+1.2
4,418,069	+		DDA3937_RS19430	0.51	-1.7
4,418,070	-		DDA3937_RS19430	0.52	-0.2
4,418,070	-		DDA3937_RS19430	0.52	-0.5
4,418,070	-		DDA3937_RS19430	0.52	+0.3
4,418,071	+		DDA3937_RS19430	0.52	-0.0
4,418,071	+		DDA3937_RS19430	0.52	-0.8
4,418,072	-		DDA3937_RS19430	0.53	-0.7
4,418,072	-		DDA3937_RS19430	0.53	+0.9
4,418,072	-		DDA3937_RS19430	0.53	-0.5
4,418,072	-		DDA3937_RS19430	0.53	+0.1
4,418,072	-		DDA3937_RS19430	0.53	-0.4
4,418,072	-		DDA3937_RS19430	0.53	+0.0
4,418,072	-		DDA3937_RS19430	0.53	+1.6
4,418,072	-		DDA3937_RS19430	0.53	-1.0
4,418,072	-		DDA3937_RS19430	0.53	+0.1
4,418,072	-		DDA3937_RS19430	0.53	-0.8
4,418,135	+		DDA3937_RS19430	0.79	+0.2
4,418,135	+		DDA3937_RS19430	0.79	-0.5
4,418,135	+		DDA3937_RS19430	0.79	+1.1
4,418,135	+		DDA3937_RS19430	0.79	+0.4
4,418,135	+		DDA3937_RS19430	0.79	-1.7
4,418,136	-		DDA3937_RS19430	0.80	+1.2
4,418,136	-		DDA3937_RS19430	0.80	+1.0
4,418,136	-		DDA3937_RS19430	0.80	-0.7
4,418,172	+				+0.0
4,418,202	+				+1.6
4,418,223	+				+0.4
4,418,224	-				-0.0
4,418,224	-				+1.5
4,418,226	-				-0.4
4,418,226	-				-0.4
4,418,226	-				+1.0
4,418,226	-				-0.8
4,418,226	-				+1.2
4,418,234	+				-0.6
4,418,241	+				-2.0
4,418,241	+				-0.3
4,418,248	+				+1.0
4,418,248	+				-0.3
4,418,248	+				-0.1
4,418,249	-				-0.6
4,418,249	-				-1.0
4,418,249	-				+1.0
4,418,439	+		DDA3937_RS19435	0.15	-1.8
4,418,439	+		DDA3937_RS19435	0.15	-2.3
4,418,439	+				-0.7
4,418,439	+		DDA3937_RS19435	0.15	+0.2
4,418,440	-		DDA3937_RS19435	0.15	-1.7
4,418,440	-		DDA3937_RS19435	0.15	-1.0
4,418,440	-				-1.4
4,418,449	-		DDA3937_RS19435	0.16	+0.9
4,418,450	+		DDA3937_RS19435	0.16	+0.4
4,418,553	-		DDA3937_RS19435	0.28	-0.1
4,418,553	-		DDA3937_RS19435	0.28	-0.9
4,418,553	-				+0.6
4,418,566	-		DDA3937_RS19435	0.29	+1.0
4,418,610	+		DDA3937_RS19435	0.34	-1.0
4,418,610	+		DDA3937_RS19435	0.34	-0.4
4,418,611	-		DDA3937_RS19435	0.35	-1.1
4,418,611	-		DDA3937_RS19435	0.35	+0.0
4,418,629	-		DDA3937_RS19435	0.37	-2.6
4,418,695	-		DDA3937_RS19435	0.44	-1.6
4,418,695	-		DDA3937_RS19435	0.44	-1.0
4,418,877	+		DDA3937_RS19435	0.65	+0.6
4,418,877	+		DDA3937_RS19435	0.65	-2.2
4,418,878	-				+1.2
4,418,878	-		DDA3937_RS19435	0.65	+0.3
4,418,878	-		DDA3937_RS19435	0.65	-2.0
4,419,039	+		DDA3937_RS19435	0.84	-1.0
4,419,040	-		DDA3937_RS19435	0.84	-0.2
4,419,155	-				-0.3
4,419,157	+				+1.6
4,419,157	+				-0.4
4,419,157	+				-1.4
4,419,158	-				+0.3
4,419,158	-				+0.3
4,419,158	-				+1.5
4,419,171	-				+0.4
4,419,171	-				+1.1
4,419,177	+				-1.2
4,419,177	+				+0.7
4,419,178	-				-0.5
4,419,298	+		DDA3937_RS19440	0.18	+1.1
4,419,451	+		DDA3937_RS19440	0.55	-1.5
4,419,451	+		DDA3937_RS19440	0.55	+1.0
4,419,470	+		DDA3937_RS19440	0.60	-0.7
4,419,471	-		DDA3937_RS19440	0.60	-0.4
4,419,632	+				+1.0
4,419,632	+				-0.3
4,419,632	+				-1.4
4,419,633	-				+0.2
4,419,633	-				+1.9
4,419,675	+				+0.3
4,419,675	+				-0.7
4,419,676	-				-0.1
4,419,705	+				+0.6
4,419,706	-				+0.0
4,419,706	-				+0.6
4,419,753	+				-0.1
4,419,878	+				-0.6
4,419,878	+				+0.9
4,419,948	-				+0.6