Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS19000

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
4,339,164	+		DDA3937_RS18990	0.59	+0.1
4,339,165	-		DDA3937_RS18990	0.59	-0.5
4,339,165	-		DDA3937_RS18990	0.59	-0.2
4,339,165	-		DDA3937_RS18990	0.59	+0.6
4,339,258	+		DDA3937_RS18990	0.85	-1.6
4,339,259	-		DDA3937_RS18990	0.86	-0.6
4,339,259	-		DDA3937_RS18990	0.86	+0.7
4,339,262	+		DDA3937_RS18990	0.86	-0.7
4,339,262	+		DDA3937_RS18990	0.86	+0.2
4,339,262	+		DDA3937_RS18990	0.86	-0.9
4,339,263	-		DDA3937_RS18990	0.87	-1.4
4,339,263	-		DDA3937_RS18990	0.87	+0.4
4,339,263	-		DDA3937_RS18990	0.87	+0.3
4,339,267	+		DDA3937_RS18990	0.88	+0.2
4,339,267	+		DDA3937_RS18990	0.88	-1.4
4,339,291	+				-0.2
4,339,294	+				-0.1
4,339,294	+				+0.7
4,339,295	-				-0.4
4,339,309	+				-0.5
4,339,339	-				-1.3
4,339,339	-				-0.7
4,339,341	+				+0.6
4,339,341	+				+0.2
4,339,341	+				+0.9
4,339,342	-				-1.4
4,339,342	-				-0.3
4,339,342	-				+0.7
4,339,342	-				-0.1
4,339,360	+				+0.4
4,339,361	-				-0.7
4,339,377	+				+0.6
4,339,377	+				+0.2
4,339,378	-				-1.2
4,339,378	-				-0.9
4,339,378	-				+0.1
4,339,378	-				+0.4
4,339,430	-				-0.4
4,339,450	+				+1.1
4,339,451	-				-1.1
4,339,466	+				-1.0
4,339,466	+				-0.2
4,339,466	+				-0.1
4,340,043	-				+0.1
4,340,051	-				-1.4
4,340,085	-				-0.4
4,340,090	+				-2.0
4,340,090	+				+1.7
4,340,090	+				+0.8
4,340,090	+				+0.5
4,340,090	+				+0.1
4,340,090	+				+0.2
4,340,091	-				+0.6
4,340,091	-				-1.1
4,340,091	-				-1.0
4,340,095	-				-0.7
4,340,095	-				+0.1
4,340,096	+				+0.4
4,340,097	-				-0.8
4,340,139	+				+0.6
4,340,257	-		DDA3937_RS19000	0.18	+0.6
4,340,518	+		DDA3937_RS19000	0.43	-2.0
4,340,910	-		DDA3937_RS19000	0.80	-0.1
4,340,914	+		DDA3937_RS19000	0.81	-1.4
4,340,940	-		DDA3937_RS19000	0.83	-0.7
4,340,940	-		DDA3937_RS19000	0.83	-0.6
4,341,167	+				-0.4
4,341,168	-				+0.5
4,341,242	+		DDA3937_RS19005	0.26	+0.8
4,341,242	+		DDA3937_RS19005	0.26	+0.2
4,341,242	+		DDA3937_RS19005	0.26	-0.7
4,341,242	+		DDA3937_RS19005	0.26	-1.0
4,341,273	+		DDA3937_RS19005	0.34	+0.4
4,341,391	-		DDA3937_RS19005	0.69	+1.3
4,341,487	-				+0.3
4,341,513	+				-1.3
4,341,520	+				-0.4
4,341,565	+				-0.0
4,341,566	-				+0.4
4,341,650	-				+0.1
4,341,757	+				+0.3
4,341,757	+				-0.4
4,341,757	+				+0.3
4,341,757	+				-1.0
4,341,757	+				-0.4
4,341,757	+				-0.0
4,341,757	+				+0.8
4,341,758	-				-0.4
4,341,758	-				+1.6
4,341,758	-				+0.7
4,341,759	+				-0.9
4,341,759	+				-0.8
4,341,759	+				-1.0
4,341,759	+				-1.8
4,341,759	+				-0.4
4,341,759	+				-0.1
4,341,759	+				-1.0
4,341,759	+				+0.8
4,341,759	+				-0.3
4,341,759	+				-2.7
4,341,759	+				-0.1
4,341,759	+				-1.4
4,341,759	+				-1.7
4,341,759	+				+0.9
4,341,760	-				-0.0
4,341,760	-				+0.1
4,341,760	-				-0.7
4,341,760	-				+0.6
4,341,760	-				-0.3
4,341,760	-				+0.8
4,341,760	-				-0.3
4,341,760	-				-0.2
4,341,760	-				+0.0
4,341,777	+				-0.5
4,341,777	+				-0.2
4,341,778	-				-0.4
4,341,785	-				-1.0
4,341,785	-				-0.1
4,341,848	+				+1.1
4,341,897	+				+0.3
4,341,897	+				+0.4
4,341,897	+				-1.5
4,341,898	-				-0.4
4,341,898	-				+0.6
4,341,898	-				+0.9
4,341,898	-				+0.8
4,342,047	+		DDA3937_RS19010	0.21	-2.0
4,342,047	+		DDA3937_RS19010	0.21	-0.7
4,342,047	+		DDA3937_RS19010	0.21	+0.3
4,342,048	-		DDA3937_RS19010	0.21	+0.2
4,342,048	-		DDA3937_RS19010	0.21	-0.6
4,342,048	-		DDA3937_RS19010	0.21	-0.2
4,342,048	-		DDA3937_RS19010	0.21	+0.4
4,342,060	-		DDA3937_RS19010	0.22	-0.4
4,342,113	+		DDA3937_RS19010	0.27	+0.3
4,342,113	+		DDA3937_RS19010	0.27	+0.0
4,342,113	+		DDA3937_RS19010	0.27	-2.0
4,342,113	+		DDA3937_RS19010	0.27	+1.9
4,342,114	-				-1.0
4,342,114	-		DDA3937_RS19010	0.27	-0.0