Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS18845

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS18830 and DDA3937_RS18835 are separated by 14 nucleotidesDDA3937_RS18835 and DDA3937_RS18840 overlap by 17 nucleotidesDDA3937_RS18840 and DDA3937_RS18845 are separated by 4 nucleotidesDDA3937_RS18845 and DDA3937_RS18850 are separated by 12 nucleotides DDA3937_RS18830: DDA3937_RS18830 - nitrogen fixation protein NifM, at 4,303,342 to 4,304,136 _RS18830 DDA3937_RS18835: DDA3937_RS18835 - nitrogen fixation protein NifZ, at 4,304,151 to 4,304,594 _RS18835 DDA3937_RS18840: DDA3937_RS18840 - nitrogen fixation protein NifW, at 4,304,578 to 4,304,847 _RS18840 DDA3937_RS18845: DDA3937_RS18845 - homocitrate synthase, at 4,304,852 to 4,306,000 _RS18845 DDA3937_RS18850: DDA3937_RS18850 - cysteine desulfurase NifS, at 4,306,013 to 4,307,257 _RS18850 Position (kb) 4304 4305 4306 4307Strain fitness (log2 ratio) -2 -1 0 1at 4304.059 kb on + strandat 4304.059 kb on + strandat 4304.060 kb on - strandat 4304.173 kb on + strandat 4304.173 kb on + strandat 4304.173 kb on + strandat 4304.174 kb on - strandat 4304.174 kb on - strandat 4304.174 kb on - strandat 4304.434 kb on + strand, within DDA3937_RS18835at 4304.434 kb on + strand, within DDA3937_RS18835at 4304.434 kb on + strand, within DDA3937_RS18835at 4304.434 kb on + strand, within DDA3937_RS18835at 4304.435 kb on - strand, within DDA3937_RS18835at 4304.435 kb on - strand, within DDA3937_RS18835at 4304.435 kb on - strand, within DDA3937_RS18835at 4304.457 kb on + strand, within DDA3937_RS18835at 4304.457 kb on + strand, within DDA3937_RS18835at 4304.458 kb on - strand, within DDA3937_RS18835at 4304.458 kb on - strand, within DDA3937_RS18835at 4304.476 kb on + strand, within DDA3937_RS18835at 4304.476 kb on + strand, within DDA3937_RS18835at 4304.477 kb on - strand, within DDA3937_RS18835at 4304.541 kb on - strand, within DDA3937_RS18835at 4304.621 kb on + strand, within DDA3937_RS18840at 4304.622 kb on - strand, within DDA3937_RS18840at 4304.685 kb on + strand, within DDA3937_RS18840at 4304.685 kb on + strand, within DDA3937_RS18840at 4304.686 kb on - strand, within DDA3937_RS18840at 4304.753 kb on - strandat 4304.768 kb on + strand, within DDA3937_RS18840at 4304.834 kb on + strandat 4304.835 kb on - strandat 4304.835 kb on - strandat 4304.835 kb on - strandat 4304.901 kb on + strandat 4304.901 kb on + strandat 4304.902 kb on - strandat 4304.902 kb on - strandat 4304.902 kb on - strandat 4304.902 kb on - strandat 4305.105 kb on + strandat 4305.105 kb on + strand, within DDA3937_RS18845at 4305.105 kb on + strand, within DDA3937_RS18845at 4305.106 kb on - strand, within DDA3937_RS18845at 4305.346 kb on + strand, within DDA3937_RS18845at 4305.347 kb on - strand, within DDA3937_RS18845at 4305.474 kb on + strand, within DDA3937_RS18845at 4305.474 kb on + strand, within DDA3937_RS18845at 4305.475 kb on - strand, within DDA3937_RS18845at 4305.475 kb on - strand, within DDA3937_RS18845at 4305.475 kb on - strand, within DDA3937_RS18845at 4305.832 kb on + strand, within DDA3937_RS18845at 4305.832 kb on + strand, within DDA3937_RS18845at 4305.832 kb on + strand, within DDA3937_RS18845at 4305.833 kb on - strand, within DDA3937_RS18845at 4306.020 kb on + strandat 4306.020 kb on + strandat 4306.021 kb on - strandat 4306.021 kb on - strandat 4306.021 kb on - strandat 4306.128 kb on + strandat 4306.128 kb on + strandat 4306.151 kb on - strand, within DDA3937_RS18850at 4306.192 kb on + strand, within DDA3937_RS18850at 4306.194 kb on + strand, within DDA3937_RS18850at 4306.194 kb on + strand, within DDA3937_RS18850at 4306.195 kb on - strand, within DDA3937_RS18850at 4306.330 kb on + strand, within DDA3937_RS18850at 4306.331 kb on - strand, within DDA3937_RS18850at 4306.504 kb on + strand, within DDA3937_RS18850at 4306.505 kb on - strand, within DDA3937_RS18850at 4306.584 kb on + strand, within DDA3937_RS18850at 4306.585 kb on - strand, within DDA3937_RS18850at 4306.585 kb on - strand, within DDA3937_RS18850at 4306.585 kb on - strand, within DDA3937_RS18850at 4306.824 kb on + strand, within DDA3937_RS18850at 4306.825 kb on - strand, within DDA3937_RS18850at 4306.878 kb on + strand, within DDA3937_RS18850at 4306.878 kb on + strand, within DDA3937_RS18850at 4306.991 kb on - strand, within DDA3937_RS18850

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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4,304,059 + +0.6
4,304,059 + +0.5
4,304,060 - -0.1
4,304,173 + +1.4
4,304,173 + +1.0
4,304,173 + +0.1
4,304,174 - +1.0
4,304,174 - +0.0
4,304,174 - -0.4
4,304,434 + DDA3937_RS18835 0.64 +0.1
4,304,434 + DDA3937_RS18835 0.64 +0.2
4,304,434 + DDA3937_RS18835 0.64 -2.0
4,304,434 + DDA3937_RS18835 0.64 +1.0
4,304,435 - DDA3937_RS18835 0.64 -1.0
4,304,435 - DDA3937_RS18835 0.64 -0.2
4,304,435 - DDA3937_RS18835 0.64 -2.0
4,304,457 + DDA3937_RS18835 0.69 -0.4
4,304,457 + DDA3937_RS18835 0.69 +0.1
4,304,458 - DDA3937_RS18835 0.69 +0.8
4,304,458 - DDA3937_RS18835 0.69 -1.0
4,304,476 + DDA3937_RS18835 0.73 -0.8
4,304,476 + DDA3937_RS18835 0.73 -0.4
4,304,477 - DDA3937_RS18835 0.73 -0.7
4,304,541 - DDA3937_RS18835 0.88 -1.8
4,304,621 + DDA3937_RS18840 0.16 +0.1
4,304,622 - DDA3937_RS18840 0.16 +0.7
4,304,685 + DDA3937_RS18840 0.40 +0.4
4,304,685 + DDA3937_RS18840 0.40 +0.8
4,304,686 - DDA3937_RS18840 0.40 -0.2
4,304,753 - -1.0
4,304,768 + DDA3937_RS18840 0.70 +0.1
4,304,834 + -0.0
4,304,835 - -1.4
4,304,835 - -1.0
4,304,835 - -0.9
4,304,901 + -0.3
4,304,901 + +1.0
4,304,902 - -0.0
4,304,902 - -1.0
4,304,902 - +0.4
4,304,902 - +0.9
4,305,105 + +0.6
4,305,105 + DDA3937_RS18845 0.22 -0.4
4,305,105 + DDA3937_RS18845 0.22 +0.1
4,305,106 - DDA3937_RS18845 0.22 -1.4
4,305,346 + DDA3937_RS18845 0.43 -0.2
4,305,347 - DDA3937_RS18845 0.43 -1.5
4,305,474 + DDA3937_RS18845 0.54 -1.0
4,305,474 + DDA3937_RS18845 0.54 -0.4
4,305,475 - DDA3937_RS18845 0.54 -0.5
4,305,475 - DDA3937_RS18845 0.54 -0.3
4,305,475 - DDA3937_RS18845 0.54 -0.8
4,305,832 + DDA3937_RS18845 0.85 -1.6
4,305,832 + DDA3937_RS18845 0.85 -1.0
4,305,832 + DDA3937_RS18845 0.85 -0.2
4,305,833 - DDA3937_RS18845 0.85 -0.7
4,306,020 + -0.2
4,306,020 + +0.9
4,306,021 - -0.2
4,306,021 - -0.0
4,306,021 - +0.1
4,306,128 + +0.4
4,306,128 + -0.8
4,306,151 - DDA3937_RS18850 0.11 +0.3
4,306,192 + DDA3937_RS18850 0.14 +0.9
4,306,194 + DDA3937_RS18850 0.15 -0.7
4,306,194 + DDA3937_RS18850 0.15 +0.6
4,306,195 - DDA3937_RS18850 0.15 -0.4
4,306,330 + DDA3937_RS18850 0.25 -0.5
4,306,331 - DDA3937_RS18850 0.26 -0.5
4,306,504 + DDA3937_RS18850 0.39 -0.8
4,306,505 - DDA3937_RS18850 0.40 -1.1
4,306,584 + DDA3937_RS18850 0.46 -1.9
4,306,585 - DDA3937_RS18850 0.46 -0.3
4,306,585 - DDA3937_RS18850 0.46 +0.7
4,306,585 - DDA3937_RS18850 0.46 -0.6
4,306,824 + DDA3937_RS18850 0.65 -1.0
4,306,825 - DDA3937_RS18850 0.65 -0.1
4,306,878 + DDA3937_RS18850 0.69 -0.4
4,306,878 + DDA3937_RS18850 0.69 +0.4
4,306,991 - DDA3937_RS18850 0.79 -0.0

Or see this region's nucleotide sequence