Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS18675

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
4,267,929	+		DDA3937_RS18665	0.88	-0.6
4,267,929	+		DDA3937_RS18665	0.88	-0.1
4,267,929	+		DDA3937_RS18665	0.88	-0.7
4,267,930	-		DDA3937_RS18665	0.88	-1.3
4,267,985	+				+2.1
4,267,985	+				-1.3
4,267,986	-				-1.0
4,268,003	-				-0.4
4,268,040	+				-0.1
4,268,041	-				+0.6
4,268,041	-				+0.2
4,268,041	-				+1.1
4,268,046	+				+0.5
4,268,047	-				+0.1
4,268,047	-				+0.1
4,268,047	-				-0.8
4,268,052	+				-1.8
4,268,052	+				+0.5
4,268,052	+				+0.1
4,268,057	+				-0.6
4,268,057	+				+1.1
4,268,086	+				-0.3
4,268,086	+				-0.8
4,268,090	-				+0.6
4,268,122	-				-0.8
4,268,129	-				-2.3
4,268,129	-				+0.2
4,268,184	+				-0.4
4,268,203	-		DDA3937_RS18670	0.10	+1.0
4,268,250	-		DDA3937_RS18670	0.16	+0.1
4,268,330	-		DDA3937_RS18670	0.27	-2.0
4,268,349	+		DDA3937_RS18670	0.29	-1.0
4,268,350	-		DDA3937_RS18670	0.29	-0.0
4,268,350	-		DDA3937_RS18670	0.29	-0.4
4,268,351	+		DDA3937_RS18670	0.29	-0.4
4,268,405	-		DDA3937_RS18670	0.36	-2.4
4,268,438	-		DDA3937_RS18670	0.41	-0.4
4,268,581	+		DDA3937_RS18670	0.59	-0.4
4,268,612	-		DDA3937_RS18670	0.63	-3.4
4,268,743	+		DDA3937_RS18670	0.80	-1.8
4,268,899	-				-1.9
4,268,949	+				-1.6
4,269,027	+		DDA3937_RS18675	0.17	-1.6
4,269,027	+		DDA3937_RS18675	0.17	-0.7
4,269,028	-		DDA3937_RS18675	0.17	-0.6
4,269,028	-		DDA3937_RS18675	0.17	-1.4
4,269,128	-		DDA3937_RS18675	0.31	-1.6
4,269,249	+		DDA3937_RS18675	0.48	-0.0
4,269,249	+		DDA3937_RS18675	0.48	-1.0
4,269,250	-		DDA3937_RS18675	0.48	+1.6
4,269,250	-		DDA3937_RS18675	0.48	-1.0
4,269,250	-		DDA3937_RS18675	0.48	-0.6
4,269,253	+		DDA3937_RS18675	0.48	+0.0
4,269,336	+		DDA3937_RS18675	0.59	+1.7
4,269,337	-		DDA3937_RS18675	0.60	-0.4
4,269,372	-		DDA3937_RS18675	0.64	+0.1
4,269,460	-		DDA3937_RS18675	0.76	-2.4
4,269,507	-		DDA3937_RS18675	0.83	+0.1
4,269,507	-		DDA3937_RS18675	0.83	-1.4
4,269,560	+				+0.1
4,269,620	+				-0.4
4,269,620	+				+0.6
4,269,621	-				+0.8
4,269,624	+				-0.5
4,269,628	+				+0.1
4,269,628	+				-0.2
4,269,629	-				+0.1
4,269,793	+		DDA3937_RS18680	0.16	-2.4
4,269,818	-		DDA3937_RS18680	0.19	+0.1
4,269,843	-		DDA3937_RS18680	0.21	-1.3
4,269,930	+		DDA3937_RS18680	0.31	-0.9
4,269,988	+		DDA3937_RS18680	0.37	-0.9
4,269,998	+		DDA3937_RS18680	0.38	-0.4
4,270,085	-				-1.8
4,270,089	+		DDA3937_RS18680	0.47	-1.8
4,270,089	+		DDA3937_RS18680	0.47	-1.7
4,270,089	+		DDA3937_RS18680	0.47	-0.9
4,270,121	-				-1.0
4,270,161	+		DDA3937_RS18680	0.55	-1.8
4,270,214	-				-1.8
4,270,285	+		DDA3937_RS18680	0.68	-0.9
4,270,290	+		DDA3937_RS18680	0.69	-0.4
4,270,362	-		DDA3937_RS18680	0.77	-2.3
4,270,594	+				-0.8
4,270,594	+				-1.4